-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_2997211-3240741 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.42506_t Valid prediction for snap_scaffold_10-snap.652-T1 Valid prediction for snap_scaffold_10-snap.695-T1 Valid prediction for GlimmerHMM_glimmerT_24905-T1 Valid prediction for snap_scaffold_10-snap.642-T1 Valid prediction for GeneMark_model.42527_t Valid prediction for HiQ_model.g16695.t1 Valid prediction for Augustus_model.g16704.t1 Valid prediction for GeneMark_model.42555_t Valid prediction for Augustus_model.g16688.t1 Valid prediction for GlimmerHMM_glimmerT_24895-T1 Valid prediction for GeneMark_model.42550_t Valid prediction for GeneMark_model.42529_t Valid prediction for GeneMark_model.42558_t Valid prediction for snap_scaffold_10-snap.653-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_10-snap.672-T1 Valid prediction for snap_scaffold_10-snap.684-T1 Valid prediction for GeneMark_model.42543_t Valid prediction for GeneMark_model.42567_t Valid prediction for snap_scaffold_10-snap.668-T1 Valid prediction for GeneMark_model.42532_t Valid prediction for GeneMark_model.42531_t Valid prediction for GlimmerHMM_glimmerT_24883-T1 Couldn't classify 26456, 26477 Couldn't classify 29633, 29908 Sorry, prediction pasa_asmbl_4297.p1 fails validation. (ACC) GC 26456-26477 GT GCG (CTC) AG 26710-26852 GT AGG (ACC) AG 27308-27369 GT AGG (GGA) AG 27653-27791 GT GGG (ACC) AG 27899-28141 GC AGG (GAT) AG 28270-28367 GT AGG (GTT) AG 28710-28791 GT CGG (TGT) AG 28941-29058 GT GGG (CTT) AG 29157-29268 GT AGG (CCT) AG 29393-29498 GT AGG (GTG) AG 29633-29908 GG CAG -recovered pasa_asmbl_4297.p1, internal, 26710, 26852 -recovered pasa_asmbl_4297.p1, internal, 27308, 27369 -recovered pasa_asmbl_4297.p1, internal, 27653, 27791 -recovered pasa_asmbl_4297.p1, internal, 27899, 28141 -recovered pasa_asmbl_4297.p1, internal, 28270, 28367 -recovered pasa_asmbl_4297.p1, internal, 28710, 28791 -recovered pasa_asmbl_4297.p1, internal, 28941, 29058 -recovered pasa_asmbl_4297.p1, internal, 29157, 29268 -recovered pasa_asmbl_4297.p1, internal, 29393, 29498 Valid prediction for GlimmerHMM_glimmerT_24893-T1 Valid prediction for GeneMark_model.42569_t Valid prediction for pasa_asmbl_4299.p1 Valid prediction for snap_scaffold_10-snap.689-T1 Valid prediction for snap_scaffold_10-snap.664-T1 Valid prediction for snap_scaffold_10-snap.685-T1 Valid prediction for snap_scaffold_10-snap.669-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_24915-T1 Valid prediction for snap_scaffold_10-snap.659-T1 Valid prediction for GlimmerHMM_glimmerT_24898-T1 Valid prediction for snap_scaffold_10-snap.677-T1 Valid prediction for GeneMark_model.42557_t Valid prediction for GlimmerHMM_glimmerT_24896-T1 Valid prediction for GlimmerHMM_glimmerT_24886-T1 Valid prediction for GlimmerHMM_glimmerT_24882-T1 Valid prediction for GeneMark_model.42516_t Valid prediction for GlimmerHMM_glimmerT_24887-T1 Valid prediction for GeneMark_model.42561_t Valid prediction for GeneMark_model.42517_t Valid prediction for snap_scaffold_10-snap.662-T1 Valid prediction for GeneMark_model.42553_t Valid prediction for snap_scaffold_10-snap.693-T1 Valid prediction for GeneMark_model.42545_t Valid prediction for HiQ_model.g16678.t1 Couldn't classify 31233, 31382 Couldn't classify 33809, 33880 Sorry, prediction pasa_asmbl_5088.p1 fails validation. (CCC) CC 31233-31382 GT TGG (GGC) AG 31474-31521 GT TGG (GGC) AG 31617-31784 GT AGG (GGA) AG 32243-32344 GT CTG (ATT) AG 32529-32585 GT AGG (AGC) AG 32747-32870 GT AGG (GCA) AG 32968-33111 GT AGG (CCT) AG 33597-33688 GT AGG (ATG) AG 33809-33880 GT AGG -recovered pasa_asmbl_5088.p1, initial, 33809, 33880 -recovered pasa_asmbl_5088.p1, internal, 31474, 31521 -recovered pasa_asmbl_5088.p1, internal, 31617, 31784 -recovered pasa_asmbl_5088.p1, internal, 32243, 32344 -recovered