-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_3948923-4217424

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_25047-T1
Valid prediction for CodingQuarry_transcript_5347-T1
Valid prediction for GeneMark_model.42792_t
Valid prediction for Augustus_model.g16794.t1
Valid prediction for GlimmerHMM_glimmerT_25063-T1
Valid prediction for GeneMark_model.42808_t
Valid prediction for GlimmerHMM_glimmerT_25064-T1
Valid prediction for pasa_asmbl_4386.p1
Valid prediction for snap_scaffold_10-snap.876-T1
Valid prediction for snap_scaffold_10-snap.859-T1
Valid prediction for snap_scaffold_10-snap.853-T1
Valid prediction for snap_scaffold_10-snap.871-T1
Valid prediction for snap_scaffold_10-snap.894-T1
Valid prediction for GeneMark_model.42800_t
Valid prediction for GeneMark_model.42811_t
Valid prediction for HiQ_model.g16792.t1
Valid prediction for snap_scaffold_10-snap.882-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_25054-T1
Valid prediction for GeneMark_model.42786_t
Valid prediction for GeneMark_model.42841_t
Valid prediction for GlimmerHMM_glimmerT_25052-T1
Valid prediction for GlimmerHMM_glimmerT_25044-T1
Valid prediction for snap_scaffold_10-snap.896-T1
Valid prediction for GlimmerHMM_glimmerT_25049-T1
Valid prediction for GlimmerHMM_glimmerT_25068-T1
Valid prediction for GeneMark_model.42815_t
Valid prediction for Augustus_model.g16784.t1
Valid prediction for GlimmerHMM_glimmerT_25076-T1
Valid prediction for HiQ_model.g16802.t1
Valid prediction for snap_scaffold_10-snap.862-T1
Valid prediction for snap_scaffold_10-snap.864-T1
Valid prediction for GeneMark_model.42821_t
Valid prediction for GeneMark_model.42825_t
Couldn't classify 78609, 78678
Couldn't classify 78887, 79206
Sorry, prediction pasa_asmbl_4377.p1 fails validation.
(GGA)	 AT	78609-78678	GT	GGG
(AAT)	 AG	78887-79206	GA	GGG
Valid prediction for snap_scaffold_10-snap.879-T1
Valid prediction for Augustus_model.g16789.t1
Valid prediction for GlimmerHMM_glimmerT_25051-T1
Valid prediction for GeneMark_model.42847_t
Valid prediction for snap_scaffold_10-snap.861-T1
Valid prediction for HiQ_model.g16791.t1
Valid prediction for GeneMark_model.42824_t
Valid prediction for GlimmerHMM_glimmerT_25067-T1
Valid prediction for GeneMark_model.42794_t
Valid prediction for GlimmerHMM_glimmerT_25041-T1
Valid prediction for GlimmerHMM_glimmerT_25046-T1
Valid prediction for GeneMark_model.42799_t
Valid prediction for snap_scaffold_10-snap.881-T1
Valid prediction for GeneMark_model.42813_t
Valid prediction for GlimmerHMM_glimmerT_25058-T1
Valid prediction for snap_scaffold_10-snap.886-T1
Valid prediction for snap_scaffold_10-snap.869-T1
Valid prediction for GeneMark_model.42827_t
Valid prediction for CodingQuarry_transcript_5344-T1
Couldn't classify 82000, 84003
Sorry, prediction pasa_asmbl_4379.p1 fails validation.
