-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_4449799-4725670 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.42964_t Valid prediction for GeneMark_model.42975_t Valid prediction for GeneMark_model.43001_t Valid prediction for snap_scaffold_10-snap.1010-T1 Valid prediction for GeneMark_model.42998_t Valid prediction for GeneMark_model.42959_t Valid prediction for GlimmerHMM_glimmerT_25126-T1 Valid prediction for GeneMark_model.42955_t Valid prediction for GlimmerHMM_glimmerT_25132-T1 Valid prediction for GlimmerHMM_glimmerT_25143-T1 Valid prediction for snap_scaffold_10-snap.990-T1 Valid prediction for GeneMark_model.43009_t Valid prediction for GeneMark_model.42990_t Valid prediction for Augustus_model.g16857.t1 Valid prediction for GeneMark_model.42935_t Valid prediction for snap_scaffold_10-snap.985-T1 Valid prediction for snap_scaffold_10-snap.1001-T1 Valid prediction for GlimmerHMM_glimmerT_25121-T1 Valid prediction for GeneMark_model.42997_t Valid prediction for GeneMark_model.42981_t Valid prediction for GlimmerHMM_glimmerT_25137-T1 Valid prediction for snap_scaffold_10-snap.970-T1 Valid prediction for snap_scaffold_10-snap.977-T1 Valid prediction for CodingQuarry_transcript_5365-T1 Valid prediction for GeneMark_model.42978_t Valid prediction for GeneMark_model.43011_t Valid prediction for GeneMark_model.42951_t Valid prediction for Augustus_model.g16858.t1 Valid prediction for GlimmerHMM_glimmerT_25134-T1 Valid prediction for snap_scaffold_10-snap.999-T1 Valid prediction for snap_scaffold_10-snap.1014-T1 Valid prediction for GeneMark_model.43014_t Valid prediction for GeneMark_model.42954_t Valid prediction for GlimmerHMM_glimmerT_25130-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GeneMark_model.42995_t Valid prediction for GlimmerHMM_glimmerT_25139-T1 Valid prediction for GeneMark_model.42967_t Valid prediction for GeneMark_model.42932_t Valid prediction for snap_scaffold_10-snap.976-T1 Valid prediction for GeneMark_model.42957_t Valid prediction for GeneMark_model.42953_t Valid prediction for snap_scaffold_10-snap.984-T1 Valid prediction for GeneMark_model.42946_t Valid prediction for GeneMark_model.42958_t Valid prediction for GeneMark_model.42983_t Valid prediction for snap_scaffold_10-snap.983-T1 Valid prediction for GeneMark_model.42940_t Valid prediction for GlimmerHMM_glimmerT_25135-T1 Valid prediction for snap_scaffold_10-snap.991-T1 Valid prediction for snap_scaffold_10-snap.1017-T1 Valid prediction for snap_scaffold_10-snap.1005-T1 Valid prediction for GlimmerHMM_glimmerT_25140-T1 Valid prediction for snap_scaffold_10-snap.989-T1 Valid prediction for snap_scaffold_10-snap.1012-T1 Valid prediction for pasa_asmbl_5129.p1 Couldn't classify 54593, 55348 Sorry, prediction pasa_asmbl_4404.p1 fails validation. (ACA) AG 54593-55348 GG TGG Valid prediction for snap_scaffold_10-snap.978-T1 Valid prediction for GeneMark_model.42987_t Valid prediction for GeneMark_model.42960_t Valid prediction for HiQ_model.g16849.t1 Valid prediction for GeneMark_model.42938_t Valid prediction for Augustus_model.g16846.t1 Valid prediction for GeneMark_model.42930_t Valid prediction for Augustus_model.g16845.t1 Valid prediction for snap_scaffold_10-snap.965-T1 Valid prediction for Augustus_model.g16841.t1 Valid prediction for GeneMark_model.42973_t Valid prediction for snap_scaffold_10-snap.980-T1 Valid prediction for CodingQuarry_transcript_5364-T1 Valid prediction for snap_scaffold_10-snap.967-T1 Valid prediction for snap_scaffold_10-snap.1007-T1 Valid prediction for GlimmerHMM_glimmerT_25128-T1 Valid prediction for GeneMark_model.42931_t Valid prediction for GeneMark_model.43004_t Valid prediction for snap_scaffold_10-snap.972-T1 Valid prediction for GlimmerHMM_glimmerT_25118-T1 Valid prediction for snap_scaffold_10-snap.1008-T1 Valid prediction for GeneMark_model.42926_t Valid prediction for GeneMark_model.42942_t Valid prediction for Augustus_model.g16842.t1 Valid prediction for snap_scaffold_10-snap.966-T1 Valid prediction for GeneMark_model.42971_t Valid prediction for