pasa_asmbl_5088.p1, internal, 32529, 32585 -recovered pasa_asmbl_5088.p1, internal, 32747, 32870 -recovered pasa_asmbl_5088.p1, internal, 32968, 33111 -recovered pasa_asmbl_5088.p1, internal, 33597, 33688 -recovered pasa_asmbl_5088.p1, internal, 33809, 33880 Valid prediction for CodingQuarry_transcript_5309-T1 Valid prediction for GlimmerHMM_glimmerT_24903-T1 Valid prediction for GlimmerHMM_glimmerT_24916-T1 Valid prediction for snap_scaffold_10-snap.648-T1 Valid prediction for GeneMark_model.42537_t Valid prediction for pasa_asmbl_4306.p1 Valid prediction for GeneMark_model.42525_t Valid prediction for HiQ_model.g16694.t1 Couldn't classify 109175, 109276 Couldn't classify 109826, 109910 Sorry, prediction pasa_asmbl_5128.p1 fails validation. (ATT) AC 109175-109276 GT AGG (ATC) AG 109463-109590 GT AGG (GTT) AG 109826-109910 AC GGA -recovered pasa_asmbl_5128.p1, internal, 109463, 109590 Valid prediction for GlimmerHMM_glimmerT_24891-T1 Couldn't classify 23999, 24607 Couldn't classify 26294, 26428 Sorry, prediction pasa_asmbl_4296.p1 fails validation. (CCC) CT 23999-24607 GT CGG (GAC) AG 24742-24890 GT AGG (ACA) AG 25368-25459 GT AGG (ATC) AG 25546-25759 GT AGG (GAG) AG 25905-26094 GT AGG (AGC) AG 26294-26428 TA CCT -recovered pasa_asmbl_4296.p1, internal, 24742, 24890 -recovered pasa_asmbl_4296.p1, internal, 25368, 25459 -recovered pasa_asmbl_4296.p1, internal, 25546, 25759 -recovered pasa_asmbl_4296.p1, internal, 25905, 26094 Valid prediction for GlimmerHMM_glimmerT_24880-T1 Valid prediction for GeneMark_model.42534_t Valid prediction for snap_scaffold_10-snap.658-T1 Valid prediction for snap_scaffold_10-snap.692-T1 Couldn't classify 21353, 23557 Sorry, prediction pasa_asmbl_4295.p1 fails validation. (CCA) AG 21353-23557 GT GTG -recovered pasa_asmbl_4295.p1, internal, 21353, 23557 Valid prediction for Augustus_model.g16689.t1 Couldn't classify 79748, 79863 Sorry, prediction pasa_asmbl_4304.p1 fails validation. (GCT) AG 79748-79863 GT ATG (GGT) AG 80720-80806 GT AAG (GAT) AG 80959-81103 GT ATG (GAC) AG 82101-82213 GT AGG (ATG) AG 82380-82472 GT AGG (GTT) AG 82636-83098 TT GAT add_exon() Sorry, pasa_asmbl_4304.p1 82380-82472-initial-1 is invalid. -recovered pasa_asmbl_4304.p1, initial, 82380, 82472 -recovered pasa_asmbl_4304.p1, terminal, 82101, 82213 -recovered pasa_asmbl_4304.p1, terminal, 82636, 83098 -recovered pasa_asmbl_4304.p1, internal, 79748, 79863 -recovered pasa_asmbl_4304.p1, internal, 80720, 80806 -recovered pasa_asmbl_4304.p1, internal, 80959, 81103 -recovered pasa_asmbl_4304.p1, internal, 82101, 82213 -recovered pasa_asmbl_4304.p1, internal, 82380, 82472 Valid prediction for GlimmerHMM_glimmerT_24914-T1 Valid prediction for GeneMark_model.42500_t Valid prediction for GeneMark_model.42548_t Valid prediction for GeneMark_model.42510_t Valid prediction for snap_scaffold_10-snap.646-T1 Valid prediction for Augustus_model.g16677.t1 Valid prediction for GlimmerHMM_glimmerT_24913-T1 Valid prediction for GeneMark_model.42520_t Valid prediction for GlimmerHMM_glimmerT_24894-T1 Valid prediction for snap_scaffold_10-snap.673-T1 Valid prediction for CodingQuarry_transcript_5316-T1 Valid prediction for pasa_asmbl_4310.p2 Valid prediction for Augustus_model.g16676.t1 Valid prediction for Augustus_model.g16703.t1 Valid prediction for GlimmerHMM_glimmerT_24899-T1 Valid prediction for snap_scaffold_10-snap.644-T1 Valid prediction for snap_scaffold_10-snap.657-T1 Valid prediction for GeneMark_model.42546_t Valid prediction for GeneMark_model.42512_t Valid prediction for snap_scaffold_10-snap.674-T1 Valid prediction for GlimmerHMM_glimmerT_24904-T1 Couldn't classify 29816, 29845 Couldn't classify 30925, 30971 Sorry, prediction pasa_asmbl_4298.p1 fails validation. (TCC) AC 29816-29845 GT AGG (ATG) AG 30321-30434 GT GGG (ACG) AG 30609-30810 GT AGG (CTC) AG 30925-30971 CC CCC -recovered pasa_asmbl_4298.p1, initial, 30321, 30434 -recovered pasa_asmbl_4298.p1, internal, 30321, 30434 -recovered pasa_asmbl_4298.p1, internal, 30609, 30810 Valid prediction for HiQ_model.g16681.t1 Valid prediction for GeneMark_model.42508_t Valid prediction for snap_scaffold_10-snap.681-T1 Valid prediction for snap_scaffold_10-snap.691-T1 Valid prediction for GeneMark_model.42563_t Valid prediction for snap_scaffold_10-snap.680-T1 Valid prediction for GeneMark_model.42559_t Valid prediction for GeneMark_model.42502_t Valid prediction for GeneMark_model.42565_t Valid prediction for pasa_asmbl_4308.p1 Valid prediction for GeneMark_model.42521_t Valid prediction for Augustus_model.g16682.t1 Valid prediction for Augustus_model.g16701.t1 Valid prediction for snap_scaffold_10-snap.687-T1 Valid prediction for GeneMark_model.42519_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.671-T1 Couldn't classify 43025, 43078 Sorry, prediction pasa_asmbl_3093.p1 fails validation. (CCC) CC 43025-43078 GT AGG (GAG) AG 43400-43473 GT AAG (AGA) AG 44112-44258 GT GGG (GAT) AG 44452-44500 CA AAC -recovered pasa_asmbl_3093.p1, terminal, 44452, 44500 -recovered pasa_asmbl_3093.p1, internal, 43400, 43473 -recovered pasa_asmbl_3093.p1, internal, 44112, 44258 Valid prediction for Augustus_model.g16679.t1 Couldn't classify 202500, 202542 Sorry, prediction pasa_asmbl_3061.p1 fails validation. (CTG) AT 202500-202542 GT AGG (GCA) AG 202720-202834 GT AGG (GAA) AG 203028-203140 GT TGG (GGA) AG 203402-203501 GT GAG (GCA) AG 203708-203829 GT TGG (GAA) AG 204049-204143 GT TGG (GTA) AG 205844-205855 AG AGA -recovered pasa_asmbl_3061.p1, terminal, 205844, 205855 -recovered pasa_asmbl_3061.p1, internal, 202720, 202834 -recovered pasa_asmbl_3061.p1, internal, 203028, 203140 -recovered pasa_asmbl_3061.p1, internal, 203402, 203501 -recovered pasa_asmbl_3061.p1, internal, 203708, 203829 -recovered pasa_asmbl_3061.p1, internal, 204049, 204143 Valid prediction for snap_scaffold_10-snap.690-T1 Couldn't classify 176497, 176605 Sorry, prediction pasa_asmbl_3068.p1 fails validation. (GCT) GA 176497-176605 GT TGG (GGT) AG 176883-177012 GT ATG (AGT) AG 177275-177352 GT ATG (CCA) AG 177760-177853 TT GAT -recovered pasa_asmbl_3068.p1, terminal, 177760, 177853 -recovered pasa_asmbl_3068.p1, internal, 176883, 177012 -recovered pasa_asmbl_3068.p1, internal, 177275, 177352 Couldn't classify 92087, 92203 Sorry, prediction pasa_asmbl_3088.p1 fails validation. (GGG) CG 92087-92203 GT AGG (GTC) AG 92337-92511 GT TGG (CCG) AG 92684-92819 GT AGG (CTT) AG 92958-93092 GT GAG (GGA) AG 93196-93319 GT CGG (GAT) AG 93572-93637 GT AGG (GAA) AG 93727-93798 GT CTG (AAT) AG 93898-93945 GT TGG (GCT) AG 94101-94172 AA AAA -recovered pasa_asmbl_3088.p1, terminal, 94101, 94172 -recovered pasa_asmbl_3088.p1, internal, 92337, 92511 -recovered pasa_asmbl_3088.p1, internal, 92684, 92819 -recovered pasa_asmbl_3088.p1, internal, 92958, 93092 -recovered pasa_asmbl_3088.p1, internal, 93196, 93319 -recovered pasa_asmbl_3088.p1, internal, 93572, 93637 -recovered pasa_asmbl_3088.p1, internal, 93727, 93798 -recovered pasa_asmbl_3088.p1, internal, 93898, 93945 Valid prediction for Augustus_model.g16698.t1 Valid prediction for GeneMark_model.42560_t Valid prediction for CodingQuarry_transcript_5313-T1 Valid prediction for snap_scaffold_10-snap.683-T1 Valid prediction for GlimmerHMM_glimmerT_24884-T1 Valid prediction for GeneMark_model.42547_t Valid prediction for GlimmerHMM_glimmerT_24889-T1 Valid prediction for GlimmerHMM_glimmerT_24888-T1 Valid prediction for GeneMark_model.42544_t Valid prediction for GlimmerHMM_glimmerT_24890-T1 Valid prediction for CodingQuarry_transcript_5311-T1 Valid prediction for GeneMark_model.42507_t Valid prediction for GeneMark_model.42514_t Couldn't classify 64833, 64978 Sorry, prediction pasa_asmbl_3090.p1 fails