(GTC)	 AT	82000-84003	GT	AGG
(GAC)	 AG	84227-84361	GT	AGG
(CAG)	 AG	86121-86512	GT	AAG
(CCT)	 AG	87421-87539	GT	AGG
(GTG)	 AG	88834-89025	GT	TGG
(ACC)	 AG	90016-90271	GT	AAG
(GTC)	 AG	90414-90550	GT	AGG
(AGG)	 AG	91135-91358	GT	AGG
(GTG)	 AG	91558-91813	GT	AGG
(TGT)	 AG	91946-92057	GT	ATG
(GAC)	 AG	92323-92539	AA	AAA
-recovered pasa_asmbl_4379.p1, terminal, 92323, 92539
-recovered pasa_asmbl_4379.p1, internal, 84227, 84361
-recovered pasa_asmbl_4379.p1, internal, 86121, 86512
-recovered pasa_asmbl_4379.p1, internal, 87421, 87539
-recovered pasa_asmbl_4379.p1, internal, 88834, 89025
-recovered pasa_asmbl_4379.p1, internal, 90016, 90271
-recovered pasa_asmbl_4379.p1, internal, 90414, 90550
-recovered pasa_asmbl_4379.p1, internal, 91135, 91358
-recovered pasa_asmbl_4379.p1, internal, 91558, 91813
-recovered pasa_asmbl_4379.p1, internal, 91946, 92057
Valid prediction for Augustus_model.g16801.t1
Valid prediction for snap_scaffold_10-snap.890-T1
Valid prediction for GeneMark_model.42806_t
Valid prediction for GlimmerHMM_glimmerT_25042-T1
Valid prediction for snap_scaffold_10-snap.874-T1
Valid prediction for HiQ_model.g16805.t1
Valid prediction for snap_scaffold_10-snap.889-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.42788_t
Valid prediction for GeneMark_model.42790_t
Valid prediction for snap_scaffold_10-snap.884-T1
Valid prediction for GeneMark_model.42845_t
Valid prediction for GeneMark_model.42802_t
Valid prediction for snap_scaffold_10-snap.849-T1
Valid prediction for GeneMark_model.42856_t
Valid prediction for snap_scaffold_10-snap.878-T1
Valid prediction for GeneMark_model.42817_t
Valid prediction for Augustus_model.g16810.t1
Valid prediction for snap_scaffold_10-snap.846-T1
Valid prediction for GlimmerHMM_glimmerT_25062-T1
Valid prediction for GeneMark_model.42834_t
Valid prediction for GeneMark_model.42836_t
Valid prediction for GeneMark_model.42838_t
Valid prediction for GlimmerHMM_glimmerT_25040-T1
Valid prediction for GeneMark_model.42829_t
Valid prediction for Augustus_model.g16797.t1
Valid prediction for GeneMark_model.42784_t
Valid prediction for Augustus_model.g16788.t1
Couldn't classify 80116, 81819
Sorry, prediction pasa_asmbl_4378.p1 fails validation.
(ATG)	 AC	80116-81819	AC	ACA
Valid prediction for snap_scaffold_10-snap.857-T1
Valid prediction for snap_scaffold_10-snap.855-T1
Valid prediction for snap_scaffold_10-snap.843-T1
Valid prediction for pasa_asmbl_4381.p1
Valid prediction for GeneMark_model.42851_t
Valid prediction for Augustus_model.g16790.t1
Valid prediction for GeneMark_model.42819_t
Valid prediction for GeneMark_model.42843_t
Valid prediction for CodingQuarry_transcript_5343-T1
Valid prediction for Augustus_model.g16785.t1
Valid prediction for snap_scaffold_10-snap.898-T1
Valid prediction for snap_scaffold_10-snap.867-T1
Valid prediction for GeneMark_model.42809_t
Valid prediction for snap_scaffold_10-snap.902-T1
Valid prediction for GeneMark_model.42853_t
Valid prediction for Augustus_model.g16811.t1
Valid prediction for snap_scaffold_10-snap.887-T1
Couldn't classify 33938, 34095
Sorry, prediction pasa_asmbl_4375.p1 fails validation.
(GGC)	 CA	33938-34095	GT	TGG
(GTA)	 AG	34427-34611	GT	AGG
(GTG)	 AG	34807-34894	GT	TAG
(CCC)	 AG	35031-35148	GT	AGG
(ACA)	 AG	35746-36012	CC	AGC
-recovered pasa_asmbl_4375.p1, terminal, 35746, 36012
-recovered pasa_asmbl_4375.p1, internal, 34427, 34611
-recovered pasa_asmbl_4375.p1, internal, 34807, 34894
-recovered pasa_asmbl_4375.p1, internal, 35031, 35148
Valid prediction for GlimmerHMM_glimmerT_25050-T1
Valid prediction for snap_scaffold_10-snap.852-T1
Valid prediction for GlimmerHMM_glimmerT_25045-T1
Valid prediction for GeneMark_model.42855_t
Valid prediction for GeneMark_model.42849_t
Valid prediction for GeneMark_model.42797_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_25074-T1
Valid prediction for snap_scaffold_10-snap.854-T1
Valid prediction for GlimmerHMM_glimmerT_25056-T1
Couldn't classify 62068, 62186
Sorry, prediction pasa_asmbl_3182.p1 fails validation.