GeneMark_model.42924_t Valid prediction for snap_scaffold_10-snap.963-T1 Valid prediction for GlimmerHMM_glimmerT_25148-T1 Valid prediction for Augustus_model.g16851.t1 Valid prediction for snap_scaffold_10-snap.971-T1 Valid prediction for GeneMark_model.42969_t Valid prediction for GeneMark_model.43012_t Valid prediction for snap_scaffold_10-snap.1022-T1 Valid prediction for GeneMark_model.43016_t Valid prediction for GeneMark_model.42962_t Valid prediction for snap_scaffold_10-snap.959-T1 Valid prediction for GeneMark_model.42928_t Valid prediction for GeneMark_model.42991_t Valid prediction for GeneMark_model.42986_t Valid prediction for GeneMark_model.42984_t Valid prediction for GlimmerHMM_glimmerT_25146-T1 Valid prediction for snap_scaffold_10-snap.996-T1 Valid prediction for snap_scaffold_10-snap.1020-T1 Valid prediction for snap_scaffold_10-snap.1018-T1 Valid prediction for GeneMark_model.42993_t Valid prediction for GeneMark_model.43007_t Valid prediction for GlimmerHMM_glimmerT_25145-T1 Valid prediction for GeneMark_model.42949_t Valid prediction for GlimmerHMM_glimmerT_25123-T1 Valid prediction for snap_scaffold_10-snap.1015-T1 Valid prediction for GeneMark_model.42980_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.42948_t Valid prediction for GlimmerHMM_glimmerT_25150-T1 Valid prediction for GlimmerHMM_glimmerT_25122-T1 Valid prediction for GeneMark_model.42927_t Valid prediction for snap_scaffold_10-snap.1004-T1 Valid prediction for GeneMark_model.42979_t Valid prediction for GeneMark_model.43000_t Valid prediction for GlimmerHMM_glimmerT_25133-T1 Valid prediction for snap_scaffold_10-snap.974-T1 Valid prediction for GeneMark_model.43002_t Valid prediction for GlimmerHMM_glimmerT_25142-T1 Valid prediction for GlimmerHMM_glimmerT_25124-T1 Valid prediction for GeneMark_model.42965_t Valid prediction for snap_scaffold_10-snap.1002-T1 Valid prediction for snap_scaffold_10-snap.1000-T1 Valid prediction for snap_scaffold_10-snap.1016-T1 Valid prediction for snap_scaffold_10-snap.992-T1 Valid prediction for GeneMark_model.43003_t Valid prediction for snap_scaffold_10-snap.993-T1 Valid prediction for GeneMark_model.42985_t Valid prediction for snap_scaffold_10-snap.1006-T1 Valid prediction for GlimmerHMM_glimmerT_25131-T1 Valid prediction for GeneMark_model.42944_t Valid prediction for GeneMark_model.42925_t Valid prediction for GeneMark_model.42929_t Valid prediction for GlimmerHMM_glimmerT_25151-T1 Valid prediction for GlimmerHMM_glimmerT_25129-T1 Valid prediction for GeneMark_model.42947_t Valid prediction for CodingQuarry_transcript_5369-T1 Valid prediction for snap_scaffold_10-snap.998-T1 Valid prediction for snap_scaffold_10-snap.1021-T1 Valid prediction for snap_scaffold_10-snap.1003-T1 Valid prediction for GeneMark_model.42923_t Valid prediction for GeneMark_model.42937_t Valid prediction for GeneMark_model.43017_t Valid prediction for snap_scaffold_10-snap.973-T1 Couldn't classify 172522, 172666 Sorry, prediction pasa_asmbl_3970.p1 fails validation. (TTG) AG 172522-172666 GT AGG (ATC) AG 172861-172965 GT CGG (GTT) AG 173283-173382 GT TGG (GGT) AG 173480-173558 GG AAG -recovered pasa_asmbl_3970.p1, terminal, 173480, 173558 -recovered pasa_asmbl_3970.p1, internal, 172522, 172666 -recovered pasa_asmbl_3970.p1, internal, 172861, 172965 -recovered pasa_asmbl_3970.p1, internal, 173283, 173382 Valid prediction for snap_scaffold_10-snap.997-T1 Valid prediction for GeneMark_model.42936_t Valid prediction for GeneMark_model.42968_t Valid prediction for Augustus_model.g16853.t1 Valid prediction for GlimmerHMM_glimmerT_25120-T1 Valid prediction for GlimmerHMM_glimmerT_25153-T1 Couldn't classify 146039, 146228 Couldn't classify 150712, 150712 Sorry, prediction pasa_asmbl_3218.p2 fails validation. (GTC) AG 146039-146228 GT AGG (AGA) AG 147595-147727 GT TGG (ATA) AG 150712-150712 TA GAT -recovered pasa_asmbl_3218.p2, terminal, 146039, 146228 -recovered pasa_asmbl_3218.p2, internal, 146039, 146228 -recovered pasa_asmbl_3218.p2, internal, 147595, 147727 Valid prediction for GeneMark_model.43006_t Valid