-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_17220166-17473208

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.46184_t
Valid prediction for CodingQuarry_transcript_5681-T1
Valid prediction for Augustus_model.g17938.t1
Couldn't classify 168610, 168779
Couldn't classify 170028, 170493
Sorry, prediction pasa_asmbl_5045.p1 fails validation.
(CAT)	 CT	168610-168779	GT	AGG
(GGC)	 AG	168865-168989	GT	AGG
(CCA)	 AG	169349-169437	GT	AGG
(GCT)	 AG	169537-169613	GT	AGG
(ACG)	 AG	169769-169894	GT	CTG
(GTC)	 AG	170028-170493	AC	ACA
-recovered pasa_asmbl_5045.p1, internal, 168865, 168989
-recovered pasa_asmbl_5045.p1, internal, 169349, 169437
-recovered pasa_asmbl_5045.p1, internal, 169537, 169613
-recovered pasa_asmbl_5045.p1, internal, 169769, 169894
Valid prediction for snap_scaffold_10-snap.3529-T1
Couldn't classify 173311, 173434
Couldn't classify 175777, 175820
Sorry, prediction pasa_asmbl_5048.p1 fails validation.
(GAG)	 AG	173311-173434	GT	AGG
(AAG)	 AG	173892-173977	GT	AGG
(GAG)	 AG	175019-175064	GT	AAG
(GCT)	 AG	175777-175820	AA	CCA
-recovered pasa_asmbl_5048.p1, internal, 173311, 173434
-recovered pasa_asmbl_5048.p1, internal, 173892, 173977
-recovered pasa_asmbl_5048.p1, internal, 175019, 175064
Valid prediction for snap_scaffold_10-snap.3533-T1
Valid prediction for GeneMark_model.46203_t
Valid prediction for GeneMark_model.46224_t
Valid prediction for snap_scaffold_10-snap.3538-T1
Valid prediction for snap_scaffold_10-snap.3513-T1
Valid prediction for snap_scaffold_10-snap.3542-T1
Valid prediction for GlimmerHMM_glimmerT_26770-T1
Valid prediction for snap_scaffold_10-snap.3531-T1
Valid prediction for GeneMark_model.46207_t
Valid prediction for HiQ_model.g17927.t1
Valid prediction for GlimmerHMM_glimmerT_26743-T1
Valid prediction for snap_scaffold_10-snap.3521-T1
Valid prediction for GeneMark_model.46201_t
Valid prediction for GeneMark_model.46205_t
Valid prediction for Augustus_model.g17934.t1
Valid prediction for GeneMark_model.46180_t
Valid prediction for GeneMark_model.46168_t
Valid prediction for GlimmerHMM_glimmerT_26760-T1
Valid prediction for GlimmerHMM_glimmerT_26752-T1
Valid prediction for GlimmerHMM_glimmerT_26764-T1
Valid prediction for HiQ_model.g17930.t1
Valid prediction for GeneMark_model.46218_t
Valid prediction for snap_scaffold_10-snap.3548-T1
Valid prediction for GeneMark_model.46167_t
Valid prediction for Augustus_model.g17933.t1
Valid prediction for snap_scaffold_10-snap.3549-T1
Valid prediction for snap_scaffold_10-snap.3514-T1
Valid prediction for GeneMark_model.46172_t
Valid prediction for Augustus_model.g17937.t1
Valid prediction for Augustus_model.g17935.t1
Valid prediction for snap_scaffold_10-snap.3515-T1
Valid prediction for snap_scaffold_10-snap.3516-T1
Couldn't classify 49835, 49901
Couldn't classify 53586, 53691
Sorry, prediction pasa_asmbl_5036.p1 fails validation.
(GAT)	 CA	49835-49901	GT	GGG
(AGC)	 AG	52846-53059	GT	AGG
(TCG)	 AG	53586-53691	TA	AGT
-recovered pasa_asmbl_5036.p1, internal, 52846, 53059
Valid prediction for GeneMark_model.46174_t
Valid prediction for snap_scaffold_10-snap.3526-T1
Valid prediction for GeneMark_model.46179_t
Valid prediction for snap_scaffold_10-snap.3523-T1
Valid prediction for snap_scaffold_10-snap.3553-T1
Valid prediction for Augustus_model.g17939.t1
Valid prediction for Augustus_model.g17920.t1
Valid prediction for GlimmerHMM_glimmerT_26765-T1
Valid prediction for GlimmerHMM_glimmerT_26762-T1
Couldn't classify 171295, 172236
Sorry, prediction pasa_asmbl_5144.p1 fails validation.