validation. (TGG) AT 64833-64978 GT AGG (AGC) AG 65389-65582 GT AAG (AGC) AG 65900-66089 GT CGG (GGC) AG 66223-66351 GT TGG (CCC) AG 66541-66670 GT AGG (GTG) AG 66830-66901 GT GGG (TTG) AG 67187-67334 GT TGG (GTC) AG 68730-68864 GT TGG (CTT) AG 68959-69008 GT TGG (TGG) AG 69157-69414 AC AGA -recovered pasa_asmbl_3090.p1, terminal, 69157, 69414 -recovered pasa_asmbl_3090.p1, internal, 65389, 65582 -recovered pasa_asmbl_3090.p1, internal, 65900, 66089 -recovered pasa_asmbl_3090.p1, internal, 66223, 66351 -recovered pasa_asmbl_3090.p1, internal, 66541, 66670 -recovered pasa_asmbl_3090.p1, internal, 66830, 66901 -recovered pasa_asmbl_3090.p1, internal, 67187, 67334 -recovered pasa_asmbl_3090.p1, internal, 68730, 68864 -recovered pasa_asmbl_3090.p1, internal, 68959, 69008 Valid prediction for GeneMark_model.42503_t Valid prediction for GeneMark_model.42505_t Valid prediction for HiQ_model.g16683.t1 Valid prediction for snap_scaffold_10-snap.694-T1 Valid prediction for snap_scaffold_10-snap.675-T1 Valid prediction for GeneMark_model.42522_t Valid prediction for GlimmerHMM_glimmerT_24908-T1 Valid prediction for pasa_asmbl_3062.p1 Valid prediction for GlimmerHMM_glimmerT_24907-T1 Couldn't classify 96693, 97055 Sorry, prediction pasa_asmbl_3086.p1 fails validation. (GCG) AT 96693-97055 GG CAG Valid prediction for snap_scaffold_10-snap.650-T1 Valid prediction for snap_scaffold_10-snap.678-T1 Valid prediction for HiQ_model.g16700.t1 Valid prediction for GeneMark_model.42535_t Valid prediction for Augustus_model.g16697.t1 Valid prediction for GlimmerHMM_glimmerT_24901-T1 Valid prediction for snap_scaffold_10-snap.688-T1 Valid prediction for GeneMark_model.42554_t Valid prediction for GlimmerHMM_glimmerT_24879-T1 Valid prediction for CodingQuarry_transcript_5315-T1 Valid prediction for snap_scaffold_10-snap.660-T1 Valid prediction for snap_scaffold_10-snap.656-T1 Valid prediction for GeneMark_model.42509_t Valid prediction for GeneMark_model.42518_t Valid prediction for CodingQuarry_transcript_5312-T1 Valid prediction for GlimmerHMM_glimmerT_24885-T1 Valid prediction for HiQ_model.g16686.t1 Valid prediction for snap_scaffold_10-snap.649-T1 Valid prediction for Augustus_model.g16684.t1 Valid prediction for GeneMark_model.42566_t Valid prediction for GlimmerHMM_glimmerT_24911-T1 Valid prediction for GlimmerHMM_glimmerT_24910-T1 Valid prediction for Augustus_model.g16680.t1 Valid prediction for GeneMark_model.42542_t Valid prediction for GeneMark_model.42562_t Valid prediction for snap_scaffold_10-snap.670-T1 Valid prediction for GeneMark_model.42538_t Valid prediction for GeneMark_model.42530_t Valid prediction for GeneMark_model.42513_t Couldn't classify 5667, 5978 Sorry, prediction pasa_asmbl_4311.p1 fails validation. (TTC) TG 5667-5978 AT AAA Valid prediction for GeneMark_model.42504_t Valid prediction for GeneMark_model.42551_t Valid prediction for GlimmerHMM_glimmerT_24897-T1 Valid prediction for snap_scaffold_10-snap.654-T1 Valid prediction for snap_scaffold_10-snap.645-T1 Valid prediction for snap_scaffold_10-snap.676-T1 Valid prediction for GeneMark_model.42564_t Couldn't classify 188862, 188985 Sorry, prediction pasa_asmbl_3064.p1 fails validation. (GGC) CC 188862-188985 GT CGG (GGG) AG 189277-189563 GT AGG (ATA) AG 189665-189812 GT AGG (GTG) AG 190369-190730 CA GAC -recovered pasa_asmbl_3064.p1, terminal, 190369, 190730 -recovered pasa_asmbl_3064.p1, internal, 189277, 189563 -recovered pasa_asmbl_3064.p1, internal, 189665, 189812 Valid prediction for GlimmerHMM_glimmerT_24900-T1 Valid prediction for GeneMark_model.42568_t Valid prediction for GeneMark_model.42552_t Couldn't classify 96219, 96638 Sorry, prediction pasa_asmbl_3087.p1 fails validation. (ATG) GC 96219-96638 GA GGG Couldn't classify 183229, 183277 Couldn't classify 187587, 187723 Sorry, prediction pasa_asmbl_3065.p1 