prediction for snap_scaffold_10-snap.986-T1 Couldn't classify 196800, 196960 Couldn't classify 199566, 199835 Sorry, prediction CodingQuarry_transcript_5361-T1 fails validation. (ATG) AC 192683-192767 GT ACG (CCC) AG 194504-194630 GT CCG (TTA) AG 194755-194906 GT GAG (AAC) AG 195340-195467 GT AGG (GTC) AG 195592-195733 GT GGG (CCC) AG 195999-196123 GT CGG (ATT) AG 196800-196960 TA GGT (GTG) GT 199566-199835 GT AGG (GGA) AG 200214-200371 GT AGG (ACA) AG 200690-200934 GT AGG (AAT) AG 202910-203069 GT GGG (TCT) AG 203149-203341 GT AGG (GGT) AG 203458-203649 GT AGG (AGC) AG 205608-205756 GT GGG (GTG) AG 206449-207158 TC GAT -recovered CodingQuarry_transcript_5361-T1, initial, 192683, 192767 add_exon() Sorry, CodingQuarry_transcript_5361-T1 194755-194906-terminal-2 is invalid. -recovered CodingQuarry_transcript_5361-T1, terminal, 194755, 194906 add_exon() Sorry, CodingQuarry_transcript_5361-T1 200214-200371-terminal-2 is invalid. -recovered CodingQuarry_transcript_5361-T1, terminal, 200214, 200371 -recovered CodingQuarry_transcript_5361-T1, terminal, 206449, 207158 -recovered CodingQuarry_transcript_5361-T1, internal, 194504, 194630 -recovered CodingQuarry_transcript_5361-T1, internal, 194755, 194906 -recovered CodingQuarry_transcript_5361-T1, internal, 195340, 195467 -recovered CodingQuarry_transcript_5361-T1, internal, 195592, 195733 -recovered CodingQuarry_transcript_5361-T1, internal, 195999, 196123 -recovered CodingQuarry_transcript_5361-T1, internal, 200214, 200371 -recovered CodingQuarry_transcript_5361-T1, internal, 200690, 200934 -recovered CodingQuarry_transcript_5361-T1, internal, 202910, 203069 -recovered CodingQuarry_transcript_5361-T1, internal, 203149, 203341 -recovered CodingQuarry_transcript_5361-T1, internal, 203458, 203649 -recovered CodingQuarry_transcript_5361-T1, internal, 205608, 205756 Valid prediction for GlimmerHMM_glimmerT_25138-T1 Valid prediction for GeneMark_model.42999_t Valid prediction for GeneMark_model.42970_t Valid prediction for GeneMark_model.43008_t Valid prediction for snap_scaffold_10-snap.1011-T1 Valid prediction for snap_scaffold_10-snap.979-T1 Valid prediction for GeneMark_model.42989_t Valid prediction for Augustus_model.g16855.t1 Valid prediction for snap_scaffold_10-snap.982-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for Augustus_model.g16850.t1 Valid prediction for snap_scaffold_10-snap.969-T1 Valid prediction for snap_scaffold_10-snap.995-T1 Valid prediction for GeneMark_model.42956_t Valid prediction for GeneMark_model.42941_t Valid prediction for snap_scaffold_10-snap.1009-T1 Valid prediction for snap_scaffold_10-snap.981-T1 Couldn't classify 196800, 196888 Couldn't classify 197513, 197584 Couldn't classify 199566, 199835 Sorry, prediction CodingQuarry_transcript_5363-T1 fails validation. (ATG) AC 192683-192767 GT ACG (CCC) AG 194504-194630 GT CCG (TTA) AG 194755-194906 GT GAG (AAC) AG 195340-195467 GT AGG (GTC) AG 195592-195733 GT GGG (CCC) AG 195999-196123 GT CGG (ATT) AG 196800-196888 CT ACC (CTG) AC 197513-197584 TA GGT (GTG) GT 199566-199835 GT AGG (GGA) AG 200214-200371 GT AGG (ACA) AG 200690-200713 GT AAG (CCA) AG 200846-200934 GT AGG (AAT) AG 202910-203069 GT GGG (TCT) AG 203149-203341 GT AGG (GGT) AG 203458-203649 GT AGG (AGC) AG 205608-205756 GT GGG (GTG) AG 206449-207158 TC GAT -recovered CodingQuarry_transcript_5363-T1, initial, 192683, 192767 add_exon() Sorry, CodingQuarry_transcript_5363-T1 194755-194906-terminal-2 is invalid. -recovered CodingQuarry_transcript_5363-T1, terminal, 194755, 194906 add_exon() Sorry, CodingQuarry_transcript_5363-T1 200214-200371-terminal-2 is invalid. -recovered CodingQuarry_transcript_5363-T1, terminal, 200214, 200371 -recovered CodingQuarry_transcript_5363-T1, terminal, 206449, 207158 -recovered CodingQuarry_transcript_5363-T1, internal, 194504, 194630 -recovered CodingQuarry_transcript_5363-T1, internal, 194755, 194906 -recovered CodingQuarry_transcript_5363-T1, internal, 195340, 195467 -recovered CodingQuarry_transcript_5363-T1, internal, 195592, 195733 -recovered CodingQuarry_transcript_5363-T1, internal, 