(CAT)	 GC	171295-172236	GG	CTG
Valid prediction for snap_scaffold_10-snap.3510-T1
Valid prediction for snap_scaffold_10-snap.3536-T1
Valid prediction for GlimmerHMM_glimmerT_26739-T1
Valid prediction for snap_scaffold_10-snap.3519-T1
Valid prediction for GeneMark_model.46166_t
Valid prediction for GeneMark_model.46210_t
Valid prediction for GlimmerHMM_glimmerT_26766-T1
Valid prediction for GeneMark_model.46193_t
Valid prediction for snap_scaffold_10-snap.3540-T1
Valid prediction for GeneMark_model.46170_t
Couldn't classify 126389, 126787
Sorry, prediction pasa_asmbl_5120.p1 fails validation.
(ATG)	 AT	126389-126787	GG	CAG
Valid prediction for pasa_asmbl_5041.p1
Valid prediction for pasa_asmbl_5038.p1
Valid prediction for GlimmerHMM_glimmerT_26748-T1
Couldn't classify 238890, 238999
Sorry, prediction pasa_asmbl_5051.p1 fails validation.
(ATG)	 TC	237128-237809	GT	AGG
(ACC)	 AG	238890-238999	GC	ATG
-recovered pasa_asmbl_5051.p1, initial, 237128, 237809
-recovered pasa_asmbl_5051.p1, internal, 238890, 238999
Valid prediction for GeneMark_model.46223_t
Valid prediction for GlimmerHMM_glimmerT_26763-T1
Valid prediction for GeneMark_model.46214_t
Couldn't classify 170581, 171048
Sorry, prediction pasa_asmbl_5046.p1 fails validation.
(GTG)	 GT	170581-171048	GG	CAG
Couldn't classify 240795, 240896
Couldn't classify 243199, 243952
Sorry, prediction pasa_asmbl_5052.p1 fails validation.
(GTG)	 AG	240795-240896	GT	TGG
(GTG)	 AG	241623-241781	GT	AGG
(GAC)	 AG	242270-242457	GT	GAG
(TTT)	 AG	242550-242643	GT	AGG
(AGG)	 AG	242810-242916	GT	AGG
(GTT)	 AG	243199-243952	GA	GAG
-recovered pasa_asmbl_5052.p1, internal, 240795, 240896
-recovered pasa_asmbl_5052.p1, internal, 241623, 241781
-recovered pasa_asmbl_5052.p1, internal, 242270, 242457
-recovered pasa_asmbl_5052.p1, internal, 242550, 242643
-recovered pasa_asmbl_5052.p1, internal, 242810, 242916
Valid prediction for GlimmerHMM_glimmerT_26744-T1
Valid prediction for snap_scaffold_10-snap.3545-T1
Valid prediction for GlimmerHMM_glimmerT_26755-T1
Valid prediction for GeneMark_model.46222_t
Valid prediction for GeneMark_model.46177_t
Valid prediction for snap_scaffold_10-snap.3508-T1
Valid prediction for GeneMark_model.46220_t
Valid prediction for Augustus_model.g17919.t1
Valid prediction for GeneMark_model.46191_t
Valid prediction for CodingQuarry_transcript_5678-T1
Valid prediction for snap_scaffold_10-snap.3543-T1
Valid prediction for GlimmerHMM_glimmerT_26746-T1
Valid prediction for GeneMark_model.46212_t
Valid prediction for GeneMark_model.46189_t
Valid prediction for GeneMark_model.46196_t
Valid prediction for GeneMark_model.46187_t
Valid prediction for GeneMark_model.46225_t
Valid prediction for GeneMark_model.46216_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_26767-T1
Couldn't classify 128611, 128712
Sorry, prediction GeneMark_model.46186_t fails validation.