fails validation. (CGA) TG 183229-183277 GT AGG (TCA) AG 184946-185062 GT TCG (CTG) AG 186715-186855 GT AGG (CCA) AG 187151-187294 GT AGG (GTA) AG 187587-187723 TA CGT -recovered pasa_asmbl_3065.p1, internal, 184946, 185062 -recovered pasa_asmbl_3065.p1, internal, 186715, 186855 -recovered pasa_asmbl_3065.p1, internal, 187151, 187294 Valid prediction for CodingQuarry_transcript_5319-T1 Valid prediction for GeneMark_model.42501_t Valid prediction for HiQ_model.g16687.t1 Valid prediction for Augustus_model.g16690.t1 Valid prediction for snap_scaffold_10-snap.643-T1 Valid prediction for GeneMark_model.42536_t Valid prediction for GeneMark_model.42515_t Valid prediction for GlimmerHMM_glimmerT_24902-T1 Valid prediction for GeneMark_model.42549_t Valid prediction for snap_scaffold_10-snap.667-T1 Valid prediction for GlimmerHMM_glimmerT_24892-T1 Valid prediction for GlimmerHMM_glimmerT_24881-T1 Valid prediction for GlimmerHMM_glimmerT_24906-T1 Valid prediction for snap_scaffold_10-snap.663-T1 Valid prediction for Augustus_model.g16692.t1 Valid prediction for Augustus_model.g16696.t1 Valid prediction for snap_scaffold_10-snap.647-T1 Valid prediction for snap_scaffold_10-snap.661-T1 Valid prediction for snap_scaffold_10-snap.665-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_10-snap.655-T1 Valid prediction for HiQ_model.g16699.t1 Valid prediction for CodingQuarry_transcript_5318-T1 Couldn't classify 173750, 173773 Sorry, prediction pasa_asmbl_3069.p2 fails validation. (TCA) TT 173750-173773 GT TGG (ACG) AG 174534-174669 GT GTG (ACA) AG 174948-175032 GT AGG (GAA) AG 175564-175633 AT AGA -recovered pasa_asmbl_3069.p2, terminal, 175564, 175633 -recovered pasa_asmbl_3069.p2, internal, 174534, 174669 -recovered pasa_asmbl_3069.p2, internal, 174948, 175032 Valid prediction for GeneMark_model.42526_t Valid prediction for GeneMark_model.42539_t Valid prediction for HiQ_model.g16691.t1 Valid prediction for GeneMark_model.42524_t Valid prediction for snap_scaffold_10-snap.651-T1 Valid prediction for snap_scaffold_10-snap.679-T1 Valid prediction for snap_scaffold_10-snap.666-T1 Valid prediction for pasa_asmbl_3092.p1 Valid prediction for GeneMark_model.42533_t Couldn't classify 119807, 119817 Couldn't classify 121706, 121810 Sorry, prediction pasa_asmbl_3076.p1 fails validation. (CCA) TC 119807-119817 GT AGG (CAG) AG 120045-120176 GT TGG (GGA) AG 120498-120624 GT TGG (GTT) AG 121008-121112 GT AGG (GAA) AG 121389-121484 GT AGG (AGG) AG 121706-121810 TA GGT -recovered pasa_asmbl_3076.p1, internal, 120045, 120176 -recovered pasa_asmbl_3076.p1, internal, 120498, 120624 -recovered pasa_asmbl_3076.p1, internal, 121008, 121112 -recovered pasa_asmbl_3076.p1, internal, 121389, 121484 Valid prediction for GeneMark_model.42528_t Valid prediction for GeneMark_model.42511_t Valid prediction for Augustus_model.g16702.t1 Valid prediction for GeneMark_model.42540_t Valid prediction for GeneMark_model.42556_t Valid prediction for GlimmerHMM_glimmerT_24912-T1 Valid prediction for Augustus_model.g16685.t1 Valid prediction for HiQ_model.g16693.t1 Valid prediction for snap_scaffold_10-snap.686-T1 Valid prediction for CodingQuarry_transcript_5310-T1 Valid prediction for GeneMark_model.42541_t Valid prediction for snap_scaffold_10-snap.682-T1 Couldn't classify 104130, 104242 Sorry, prediction pasa_asmbl_3085.p2 fails validation. (GGC) CA 104130-104242 GT AGG (ATG) AG 104410-104599 AC GAA -recovered pasa_asmbl_3085.p2, terminal, 104410, 104599 Valid prediction for GlimmerHMM_glimmerT_24909-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 163127, rend_intergenic: 163124 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 9947, rend_intergenic: 2812 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 13002, rend_intergenic: 10138 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16674, rend_intergenic: 