195999, 196123 -recovered CodingQuarry_transcript_5363-T1, internal, 200214, 200371 -recovered CodingQuarry_transcript_5363-T1, internal, 200690, 200713 -recovered CodingQuarry_transcript_5363-T1, internal, 200846, 200934 -recovered CodingQuarry_transcript_5363-T1, internal, 202910, 203069 -recovered CodingQuarry_transcript_5363-T1, internal, 203149, 203341 -recovered CodingQuarry_transcript_5363-T1, internal, 203458, 203649 -recovered CodingQuarry_transcript_5363-T1, internal, 205608, 205756 Valid prediction for GeneMark_model.42939_t Valid prediction for snap_scaffold_10-snap.1023-T1 Valid prediction for GeneMark_model.42994_t Valid prediction for snap_scaffold_10-snap.961-T1 Valid prediction for CodingQuarry_transcript_5371-T1 Valid prediction for GeneMark_model.43005_t Valid prediction for GeneMark_model.42943_t Valid prediction for GlimmerHMM_glimmerT_25144-T1 Valid prediction for GeneMark_model.42974_t Valid prediction for pasa_asmbl_3212.p1 Valid prediction for snap_scaffold_10-snap.960-T1 Valid prediction for GlimmerHMM_glimmerT_25141-T1 Valid prediction for Augustus_model.g16860.t1 Couldn't classify 196800, 196888 Couldn't classify 197513, 197584 Couldn't classify 199566, 199835 Sorry, prediction CodingQuarry_transcript_5362-T1 fails validation. (ATG) AC 192683-192767 GT ACG (CCC) AG 194504-194630 GT CCG (TTA) AG 194755-194906 GT GAG (AAC) AG 195340-195467 GT AGG (GTC) AG 195592-195733 GT GGG (CCC) AG 195999-196123 GT CGG (ATT) AG 196800-196888 CT ACC (CTG) AC 197513-197584 TA GGT (GTG) GT 199566-199835 GT AGG (GGA) AG 200214-200371 GT AGG (ACA) AG 201295-201318 GT AAG (CCA) AG 201451-201539 GT AGG (AAT) AG 202910-203069 GT GGG (TCT) AG 203149-203341 GT AGG (GGT) AG 203458-203649 GT AGG (AGC) AG 205608-205756 GT GGG (GTG) AG 206449-207158 TC GAT -recovered CodingQuarry_transcript_5362-T1, initial, 192683, 192767 add_exon() Sorry, CodingQuarry_transcript_5362-T1 194755-194906-terminal-2 is invalid. -recovered CodingQuarry_transcript_5362-T1, terminal, 194755, 194906 add_exon() Sorry, CodingQuarry_transcript_5362-T1 200214-200371-terminal-2 is invalid. -recovered CodingQuarry_transcript_5362-T1, terminal, 200214, 200371 -recovered CodingQuarry_transcript_5362-T1, terminal, 206449, 207158 -recovered CodingQuarry_transcript_5362-T1, internal, 194504, 194630 -recovered CodingQuarry_transcript_5362-T1, internal, 194755, 194906 -recovered CodingQuarry_transcript_5362-T1, internal, 195340, 195467 -recovered CodingQuarry_transcript_5362-T1, internal, 195592, 195733 -recovered CodingQuarry_transcript_5362-T1, internal, 195999, 196123 -recovered CodingQuarry_transcript_5362-T1, internal, 200214, 200371 -recovered CodingQuarry_transcript_5362-T1, internal, 201295, 201318 -recovered CodingQuarry_transcript_5362-T1, internal, 201451, 201539 -recovered CodingQuarry_transcript_5362-T1, internal, 202910, 203069 -recovered CodingQuarry_transcript_5362-T1, internal, 203149, 203341 -recovered CodingQuarry_transcript_5362-T1, internal, 203458, 203649 -recovered CodingQuarry_transcript_5362-T1, internal, 205608, 205756 Valid prediction for pasa_asmbl_3210.p1 Valid prediction for Augustus_model.g16862.t1 Valid prediction for GeneMark_model.42963_t Couldn't classify 2556, 2582 Sorry, prediction pasa_asmbl_3225.p1 fails validation. (ATG) CT 412-445 GT AGG (AAC) AG 831-1000 GT AGG (GTG) AG 1139-1214 GT AGG (GTC) AG 1768-1816 GT TGG (CAA) AG 2332-2461 GT AGG (ATA) AG 2556-2582 GG TGG -recovered pasa_asmbl_3225.p1, initial, 412, 445 -recovered pasa_asmbl_3225.p1, internal, 831, 1000 -recovered pasa_asmbl_3225.p1, internal, 1139, 1214 -recovered pasa_asmbl_3225.p1, internal, 1768, 1816 -recovered pasa_asmbl_3225.p1, internal, 2332, 2461 Valid prediction for GlimmerHMM_glimmerT_25147-T1 Valid prediction for GeneMark_model.43013_t Valid prediction for snap_scaffold_10-snap.1019-T1 Valid prediction for GeneMark_model.42972_t Valid prediction for snap_scaffold_10-snap.968-T1 Valid prediction for GeneMark_model.42945_t Valid prediction for snap_scaffold_10-snap.962-T1 Valid prediction for GeneMark_model.42961_t Valid