-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_2117955-2262927

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.42276_t
Valid prediction for GeneMark_model.42286_t
Valid prediction for snap_scaffold_10-snap.458-T1
Valid prediction for GeneMark_model.42281_t
Valid prediction for snap_scaffold_10-snap.466-T1
Valid prediction for GlimmerHMM_glimmerT_24766-T1
Valid prediction for Augustus_model.g16600.t1
Valid prediction for Augustus_model.g16597.t1
Valid prediction for snap_scaffold_10-snap.467-T1
Valid prediction for GlimmerHMM_glimmerT_24748-T1
Valid prediction for snap_scaffold_10-snap.473-T1
Valid prediction for GeneMark_model.42284_t
Valid prediction for GeneMark_model.42267_t
Valid prediction for GeneMark_model.42294_t
Valid prediction for GlimmerHMM_glimmerT_24763-T1
Valid prediction for snap_scaffold_10-snap.470-T1
Valid prediction for GeneMark_model.42275_t
Valid prediction for GeneMark_model.42272_t
Valid prediction for GeneMark_model.42257_t
Valid prediction for snap_scaffold_10-snap.460-T1
Valid prediction for GeneMark_model.42283_t
Valid prediction for snap_scaffold_10-snap.453-T1
Valid prediction for GeneMark_model.42259_t
Valid prediction for snap_scaffold_10-snap.476-T1
Valid prediction for GeneMark_model.42265_t
Valid prediction for GlimmerHMM_glimmerT_24742-T1
Valid prediction for GlimmerHMM_glimmerT_24753-T1
Valid prediction for GlimmerHMM_glimmerT_24761-T1
Valid prediction for GeneMark_model.42261_t
Valid prediction for GlimmerHMM_glimmerT_24758-T1
Valid prediction for GlimmerHMM_glimmerT_24764-T1
Valid prediction for snap_scaffold_10-snap.478-T1
Valid prediction for GlimmerHMM_glimmerT_24755-T1
Valid prediction for GlimmerHMM_glimmerT_24750-T1
Valid prediction for Augustus_model.g16599.t1
Valid prediction for GlimmerHMM_glimmerT_24749-T1
Valid prediction for Augustus_model.g16601.t1
Valid prediction for GeneMark_model.42263_t
Valid prediction for GeneMark_model.42288_t
Valid prediction for snap_scaffold_10-snap.464-T1
Valid prediction for snap_scaffold_10-snap.472-T1
Valid prediction for GeneMark_model.42292_t
Valid prediction for GeneMark_model.42290_t
Valid prediction for Augustus_model.g16602.t1
Valid prediction for GeneMark_model.42280_t
Valid prediction for GlimmerHMM_glimmerT_24744-T1
Valid prediction for Augustus_model.g16592.t1
Valid prediction for snap_scaffold_10-snap.463-T1
Valid prediction for snap_scaffold_10-snap.451-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.42278_t
Valid prediction for GeneMark_model.42289_t
Valid prediction for GlimmerHMM_glimmerT_24751-T1
Valid prediction for snap_scaffold_10-snap.474-T1
Valid prediction for GeneMark_model.42269_t
Valid prediction for GeneMark_model.42268_t
Valid prediction for snap_scaffold_10-snap.450-T1
Valid prediction for GeneMark_model.42271_t
Valid prediction for Augustus_model.g16595.t1
Valid prediction for Augustus_model.g16591.t1
Valid prediction for GlimmerHMM_glimmerT_24765-T1
Valid prediction for snap_scaffold_10-snap.465-T1
Valid prediction for GlimmerHMM_glimmerT_24756-T1
Valid prediction for GeneMark_model.42262_t
Valid prediction for snap_scaffold_10-snap.469-T1
Valid prediction for GeneMark_model.42291_t
Valid prediction for snap_scaffold_10-snap.454-T1
Valid prediction for Augustus_model.g16596.t1
Valid prediction for snap_scaffold_10-snap.468-T1
Valid prediction for GeneMark_model.42282_t
Valid prediction for snap_scaffold_10-snap.448-T1
Valid prediction for GeneMark_model.42277_t
Valid prediction for GlimmerHMM_glimmerT_24745-T1
Valid prediction for GlimmerHMM_glimmerT_24754-T1
Valid prediction for snap_scaffold_10-snap.455-T1
Valid prediction for Augustus_model.g16589.t1
Valid prediction for GlimmerHMM_glimmerT_24760-T1
Valid prediction for GlimmerHMM_glimmerT_24746-T1
Valid prediction for snap_scaffold_10-snap.459-T1
Valid prediction for Augustus_model.g16598.t1
Valid prediction for GeneMark_model.42264_t
Valid prediction for snap_scaffold_10-snap.462-T1
Valid prediction for GeneMark_model.42266_t
Valid prediction for GlimmerHMM_glimmerT_24762-T1
Valid prediction for GeneMark_model.42285_t
Valid prediction for GeneMark_model.42279_t
Valid prediction for snap_scaffold_10-snap.457-T1
Valid prediction for GeneMark_model.42270_t
Valid prediction for GlimmerHMM_glimmerT_24747-T1
Valid prediction for snap_scaffold_10-snap.461-T1
Valid prediction for GlimmerHMM_glimmerT_24752-T1
Valid prediction for snap_scaffold_10-snap.477-T1
Valid prediction for snap_scaffold_10-snap.456-T1
Valid prediction for Augustus_model.g16594.t1
Valid prediction for GeneMark_model.42273_t
Valid prediction for snap_scaffold_10-snap.471-T1
Valid prediction for Augustus_model.g16590.t1
Valid prediction for snap_scaffold_10-snap.452-T1
Valid prediction for GlimmerHMM_glimmerT_24759-T1
Valid prediction for GlimmerHMM_glimmerT_24743-T1
Valid prediction for GlimmerHMM_glimmerT_24757-T1
Valid prediction for GeneMark_model.42258_t
Valid prediction for GeneMark_model.42260_t
Valid prediction for snap_scaffold_10-snap.475-T1
Valid prediction for Augustus_model.g16593.t1
Valid prediction for GeneMark_model.42293_t
Valid prediction for GeneMark_model.42274_t
Valid prediction for GeneMark_model.42287_t
Valid prediction for snap_scaffold_10-snap.449-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12335, rend_intergenic: 9353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27447, rend_intergenic: 21697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53175, rend_intergenic: 48696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88942, rend_intergenic: 84457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91165, rend_intergenic: 89430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102121, rend_intergenic: 94132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119325, rend_intergenic: 106375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128452, rend_intergenic: 127343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133611, rend_intergenic: 128773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 144973
-exon list size: 526