13823 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26876, rend_intergenic: 25542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32853, rend_intergenic: 27188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 36593, rend_intergenic: 32981 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49483, rend_intergenic: 48140 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57766, rend_intergenic: 55767 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91778, rend_intergenic: 89038 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115938, rend_intergenic: 100115 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127652, rend_intergenic: 122962 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145957, rend_intergenic: 138933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176378, rend_intergenic: 172057 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191640, rend_intergenic: 182062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199819, rend_intergenic: 192186 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202045, rend_intergenic: 200383 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216369, rend_intergenic: 204958 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217030, rend_intergenic: 216416 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222546, rend_intergenic: 221617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227187, rend_intergenic: 222634 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237255, rend_intergenic: 236907 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241497, rend_intergenic: 239876 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 243531 -exon list size: 1116 building trellis 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.6 99.7 99.8 99.9 -found 51 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 163127, rend_intergenic: 163124 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 9947, rend_intergenic: 2812 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 13002, rend_intergenic: 10138 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16674, rend_intergenic: 13823 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26876, rend_intergenic: 25542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32853, rend_intergenic: 27188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 36593, rend_intergenic: 32981 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49483, rend_intergenic: 48140 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57766, rend_intergenic: 55767 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91778, rend_intergenic: 89038 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115938, rend_intergenic: 100115 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127652, rend_intergenic: 122962 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145957, rend_intergenic: 138933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176378, rend_intergenic: 172057 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191640, rend_intergenic: 182062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199819, rend_intergenic: 192186 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202045, rend_intergenic: 200383 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216369, rend_intergenic: 204958 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217030, rend_intergenic: 216416 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222546, rend_intergenic: 221617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227187, rend_intergenic: 222634 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237255, rend_intergenic: 236907 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241497, rend_intergenic: 239876 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 32 predictions persist after filtering for low support