prediction for GlimmerHMM_glimmerT_25149-T1 Valid prediction for GeneMark_model.42996_t Valid prediction for GlimmerHMM_glimmerT_25119-T1 Valid prediction for Augustus_model.g16848.t1 Valid prediction for Augustus_model.g16847.t1 Valid prediction for CodingQuarry_transcript_5366-T1 Valid prediction for GeneMark_model.42950_t Valid prediction for snap_scaffold_10-snap.987-T1 Valid prediction for GlimmerHMM_glimmerT_25127-T1 Valid prediction for snap_scaffold_10-snap.988-T1 Valid prediction for GeneMark_model.42933_t Valid prediction for CodingQuarry_transcript_5367-T1 Valid prediction for Augustus_model.g16844.t1 Valid prediction for Augustus_model.g16843.t1 Valid prediction for GlimmerHMM_glimmerT_25136-T1 Valid prediction for GeneMark_model.42952_t Valid prediction for snap_scaffold_10-snap.964-T1 Valid prediction for GeneMark_model.43015_t Valid prediction for GeneMark_model.42982_t Valid prediction for Augustus_model.g16854.t1 Valid prediction for GlimmerHMM_glimmerT_25154-T1 Valid prediction for Augustus_model.g16856.t1 Valid prediction for GlimmerHMM_glimmerT_25152-T1 Valid prediction for GeneMark_model.42934_t Valid prediction for GlimmerHMM_glimmerT_25125-T1 Valid prediction for Augustus_model.g16861.t1 Valid prediction for GeneMark_model.42976_t Valid prediction for GeneMark_model.42966_t Valid prediction for snap_scaffold_10-snap.994-T1 Valid prediction for snap_scaffold_10-snap.1013-T1 Valid prediction for GeneMark_model.42977_t Couldn't classify 171332, 171416 Sorry, prediction pasa_asmbl_4005.p1 fails validation. (ATG) AG 168609-168705 GT AGG (TGT) AG 169497-169563 GT AGG (GCG) AG 169652-169824 GT ATG (ATC) AG 171019-171133 GT AGG (GGG) AG 171332-171416 GT TTG -recovered pasa_asmbl_4005.p1, initial, 168609, 168705 -recovered pasa_asmbl_4005.p1, internal, 168609, 168705 -recovered pasa_asmbl_4005.p1, internal, 169497, 169563 -recovered pasa_asmbl_4005.p1, internal, 169652, 169824 -recovered pasa_asmbl_4005.p1, internal, 171019, 171133 -recovered pasa_asmbl_4005.p1, internal, 171332, 171416 Valid prediction for Augustus_model.g16852.t1 Valid prediction for Augustus_model.g16863.t1 Valid prediction for GeneMark_model.42992_t Valid prediction for CodingQuarry_transcript_5370-T1 Valid prediction for GeneMark_model.43010_t Valid prediction for snap_scaffold_10-snap.975-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_10-snap.1024-T1 Couldn't classify 196800, 196960 Couldn't classify 199566, 199835 Sorry, prediction CodingQuarry_transcript_5360-T1 fails validation. (ATG) AC 192683-192767 GT ACG (CCC) AG 194504-194630 GT CCG (TTA) AG 194755-194906 GT GAG (AAC) AG 195340-195467 GT AGG (GTC) AG 195592-195733 GT GGG (CCC) AG 195999-196123 GT CGG (ATT) AG 196800-196960 TA GGT (GTG) GT 199566-199835 GT AGG (GGA) AG 200214-200371 GT AGG (ACA) AG 200690-200713 GT AAG (CCA) AG 201451-201539 GT AGG (AAT) AG 202910-203069 GT GGG (TCT) AG 203149-203341 GT AGG (GGT) AG 203458-203649 GT AGG (AGC) AG 205608-205756 GT GGG (GTG) AG 206449-207158 TC GAT -recovered CodingQuarry_transcript_5360-T1, initial, 192683, 192767 add_exon() Sorry, CodingQuarry_transcript_5360-T1 194755-194906-terminal-2 is invalid. -recovered CodingQuarry_transcript_5360-T1, terminal, 194755, 194906 add_exon() Sorry, CodingQuarry_transcript_5360-T1 200214-200371-terminal-2 is invalid. -recovered CodingQuarry_transcript_5360-T1, terminal, 200214, 200371 -recovered CodingQuarry_transcript_5360-T1, terminal, 206449, 207158 -recovered CodingQuarry_transcript_5360-T1, internal, 194504, 194630 -recovered CodingQuarry_transcript_5360-T1, internal, 194755, 194906 -recovered CodingQuarry_transcript_5360-T1, internal, 195340, 195467 -recovered CodingQuarry_transcript_5360-T1, internal, 195592, 195733 -recovered CodingQuarry_transcript_5360-T1, internal, 195999, 196123 -recovered CodingQuarry_transcript_5360-T1, internal, 200214, 200371 -recovered CodingQuarry_transcript_5360-T1, internal, 200690, 200713 -recovered CodingQuarry_transcript_5360-T1, internal, 201451, 201539 -recovered CodingQuarry_transcript_5360-T1, internal, 202910, 203069 -recovered CodingQuarry_transcript_5360-T1, internal, 203149, 203341 -recovered CodingQuarry_transcript_5360-T1, internal, 203458, 203649 -recovered CodingQuarry_transcript_5360-T1, internal, 205608, 205756 Valid prediction for GeneMark_model.42988_t Valid prediction for Augustus_model.g16859.