(ATG)	 AA	128388-128474	GT	AGG
(CCA)	 AG	128611-128712	GT	CTG
-recovered GeneMark_model.46186_t, initial, 128388, 128474
-recovered GeneMark_model.46186_t, internal, 128611, 128712
Valid prediction for HiQ_model.g17926.t1
Valid prediction for snap_scaffold_10-snap.3550-T1
Valid prediction for HiQ_model.g17932.t1
Valid prediction for snap_scaffold_10-snap.3509-T1
Valid prediction for GeneMark_model.46209_t
Valid prediction for GeneMark_model.46185_t
Valid prediction for GlimmerHMM_glimmerT_26747-T1
Valid prediction for Augustus_model.g17918.t1
Valid prediction for GeneMark_model.46215_t
Valid prediction for GeneMark_model.46202_t
Valid prediction for snap_scaffold_10-snap.3524-T1
Couldn't classify 137233, 137529
Sorry, prediction pasa_asmbl_5040.p1 fails validation.
(ATG)	 TC	137233-137529	AA	AAA
Valid prediction for GlimmerHMM_glimmerT_26761-T1
Valid prediction for GeneMark_model.46198_t
Valid prediction for snap_scaffold_10-snap.3546-T1
Valid prediction for GeneMark_model.46176_t
Couldn't classify 165340, 165480
Sorry, prediction pasa_asmbl_3950.p1 fails validation.
(CAG)	 TG	165340-165480	GT	AGG
(GGA)	 AG	165693-165788	GT	AGG
(GTG)	 AG	165895-166145	GT	AGG
(AGG)	 AG	166460-166577	GT	AGG
(GCG)	 AG	166824-166969	GT	AAG
(GAC)	 AG	167488-167701	GT	AGG
(GTG)	 AG	167829-168017	GT	AAG
(CAA)	 AG	168399-168473	AC	AAA
add_exon() Sorry, pasa_asmbl_3950.p1 165895-166145-terminal-2 is invalid.
-recovered pasa_asmbl_3950.p1, terminal, 165895, 166145
-recovered pasa_asmbl_3950.p1, terminal, 168399, 168473
-recovered pasa_asmbl_3950.p1, internal, 165693, 165788
-recovered pasa_asmbl_3950.p1, internal, 165895, 166145
-recovered pasa_asmbl_3950.p1, internal, 166460, 166577
-recovered pasa_asmbl_3950.p1, internal, 166824, 166969
-recovered pasa_asmbl_3950.p1, internal, 167488, 167701
-recovered pasa_asmbl_3950.p1, internal, 167829, 168017
Valid prediction for snap_scaffold_10-snap.3517-T1
Valid prediction for snap_scaffold_10-snap.3541-T1
Valid prediction for GlimmerHMM_glimmerT_26753-T1
Valid prediction for snap_scaffold_10-snap.3544-T1
Valid prediction for GeneMark_model.46195_t
Valid prediction for snap_scaffold_10-snap.3530-T1
Valid prediction for GlimmerHMM_glimmerT_26769-T1
Valid prediction for CodingQuarry_transcript_5679-T1
Valid prediction for GeneMark_model.46199_t
Valid prediction for HiQ_model.g17921.t1
Valid prediction for snap_scaffold_10-snap.3528-T1
Valid prediction for CodingQuarry_transcript_5674-T1
Couldn't classify 145604, 145652
Sorry, prediction pasa_asmbl_3952.p1 fails validation.
(AGA)	 GC	145604-145652	GT	CGG
(TCG)	 AG	145764-145879	GT	AGG
(CTA)	 AG	146035-146130	GT	TGG
(GGT)	 AG	146307-146439	GT	AGG
(GCG)	 AG	146688-146768	GT	AGG
(CCG)	 AG	147460-147566	CC	AAC
-recovered pasa_asmbl_3952.p1, terminal, 147460, 147566
-recovered pasa_asmbl_3952.p1, internal, 145764, 145879
-recovered pasa_asmbl_3952.p1, internal, 146035, 146130
-recovered pasa_asmbl_3952.p1, internal, 146307, 146439
-recovered pasa_asmbl_3952.p1, internal, 146688, 146768
Valid prediction for snap_scaffold_10-snap.3539-T1
Valid prediction for snap_scaffold_10-snap.3532-T1
Valid prediction for GlimmerHMM_glimmerT_26740-T1
Valid prediction for GeneMark_model.46221_t
Valid prediction for GeneMark_model.46171_t
Valid prediction for pasa_asmbl_3955.p3
Valid prediction for snap_scaffold_10-snap.3507-T1
Valid prediction for CodingQuarry_transcript_5675-T1
Valid prediction for HiQ_model.g17924.t1
Valid prediction for GlimmerHMM_glimmerT_26759-T1
Valid prediction for snap_scaffold_10-snap.3527-T1
Valid prediction for GeneMark_model.46217_t
Couldn't classify 100197, 100221
Sorry, prediction pasa_asmbl_3957.p1 fails validation.
