-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_2254720-2421476

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g16602.t1
Valid prediction for Augustus_model.g16611.t1
Valid prediction for GeneMark_model.42317_t
Valid prediction for GlimmerHMM_glimmerT_24772-T1
Valid prediction for snap_scaffold_10-snap.507-T1
Valid prediction for snap_scaffold_10-snap.508-T1
Valid prediction for snap_scaffold_10-snap.503-T1
Valid prediction for Augustus_model.g16604.t1
Valid prediction for GeneMark_model.42334_t
Valid prediction for GlimmerHMM_glimmerT_24787-T1
Valid prediction for GeneMark_model.42338_t
Valid prediction for GlimmerHMM_glimmerT_24767-T1
Valid prediction for GeneMark_model.42327_t
Valid prediction for snap_scaffold_10-snap.493-T1
Valid prediction for snap_scaffold_10-snap.484-T1
Valid prediction for GlimmerHMM_glimmerT_24781-T1
Valid prediction for snap_scaffold_10-snap.498-T1
Valid prediction for GeneMark_model.42309_t
Valid prediction for Augustus_model.g16613.t1
Valid prediction for GlimmerHMM_glimmerT_24771-T1
Valid prediction for GlimmerHMM_glimmerT_24773-T1
Valid prediction for GlimmerHMM_glimmerT_24789-T1
Valid prediction for GeneMark_model.42320_t
Valid prediction for snap_scaffold_10-snap.480-T1
Valid prediction for Augustus_model.g16608.t1
Valid prediction for snap_scaffold_10-snap.485-T1
Valid prediction for GeneMark_model.42323_t
Valid prediction for GeneMark_model.42336_t
Valid prediction for GeneMark_model.42331_t
Valid prediction for GeneMark_model.42308_t
Valid prediction for snap_scaffold_10-snap.501-T1
Valid prediction for GeneMark_model.42300_t
Valid prediction for GeneMark_model.42310_t
Valid prediction for snap_scaffold_10-snap.491-T1
Valid prediction for snap_scaffold_10-snap.488-T1
Valid prediction for GeneMark_model.42321_t
Valid prediction for GeneMark_model.42312_t
Valid prediction for GlimmerHMM_glimmerT_24783-T1
Valid prediction for Augustus_model.g16603.t1
Valid prediction for GeneMark_model.42315_t
Valid prediction for GeneMark_model.42329_t
Valid prediction for GeneMark_model.42302_t
Valid prediction for GeneMark_model.42337_t
Valid prediction for GeneMark_model.42305_t
Valid prediction for snap_scaffold_10-snap.504-T1
Valid prediction for snap_scaffold_10-snap.499-T1
Valid prediction for GeneMark_model.42325_t
Valid prediction for GeneMark_model.42340_t
Valid prediction for GlimmerHMM_glimmerT_24779-T1
Valid prediction for GeneMark_model.42294_t
Valid prediction for GlimmerHMM_glimmerT_24782-T1
Valid prediction for Augustus_model.g16609.t1
Valid prediction for snap_scaffold_10-snap.496-T1
Valid prediction for snap_scaffold_10-snap.489-T1
Valid prediction for GlimmerHMM_glimmerT_24768-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.494-T1
Valid prediction for snap_scaffold_10-snap.505-T1
Valid prediction for snap_scaffold_10-snap.495-T1
Valid prediction for GlimmerHMM_glimmerT_24786-T1
Valid prediction for GeneMark_model.42295_t
Valid prediction for GeneMark_model.42298_t
Valid prediction for GeneMark_model.42299_t
Valid prediction for GlimmerHMM_glimmerT_24791-T1
Valid prediction for snap_scaffold_10-snap.500-T1
Valid prediction for snap_scaffold_10-snap.481-T1
Valid prediction for GeneMark_model.42322_t
Valid prediction for GlimmerHMM_glimmerT_24784-T1
Valid prediction for GeneMark_model.42307_t
Valid prediction for Augustus_model.g16607.t1
Valid prediction for snap_scaffold_10-snap.490-T1
Valid prediction for GeneMark_model.42326_t
Valid prediction for Augustus_model.g16610.t1
Valid prediction for GeneMark_model.42306_t
Valid prediction for GeneMark_model.42303_t
Valid prediction for GeneMark_model.42333_t
Valid prediction for GlimmerHMM_glimmerT_24775-T1
Valid prediction for snap_scaffold_10-snap.497-T1
Valid prediction for Augustus_model.g16612.t1
Valid prediction for GlimmerHMM_glimmerT_24778-T1
Valid prediction for snap_scaffold_10-snap.486-T1
Valid prediction for GeneMark_model.42301_t
Valid prediction for GeneMark_model.42328_t
Valid prediction for GeneMark_model.42316_t
Valid prediction for GeneMark_model.42339_t
Valid prediction for GlimmerHMM_glimmerT_24776-T1
Valid prediction for GeneMark_model.42332_t
Valid prediction for GeneMark_model.42313_t
Valid prediction for GlimmerHMM_glimmerT_24777-T1
Valid prediction for GlimmerHMM_glimmerT_24774-T1
Valid prediction for GeneMark_model.42335_t
Valid prediction for snap_scaffold_10-snap.482-T1