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25328, rend_intergenic: 4633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28280, rend_intergenic: 25651 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37983, rend_intergenic: 30477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42625, rend_intergenic: 38343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45518, rend_intergenic: 43058 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55360, rend_intergenic: 51643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64110, rend_intergenic: 60599 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77908, rend_intergenic: 68715 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85348, rend_intergenic: 77912 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99086, rend_intergenic: 85495 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113903, rend_intergenic: 101159 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128289, rend_intergenic: 113979 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151341, rend_intergenic: 129587 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166731, rend_intergenic: 152453 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170311, rend_intergenic: 167582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180332, rend_intergenic: 170672 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184140, rend_intergenic: 180425 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186298, rend_intergenic: 184365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198545, rend_intergenic: 187087 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201998, rend_intergenic: 198709 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214827, rend_intergenic: 204072 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220850, rend_intergenic: 217340 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228105, rend_intergenic: 223005 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232121, rend_intergenic: 230596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236558, rend_intergenic: 233254 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 251759, rend_intergenic: 238501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256080, rend_intergenic: 254611 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258869, rend_intergenic: 256173 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 266883, rend_intergenic: 258888 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270078, rend_intergenic: 267183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 275872 -exon list size: 1312 building trellis 0.1 0.2 0.2 0.3 0.4 0.5 0.5 0.6 0.7 0.8 0.8 0.9 1.0 1.1 1.1 1.2 1.3 1.4 1.4 1.5 1.6 1.7 1.8 1.8 1.9 2.0 2.1 2.1 2.2 2.3 2.4 2.4 2.5 2.6 2.7 2.7 2.8 2.9 3.0 3.0 3.1 3.2 3.3 3.3 3.4 3.5 3.6 3.7 3.7 3.8 3.9 4.0 4.0 4.1 4.2 4.3 4.3 4.4 4.5 4.6 4.6 4.7 4.8 4.9 4.9 5.0 5.1 5.2 5.3 5.3 5.4 5.5 5.6 5.6 5.7 5.8 5.9 5.9 6.0 6.1 6.2 6.2 6.3 6.4 6.5 6.5 6.6 6.7 6.8 6.8 6.9 7.0 7.1 7.2 7.2 7.3 7.4 7.5 7.5 7.6 7.7 7.8 7.8 7.9 8.0 8.1 8.1 8.2 8.3 8.4 8.4 8.5 8.6 8.7 8.8 8.8 8.9 9.0 9.1 9.1 9.2 9.3 9.4 9.4 9.5 9.6 9.7 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.4 10.4 10.5 10.6 10.7 10.7 10.8 10.9 11.0 11.0 11.1 11.2 11.3 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 11.9 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.6 12.7 12.8 12.9 12.9 13.0 13.1 13.2 13.2 13.3 13.4 13.5 13.5 13.6 13.7 13.8 13.9 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.5 14.6 14.7 14.8 14.8 14.9 15.0 15.1 15.1 15.2 15.3 15.4 15.4 15.5 15.6 15.7 15.8 15.8 15.9 16.0 16.1 16.1 16.2 16.3 16.4 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.0 17.1 17.2 17.3 17.4 17.4 17.5 17.6 17.7 17.7 17.8 17.9 18.0 18.0 18.1 18.2 18.3 18.3 18.4 18.5 18.6 18.6 18.7 