(ATG)	 GG	58777-59007	GT	AGG
(GTT)	 AG	59126-59243	GT	AGG
(GCG)	 AG	59981-60214	GT	TGG
(CCA)	 AG	60578-60753	GT	AGG
(GTG)	 AG	61397-61597	GT	AGG
(CTC)	 AG	61804-61936	GT	AGG
(AGG)	 AG	62068-62186	GT	AGG
-recovered pasa_asmbl_3182.p1, initial, 58777, 59007
-recovered pasa_asmbl_3182.p1, internal, 59126, 59243
-recovered pasa_asmbl_3182.p1, internal, 59981, 60214
-recovered pasa_asmbl_3182.p1, internal, 60578, 60753
-recovered pasa_asmbl_3182.p1, internal, 61397, 61597
-recovered pasa_asmbl_3182.p1, internal, 61804, 61936
-recovered pasa_asmbl_3182.p1, internal, 62068, 62186
Valid prediction for GlimmerHMM_glimmerT_25078-T1
Valid prediction for snap_scaffold_10-snap.873-T1
Valid prediction for CodingQuarry_transcript_5350-T1
Valid prediction for Augustus_model.g16795.t1
Valid prediction for GlimmerHMM_glimmerT_25059-T1
Valid prediction for snap_scaffold_10-snap.866-T1
Valid prediction for GlimmerHMM_glimmerT_25048-T1
Valid prediction for Augustus_model.g16808.t1
Valid prediction for GlimmerHMM_glimmerT_25070-T1
Valid prediction for GeneMark_model.42854_t
Valid prediction for Augustus_model.g16812.t1
Valid prediction for GlimmerHMM_glimmerT_25073-T1
Valid prediction for GlimmerHMM_glimmerT_25038-T1
Valid prediction for snap_scaffold_10-snap.865-T1
Valid prediction for snap_scaffold_10-snap.900-T1
Valid prediction for GlimmerHMM_glimmerT_25079-T1
Valid prediction for GlimmerHMM_glimmerT_25057-T1
Valid prediction for GeneMark_model.42848_t
Valid prediction for GlimmerHMM_glimmerT_25072-T1
Valid prediction for snap_scaffold_10-snap.860-T1
Valid prediction for GlimmerHMM_glimmerT_25081-T1
Valid prediction for GeneMark_model.42852_t
Valid prediction for GeneMark_model.42842_t
Valid prediction for GeneMark_model.42816_t
Valid prediction for CodingQuarry_transcript_5346-T1
Valid prediction for CodingQuarry_transcript_5349-T1
Valid prediction for Augustus_model.g16800.t1
Valid prediction for GlimmerHMM_glimmerT_25060-T1
Valid prediction for Augustus_model.g16809.t1
Valid prediction for snap_scaffold_10-snap.850-T1
Valid prediction for snap_scaffold_10-snap.863-T1
Valid prediction for GeneMark_model.42826_t
Valid prediction for GlimmerHMM_glimmerT_25043-T1
Valid prediction for GlimmerHMM_glimmerT_25066-T1
Valid prediction for GlimmerHMM_glimmerT_25039-T1
Valid prediction for GeneMark_model.42791_t
Valid prediction for Augustus_model.g16799.t1
Valid prediction for GlimmerHMM_glimmerT_25055-T1
Valid prediction for GeneMark_model.42837_t
Valid prediction for snap_scaffold_10-snap.856-T1
Valid prediction for GeneMark_model.42804_t
Valid prediction for snap_scaffold_10-snap.893-T1
Valid prediction for pasa_asmbl_3186.p1
Valid prediction for Augustus_model.g16796.t1
Valid prediction for snap_scaffold_10-snap.858-T1
Valid prediction for CodingQuarry_transcript_5345-T1
Valid prediction for Augustus_model.g16786.t1
Valid prediction for pasa_asmbl_3169.p1
Valid prediction for GeneMark_model.42801_t
Valid prediction for GlimmerHMM_glimmerT_25053-T1
Valid prediction for GlimmerHMM_glimmerT_25071-T1
Valid prediction for pasa_asmbl_3173.p1
Valid prediction for Augustus_model.g16807.t1
Valid prediction for Augustus_model.g16813.t1
Valid prediction for GlimmerHMM_glimmerT_25065-T1
Valid prediction for GeneMark_model.42807_t
Valid prediction for snap_scaffold_10-snap.895-T1
Valid prediction for GeneMark_model.42844_t
Valid prediction for GlimmerHMM_glimmerT_25077-T1
Valid prediction for GeneMark_model.42828_t
Valid prediction for GeneMark_model.42812_t
Valid prediction for GeneMark_model.42832_t
Valid prediction for snap_scaffold_10-snap.885-T1
Couldn't classify 80731, 80811
Sorry, prediction pasa_asmbl_3174.p1 fails validation.