Valid prediction for GlimmerHMM_glimmerT_24795-T1
Valid prediction for snap_scaffold_10-snap.511-T1
Valid prediction for GeneMark_model.42330_t
Valid prediction for snap_scaffold_10-snap.479-T1
Valid prediction for GlimmerHMM_glimmerT_24788-T1
Valid prediction for GeneMark_model.42296_t
Valid prediction for GlimmerHMM_glimmerT_24785-T1
Valid prediction for Augustus_model.g16606.t1
Valid prediction for GeneMark_model.42318_t
Valid prediction for snap_scaffold_10-snap.492-T1
Valid prediction for GeneMark_model.42324_t
Valid prediction for GeneMark_model.42297_t
Valid prediction for snap_scaffold_10-snap.502-T1
Valid prediction for GlimmerHMM_glimmerT_24794-T1
Valid prediction for GlimmerHMM_glimmerT_24790-T1
Valid prediction for GlimmerHMM_glimmerT_24793-T1
Valid prediction for GeneMark_model.42311_t
Valid prediction for GeneMark_model.42319_t
Valid prediction for GlimmerHMM_glimmerT_24769-T1
Valid prediction for GeneMark_model.42304_t
Valid prediction for snap_scaffold_10-snap.487-T1
Valid prediction for snap_scaffold_10-snap.509-T1
Valid prediction for GlimmerHMM_glimmerT_24780-T1
Valid prediction for GlimmerHMM_glimmerT_24792-T1
Valid prediction for GlimmerHMM_glimmerT_24770-T1
Valid prediction for snap_scaffold_10-snap.483-T1
Valid prediction for Augustus_model.g16605.t1
Valid prediction for snap_scaffold_10-snap.506-T1
Valid prediction for GeneMark_model.42314_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23566, rend_intergenic: 16536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47201, rend_intergenic: 41021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62031, rend_intergenic: 59092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69508, rend_intergenic: 63542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112066, rend_intergenic: 102625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115329, rend_intergenic: 113606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128684, rend_intergenic: 118331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136750, rend_intergenic: 128997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145770, rend_intergenic: 137363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 166757
-exon list size: 568


building trellis

0.2    
0.4    
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0.9    
1.1    
1.2    
1.4    
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2.1    
2.3    
2.5    
2.6    
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3.0    
3.2    
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3.7    
3.9    
4.0    
4.2    
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4.6    
4.7    
4.9    
5.1    
5.3    
5.4    
5.6    
5.8    
6.0    
6.1    
6.3    
6.5    
6.7    
6.8    
7.0    
7.2    
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7.5    
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7.9    
8.1    
8.2    
8.4    
8.6    
8.8    
8.9    
9.1    
9.3    
9.5    
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9.8    
10.0    
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10.5    
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10.9    
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12.1    
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13.2    
13.3    
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13.7    
13.9    
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14.6    
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14.9    
15.1    
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15.6    
15.8    
16.0    
16.1    
16.3    
16.5    
16.7    
16.8    
17.0    
17.2    
17.4    
17.5    
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17.9    
18.1    
18.2    
18.4    
18.6    
18.8    
18.9    
19.1    
19.3    
19.5    
19.6    
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20.0    
20.2    
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20.5    
20.7    
20.9    
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21.2    
21.4    
21.6    
21.8    
21.9    
22.1    
22.3    
22.5    
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22.8    
23.0    
23.2    
23.3    
23.5    
23.7    
23.9    
24.0    
24.2    
24.4    
24.6    
24.7    
24.9    
25.1    
25.3    
25.4    
25.6    
25.8    
26.0    
26.1    
26.3    
26.5    
26.7    
26.8    
27.0    
27.2    
27.4    
27.5    
27.7    