18.8 18.9 18.9 19.0 19.1 19.2 19.3 19.3 19.4 19.5 19.6 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.2 20.3 20.4 20.5 20.5 20.6 20.7 20.8 20.9 20.9 21.0 21.1 21.2 21.2 21.3 21.4 21.5 21.5 21.6 21.7 21.8 21.8 21.9 22.0 22.1 22.1 22.2 22.3 22.4 22.5 22.5 22.6 22.7 22.8 22.8 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.4 23.5 23.6 23.7 23.7 23.8 23.9 24.0 24.0 24.1 24.2 24.3 24.4 24.4 24.5 24.6 24.7 24.7 24.8 24.9 25.0 25.0 25.1 25.2 25.3 25.3 25.4 25.5 25.6 25.6 25.7 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.6 26.7 26.8 26.9 26.9 27.0 27.1 27.2 27.2 27.3 27.4 27.5 27.5 27.6 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.8 28.8 28.9 29.0 29.1 29.1 29.2 29.3 29.4 29.5 29.5 29.6 29.7 29.8 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.4 30.5 30.6 30.7 30.7 30.8 30.9 31.0 31.1 31.1 31.2 31.3 31.4 31.4 31.5 31.6 31.7 31.7 31.8 31.9 32.0 32.0 32.1 32.2 32.3 32.3 32.4 32.5 32.6 32.6 32.7 32.8 32.9 33.0 33.0 33.1 33.2 33.3 33.3 33.4 33.5 33.6 33.6 33.7 33.8 33.9 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.5 34.6 34.6 34.7 34.8 34.9 34.9 35.0 35.1 35.2 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.1 36.2 36.3 36.4 36.5 36.5 36.6 36.7 36.8 36.8 36.9 37.0 37.1 37.1 37.2 37.3 37.4 37.4 37.5 37.6 37.7 37.7 37.8 37.9 38.0 38.1 38.1 38.2 38.3 38.4 38.4 38.5 38.6 38.7 38.7 38.8 38.9 39.0 39.0 39.1 39.2 39.3 39.3 39.4 39.5 39.6 39.6 39.7 39.8 39.9 40.0 40.0 40.1 40.2 40.3 40.3 40.4 40.5 40.6 40.6 40.7 40.8 40.9 40.9 41.0 41.1 41.2 41.2 41.3 41.4 41.5 41.6 41.6 41.7 41.8 41.9 41.9 42.0 42.1 42.2 42.2 42.3 42.4 42.5 42.5 42.6 42.7 42.8 42.8 42.9 43.0 43.1 43.2 43.2 43.3 43.4 43.5 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.1 44.2 44.3 44.4 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.1 45.1 45.2 45.3 45.4 45.4 45.5 45.6 45.7 45.7 45.8 45.9 46.0 46.0 46.1 46.2 46.3 46.3 46.4 46.5 46.6 46.7 46.7 46.8 46.9 47.0 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.6 47.7 47.8 47.9 47.9 48.0 48.1 48.2 48.2 48.3 48.4 48.5 48.6 48.6 48.7 48.8 48.9 48.9 49.0 49.1 49.2 49.2 49.3 49.4 49.5 49.5 49.6 49.7 49.8 49.8 49.9 50.0 50.1 50.2 50.2 50.3 50.4 50.5 50.5 50.6 50.7 50.8 50.8 50.9 51.0 51.1 51.1 51.2 51.3 51.4 51.4 51.5 51.6 51.7 51.8 51.8 51.9 52.0 52.1 52.1 52.2 52.3 52.4 52.4 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.0 53.1 53.2 53.3 53.3 53.4 53.5 53.6 53.7 53.7 53.8 53.9 54.0 54.0 54.1 54.2 54.3 54.3 54.4 54.5 54.6 54.6 54.7 54.8 54.9 54.9 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.6 55.7 55.8 55.9 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.5 56.6 56.7 56.8 56.8 56.9 57.0 57.1 57.2 57.2 57.3 57.4 57.5 57.5 57.6 57.7 57.8 57.8 57.9 58.0 58.1 58.1 58.2 58.3 58.4 58.4 58.5 58.6 58.7 58.8 58.8 58.9 59.0 59.1 59.1 59.2 59.3 59.4 59.4 59.5 59.6 59.7 59.7 59.8 59.9 60.0 60.0 60.1 60.2 60.3 60.4 60.4 60.5 60.6 60.7 60.7 60.8 60.9 61.0 61.0 61.1 61.2 61.3 61.3 61.4 61.5 61.6 61.6 61.7 61.8 61.9 61.9 62.0 62.1 62.2 62.3 62.3 62.4 62.5 62.6 62.6 62.7 62.8 62.9 62.9 63.0 63.1 63.2 63.2 63.3 63.4 63.5 63.5 63.6 63.7 63.8 63.9 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.8 64.9 65.0 65.1 65.1 65.2 65.3 65.4 65.4 65.5 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.1 66.2 66.3 66.4 66.4 66.5 66.6 66.7 66.7 66.8 66.9 67.0 67.0 67.1 67.2 67.3 67.4 67.4 67.5 67.6 67.7 67.7 67.8 67.9 68.0 68.0 68.1 68.2 68.3 68.3 68.4 68.5 68.6 68.6 68.7 68.8 68.9 68.9 69.0 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.2 70.3 70.4 70.5 70.5 70.6 70.7 70.8 70.9 70.9 71.0 71.1 71.2 71.2 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.4 72.5 72.5 72.6 72.7 72.8 72.8 72.9 73.0 73.1 73.1 73.2 73.3 73.4 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.3 74.4 74.4 74.5 74.6 74.7 74.7 74.8 74.9 75.0 75.0 75.1 75.2 75.3 75.3 75.4 75.5 75.6 75.6 75.7 75.8 75.9 76.0 76.0 76.1 76.2 76.3 76.3 76.4 76.5 76.6 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.2 77.2 77.3 77.4 77.5 77.5 77.6 77.7 77.8 77.9 77.9 78.0 78.1 78.2 78.2 78.3 78.4 78.5 78.5 78.6 78.7 78.8 78.8 78.9 79.0 79.1 79.1 79.2 79.3 79.4 79.5 79.5 79.6 79.7 