(GTG)	 AG	80731-80811	GT	TGG
(GTC)	 AG	80916-81065	GT	CGG
(GTC)	 AG	81218-81361	GT	AGG
(GTG)	 AG	81515-81613	GT	AGG
(GTG)	 AG	81767-81940	GT	TGG
(GGC)	 AG	82094-82348	GT	AGG
(TGG)	 AG	84862-84957	GT	AGG
(ATC)	 AG	85123-85212	GT	AGG
(GGG)	 AG	86730-86886	GT	AGG
(ACC)	 AG	88015-88104	GT	AGG
(GAG)	 AG	89065-89099	TA	AGT
-recovered pasa_asmbl_3174.p1, terminal, 89065, 89099
-recovered pasa_asmbl_3174.p1, internal, 80731, 80811
-recovered pasa_asmbl_3174.p1, internal, 80916, 81065
-recovered pasa_asmbl_3174.p1, internal, 81218, 81361
-recovered pasa_asmbl_3174.p1, internal, 81515, 81613
-recovered pasa_asmbl_3174.p1, internal, 81767, 81940
-recovered pasa_asmbl_3174.p1, internal, 82094, 82348
-recovered pasa_asmbl_3174.p1, internal, 84862, 84957
-recovered pasa_asmbl_3174.p1, internal, 85123, 85212
-recovered pasa_asmbl_3174.p1, internal, 86730, 86886
-recovered pasa_asmbl_3174.p1, internal, 88015, 88104
Valid prediction for GeneMark_model.42810_t
Valid prediction for HiQ_model.g16793.t1
Valid prediction for GeneMark_model.42787_t
Couldn't classify 65670, 65867
Sorry, prediction pasa_asmbl_3179.p1 fails validation.
(CCT)	 CT	65670-65867	GT	CGG
(GAG)	 AG	65982-66234	GT	AGG
(ACT)	 AG	66337-66421	GT	AGG
(TGA)	 AG	66991-67180	GT	AGG
(GAG)	 AG	67279-67422	GC	AAG
-recovered pasa_asmbl_3179.p1, terminal, 67279, 67422
-recovered pasa_asmbl_3179.p1, internal, 65982, 66234
-recovered pasa_asmbl_3179.p1, internal, 66337, 66421
-recovered pasa_asmbl_3179.p1, internal, 66991, 67180
-recovered pasa_asmbl_3179.p1, internal, 67279, 67422
Valid prediction for GeneMark_model.42835_t
Valid prediction for CodingQuarry_transcript_5351-T1
Valid prediction for GeneMark_model.42785_t
Valid prediction for Augustus_model.g16798.t1
Valid prediction for snap_scaffold_10-snap.892-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for HiQ_model.g16803.t1
Valid prediction for GeneMark_model.42830_t
Valid prediction for Augustus_model.g16814.t1
Valid prediction for GeneMark_model.42805_t
Valid prediction for snap_scaffold_10-snap.868-T1
Valid prediction for GeneMark_model.42857_t
Valid prediction for Augustus_model.g16804.t1
Valid prediction for GeneMark_model.42840_t
Valid prediction for HiQ_model.g16806.t1
Valid prediction for snap_scaffold_10-snap.847-T1
Valid prediction for GeneMark_model.42798_t
Valid prediction for GeneMark_model.42789_t
Valid prediction for GeneMark_model.42846_t
Valid prediction for GlimmerHMM_glimmerT_25080-T1
Valid prediction for snap_scaffold_10-snap.891-T1
Valid prediction for snap_scaffold_10-snap.901-T1
Valid prediction for snap_scaffold_10-snap.904-T1
Valid prediction for GeneMark_model.42803_t
Valid prediction for GeneMark_model.42822_t
Valid prediction for snap_scaffold_10-snap.845-T1
Valid prediction for snap_scaffold_10-snap.888-T1
Valid prediction for snap_scaffold_10-snap.899-T1
Valid prediction for GeneMark_model.42823_t
Valid prediction for snap_scaffold_10-snap.870-T1
Valid prediction for GeneMark_model.42795_t
Valid prediction for GeneMark_model.42818_t
Couldn't classify 79357, 79566
Couldn't classify 80417, 80457
Sorry, prediction pasa_asmbl_3178.p1 fails validation.
(GGA)	 TA	79357-79566	GT	CGG
(GCT)	 AG	80105-80267	GT	GAG
(GTC)	 AG	80417-80457	GA	CCG
add_exon() Sorry, pasa_asmbl_3178.p1 80105-80267-terminal-3 is invalid.