27.9    
28.1    
28.2    
28.4    
28.6    
28.8    
28.9    
29.1    
29.3    
29.5    
29.6    
29.8    
30.0    
30.2    
30.4    
30.5    
30.7    
30.9    
31.1    
31.2    
31.4    
31.6    
31.8    
31.9    
32.1    
32.3    
32.5    
32.6    
32.8    
33.0    
33.2    
33.3    
33.5    
33.7    
33.9    
34.0    
34.2    
34.4    
34.6    
34.7    
34.9    
35.1    
35.3    
35.4    
35.6    
35.8    
36.0    
36.1    
36.3    
36.5    
36.7    
36.8    
37.0    
37.2    
37.4    
37.5    
37.7    
37.9    
38.1    
38.2    
38.4    
38.6    
38.8    
38.9    
39.1    
39.3    
39.5    
39.6    
39.8    
40.0    
40.2    
40.4    
40.5    
40.7    
40.9    
41.1    
41.2    
41.4    
41.6    
41.8    
41.9    
42.1    
42.3    
42.5    
42.6    
42.8    
43.0    
43.2    
43.3    
43.5    
43.7    
43.9    
44.0    
44.2    
44.4    
44.6    
44.7    
44.9    
45.1    
45.3    
45.4    
45.6    
45.8    
46.0    
46.1    
46.3    
46.5    
46.7    
46.8    
47.0    
47.2    
47.4    
47.5    
47.7    
47.9    
48.1    
48.2    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.5    
49.6    
49.8    
50.0    
50.2    
50.4    
50.5    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.8    
51.9    
52.1    
52.3    
52.5    
52.6    
52.8    
53.0    
53.2    
53.3    
53.5    
53.7    
53.9    
54.0    
54.2    
54.4    
54.6    
54.7    
54.9    
55.1    
55.3    
55.4    
55.6    
55.8    
56.0    
56.1    
56.3    
56.5    
56.7    
56.8    
57.0    
57.2    
57.4    
57.5    
57.7    
57.9    
58.1    
58.2    
58.4    
58.6    
58.8    
58.9    
59.1    
59.3    
59.5    
59.6    
59.8    
60.0    
60.2    
60.4    
60.5    
60.7    
60.9    
61.1    
61.2    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.5    
62.6    
62.8    
63.0    
63.2    
63.3    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.6    
64.7    
64.9    
65.1    
65.3    
65.4    
65.6    
65.8    
66.0    
66.1    
66.3    
66.5    
66.7    
66.8    
67.0    
67.2    
67.4    
67.5    
67.7    
67.9    
68.1    
68.2    
68.4    
68.6    
68.8    
68.9    
69.1    
69.3    
69.5    
69.6    
69.8    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.1    
71.2    
71.4    
71.6    
71.8    
71.9    
72.1    
72.3    
72.5    
72.6    
72.8    
73.0    
73.2    
73.3    
73.5    
73.7    
73.9    
74.0    
74.2    
74.4    
74.6    
74.7    
74.9    
75.1    
75.3    
75.4    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.7    
76.8    
77.0    
77.2    
77.4    
77.5    
77.7    
77.9    
78.1    
78.2    
78.4    
78.6    
78.8    
78.9    
79.1    
79.3    
79.5    
79.6    
79.8    
80.0    
80.2    
80.4    
80.5    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.8    
81.9    
82.1    
82.3    
82.5    
82.6    
82.8    
83.0    
83.2    
83.3    
83.5    
83.7    
83.9    
84.0    
84.2    
84.4    
84.6    
84.7    
84.9    
85.1    
85.3    
85.4    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.7    
86.8    
87.0    
87.2    
87.4    
87.5    
87.7    
87.9    
88.1    
88.2    
88.4    
88.6    
88.8    
88.9    
89.1    
89.3    
89.5    
89.6    
89.8    
90.0    
90.2    
90.4    
90.5    
90.7    
90.9    
91.1    
91.2    
91.4    
91.6    
91.8    
91.9    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.9    
94.0    
94.2    
94.4    
94.6    
94.7    
94.9    
95.1    
95.3    
95.4    
95.6    
95.8    
96.0    
96.1    
96.3    
96.5    
96.7    
96.8    
97.0    
97.2    
97.4    
97.5    
97.7    
97.9    
98.1    
98.2    
98.4    
98.6    
98.8    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 23566, rend_intergenic: 16536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47201, rend_intergenic: 41021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62031, rend_intergenic: 59092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69508, rend_intergenic: 63542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112066, rend_intergenic: 102625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115329, rend_intergenic: 113606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128684, rend_intergenic: 118331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136750, rend_intergenic: 128997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145770, rend_intergenic: 137363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support