79.8 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.4 80.5 80.6 80.7 80.7 80.8 80.9 81.0 81.1 81.1 81.2 81.3 81.4 81.4 81.5 81.6 81.7 81.7 81.8 81.9 82.0 82.0 82.1 82.2 82.3 82.3 82.4 82.5 82.6 82.6 82.7 82.8 82.9 83.0 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.6 83.7 83.8 83.9 83.9 84.0 84.1 84.2 84.2 84.3 84.4 84.5 84.6 84.6 84.7 84.8 84.9 84.9 85.0 85.1 85.2 85.2 85.3 85.4 85.5 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.1 86.2 86.3 86.4 86.5 86.5 86.6 86.7 86.8 86.8 86.9 87.0 87.1 87.1 87.2 87.3 87.4 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.1 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.7 88.8 88.9 89.0 89.0 89.1 89.2 89.3 89.3 89.4 89.5 89.6 89.6 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.3 90.4 90.5 90.6 90.6 90.7 90.8 90.9 90.9 91.0 91.1 91.2 91.2 91.3 91.4 91.5 91.6 91.6 91.7 91.8 91.9 91.9 92.0 92.1 92.2 92.2 92.3 92.4 92.5 92.5 92.6 92.7 92.8 92.8 92.9 93.0 93.1 93.2 93.2 93.3 93.4 93.5 93.5 93.6 93.7 93.8 93.8 93.9 94.0 94.1 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.7 94.7 94.8 94.9 95.0 95.1 95.1 95.2 95.3 95.4 95.4 95.5 95.6 95.7 95.7 95.8 95.9 96.0 96.0 96.1 96.2 96.3 96.3 96.4 96.5 96.6 96.7 96.7 96.8 96.9 97.0 97.0 97.1 97.2 97.3 97.3 97.4 97.5 97.6 97.6 97.7 97.8 97.9 97.9 98.0 98.1 98.2 98.2 98.3 98.4 98.5 98.6 98.6 98.7 98.8 98.9 98.9 99.0 99.1 99.2 99.2 99.3 99.4 99.5 99.5 99.6 99.7 99.8 99.8 99.9 -found 65 predictions from path traversal Error with prediction: snap lend_intergenic: 25328, rend_intergenic: 4633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28280, rend_intergenic: 25651 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37983, rend_intergenic: 30477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42625, rend_intergenic: 38343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45518, rend_intergenic: 43058 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55360, rend_intergenic: 51643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64110, rend_intergenic: 60599 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77908, rend_intergenic: 68715 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85348, rend_intergenic: 77912 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99086, rend_intergenic: 85495 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113903, rend_intergenic: 101159 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128289, rend_intergenic: 113979 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151341, rend_intergenic: 129587 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166731, rend_intergenic: 152453 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170311, rend_intergenic: 167582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180332, rend_intergenic: 170672 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184140, rend_intergenic: 180425 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186298, rend_intergenic: 184365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198545, rend_intergenic: 187087 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201998, rend_intergenic: 198709 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214827, rend_intergenic: 204072 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220850, rend_intergenic: 217340 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228105, rend_intergenic: 223005 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232121, rend_intergenic: 230596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236558, rend_intergenic: 233254 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 251759, rend_intergenic: 238501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256080, rend_intergenic: 254611 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258869, rend_intergenic: 256173 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 266883, rend_intergenic: 258888 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270078, rend_intergenic: 267183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 26 predictions persist after filtering for low support