-recovered pasa_asmbl_3178.p1, terminal, 80105, 80267
-recovered pasa_asmbl_3178.p1, internal, 80105, 80267
Valid prediction for snap_scaffold_10-snap.851-T1
Valid prediction for GeneMark_model.42833_t
Valid prediction for snap_scaffold_10-snap.880-T1
Valid prediction for snap_scaffold_10-snap.883-T1
Valid prediction for GlimmerHMM_glimmerT_25075-T1
Valid prediction for GlimmerHMM_glimmerT_25061-T1
Valid prediction for snap_scaffold_10-snap.897-T1
Valid prediction for CodingQuarry_transcript_5348-T1
Valid prediction for snap_scaffold_10-snap.875-T1
Valid prediction for snap_scaffold_10-snap.877-T1
Valid prediction for snap_scaffold_10-snap.848-T1
Valid prediction for snap_scaffold_10-snap.872-T1
Valid prediction for Augustus_model.g16787.t1
Valid prediction for GeneMark_model.42814_t
Valid prediction for GeneMark_model.42820_t
Valid prediction for snap_scaffold_10-snap.844-T1
Valid prediction for GeneMark_model.42839_t
Valid prediction for GeneMark_model.42793_t
Valid prediction for GeneMark_model.42831_t
Valid prediction for snap_scaffold_10-snap.903-T1
Valid prediction for GlimmerHMM_glimmerT_25069-T1
Valid prediction for GeneMark_model.42850_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14964, rend_intergenic: 5368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16596, rend_intergenic: 15937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25436, rend_intergenic: 17510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32646, rend_intergenic: 28365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36012, rend_intergenic: 33849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43578, rend_intergenic: 37573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46133, rend_intergenic: 44580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48547, rend_intergenic: 47159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50213, rend_intergenic: 48679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58116, rend_intergenic: 50304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85883, rend_intergenic: 83509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87535, rend_intergenic: 85930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102412, rend_intergenic: 99453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117644, rend_intergenic: 113872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122364, rend_intergenic: 118216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129535, rend_intergenic: 122370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141400, rend_intergenic: 141228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144759, rend_intergenic: 141420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152196, rend_intergenic: 151932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162989, rend_intergenic: 156758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173935, rend_intergenic: 166494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178878, rend_intergenic: 176975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189131, rend_intergenic: 186038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205266, rend_intergenic: 199951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209864, rend_intergenic: 205300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230122, rend_intergenic: 223134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233369, rend_intergenic: 230757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238658, rend_intergenic: 235821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245384, rend_intergenic: 242497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 268502
-exon list size: 1047


building trellis

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22.9    
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23.5    
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23.8    
23.9    
24.0    
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24.9    
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27.6    
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27.8    
27.9    
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29.6    
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29.9    
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30.8    
30.9    
31.0    
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31.2    
31.3    
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31.6    
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31.8    
31.9    
32.0    
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32.2    
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32.4    
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32.6    
32.7    
32.8    
32.9    
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33.2    
33.3    
33.4    
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33.7    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
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34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
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35.3    
35.4    
35.5    
35.6    
35.7    
35.7    
35.8    
35.9    
36.0    
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36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
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39.6    
39.7    
39.8    
39.8    
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40.4    
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40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
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50.7    
50.8    
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51.0    
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51.3    
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51.8    
51.9    
52.0    
52.0    
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52.2    
52.3    
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52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 55 predictions from path traversal
Error with prediction: snap lend_intergenic: 14964, rend_intergenic: 5368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16596, rend_intergenic: 15937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25436, rend_intergenic: 17510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32646, rend_intergenic: 28365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36012, rend_intergenic: 33849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43578, rend_intergenic: 37573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46133, rend_intergenic: 44580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48547, rend_intergenic: 47159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50213, rend_intergenic: 48679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58116, rend_intergenic: 50304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85883, rend_intergenic: 83509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87535, rend_intergenic: 85930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102412, rend_intergenic: 99453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117644, rend_intergenic: 113872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122364, rend_intergenic: 118216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129535, rend_intergenic: 122370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141400, rend_intergenic: 141228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144759, rend_intergenic: 141420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152196, rend_intergenic: 151932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162989, rend_intergenic: 156758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173935, rend_intergenic: 166494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178878, rend_intergenic: 176975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189131, rend_intergenic: 186038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205266, rend_intergenic: 199951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209864, rend_intergenic: 205300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230122, rend_intergenic: 223134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233369, rend_intergenic: 230757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238658, rend_intergenic: 235821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245384, rend_intergenic: 242497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support