building trellis

0.2    
0.4    
0.6    
0.8    
0.9    
1.1    
1.3    
1.5    
1.7    
1.9    
2.1    
2.3    
2.5    
2.7    
2.8    
3.0    
3.2    
3.4    
3.6    
3.8    
4.0    
4.2    
4.4    
4.5    
4.7    
4.9    
5.1    
5.3    
5.5    
5.7    
5.9    
6.1    
6.2    
6.4    
6.6    
6.8    
7.0    
7.2    
7.4    
7.6    
7.8    
8.0    
8.1    
8.3    
8.5    
8.7    
8.9    
9.1    
9.3    
9.5    
9.7    
9.8    
10.0    
10.2    
10.4    
10.6    
10.8    
11.0    
11.2    
11.4    
11.6    
11.7    
11.9    
12.1    
12.3    
12.5    
12.7    
12.9    
13.1    
13.3    
13.4    
13.6    
13.8    
14.0    
14.2    
14.4    
14.6    
14.8    
15.0    
15.2    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.0    
17.2    
17.4    
17.6    
17.8    
18.0    
18.2    
18.4    
18.6    
18.8    
18.9    
19.1    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.6    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.2    
22.3    
22.5    
22.7    
22.9    
23.1    
23.3    
23.5    
23.7    
23.9    
24.1    
24.2    
24.4    
24.6    
24.8    
25.0    
25.2    
25.4    
25.6    
25.8    
25.9    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.8    
28.0    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.4    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.7    
30.9    
31.1    
31.2    
31.4    
31.6    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.7    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.4    
36.6    
36.7    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.4    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.9    
42.0    
42.2    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
43.9    
44.1    
44.3    
44.5    
44.7    
44.9    
45.1    
45.3    
45.5    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.1    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
50.9    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
55.9    
56.1    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.1    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.6    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.3    
63.4    
63.6    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.3    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.4    
68.6    
68.8    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.2    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
75.9    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.8    
85.0    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.4    
86.6    
86.7    
86.9    
87.1    
87.3    
87.5    
87.7    
87.9    
88.1    
88.3    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.0    
92.2    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
93.9    
94.1    
94.3    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.2    
99.4    
99.6    
99.8    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 12335, rend_intergenic: 9353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27447, rend_intergenic: 21697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53175, rend_intergenic: 48696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88942, rend_intergenic: 84457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91165, rend_intergenic: 89430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102121, rend_intergenic: 94132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119325, rend_intergenic: 106375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128452, rend_intergenic: 127343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133611, rend_intergenic: 128773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support