(TTT)	 TG	100197-100221	GT	CAG
(AGA)	 AG	100318-100457	GT	TGG
(AGG)	 AG	101401-101516	GT	AGG
(CGC)	 AG	101693-101798	GT	AGG
(GTT)	 AG	101943-102103	GT	TCG
(TAC)	 AG	103824-103947	GT	AGG
(CCC)	 AG	104216-104374	GT	GGG
(TCT)	 AG	106698-106766	GT	AGG
(GTT)	 AG	106883-107019	GT	AGG
(TAA)	 AG	107108-107231	GT	ATG
(GAT)	 AG	110147-110351	GT	TGG
(AGA)	 AG	110760-110874	GT	GAG
(GTG)	 AG	111702-111834	GT	AGG
(AAG)	 AG	111962-112081	GT	AGG
(GAG)	 AG	112242-112304	GT	AGG
(CCC)	 AG	112410-112543	GT	AGG
(GGA)	 AG	112912-112990	GT	AGG
(GTG)	 AG	113241-113515	GT	AGG
(GTA)	 AG	115734-115737	AG	AAA
-recovered pasa_asmbl_3957.p1, terminal, 115734, 115737
-recovered pasa_asmbl_3957.p1, internal, 100318, 100457
-recovered pasa_asmbl_3957.p1, internal, 101401, 101516
-recovered pasa_asmbl_3957.p1, internal, 101693, 101798
-recovered pasa_asmbl_3957.p1, internal, 101943, 102103
-recovered pasa_asmbl_3957.p1, internal, 103824, 103947
-recovered pasa_asmbl_3957.p1, internal, 104216, 104374
-recovered pasa_asmbl_3957.p1, internal, 106698, 106766
-recovered pasa_asmbl_3957.p1, internal, 106883, 107019
-recovered pasa_asmbl_3957.p1, internal, 107108, 107231
-recovered pasa_asmbl_3957.p1, internal, 110147, 110351
-recovered pasa_asmbl_3957.p1, internal, 110760, 110874
-recovered pasa_asmbl_3957.p1, internal, 111702, 111834
-recovered pasa_asmbl_3957.p1, internal, 111962, 112081
-recovered pasa_asmbl_3957.p1, internal, 112242, 112304
-recovered pasa_asmbl_3957.p1, internal, 112410, 112543
-recovered pasa_asmbl_3957.p1, internal, 112912, 112990
-recovered pasa_asmbl_3957.p1, internal, 113241, 113515
Valid prediction for snap_scaffold_10-snap.3512-T1
Valid prediction for GeneMark_model.46183_t
Valid prediction for GeneMark_model.46173_t
Valid prediction for snap_scaffold_10-snap.3518-T1
Valid prediction for GlimmerHMM_glimmerT_26754-T1
Valid prediction for GlimmerHMM_glimmerT_26745-T1
Valid prediction for CodingQuarry_transcript_5677-T1
Couldn't classify 149641, 149721
Couldn't classify 152321, 152397
Sorry, prediction pasa_asmbl_4081.p1 fails validation.
(CGC)	 CG	149641-149721	GT	TGG
(GAT)	 AG	150089-150232	GT	AGG
(AGA)	 AG	150903-150972	GT	AGG
(ATT)	 AG	152321-152397	GG	CTG
-recovered pasa_asmbl_4081.p1, internal, 150089, 150232
-recovered pasa_asmbl_4081.p1, internal, 150903, 150972
Valid prediction for Augustus_model.g17928.t1
Valid prediction for GlimmerHMM_glimmerT_26758-T1
Valid prediction for Augustus_model.g17917.t1
Valid prediction for HiQ_model.g17923.t1
Valid prediction for GeneMark_model.46169_t
Valid prediction for GeneMark_model.46175_t
Valid prediction for snap_scaffold_10-snap.3547-T1
Valid prediction for GeneMark_model.46188_t
Valid prediction for GeneMark_model.46194_t
Valid prediction for Augustus_model.g17936.t1
Valid prediction for GlimmerHMM_glimmerT_26750-T1
Valid prediction for CodingQuarry_transcript_5680-T1
Valid prediction for GlimmerHMM_glimmerT_26741-T1
Valid prediction for snap_scaffold_10-snap.3520-T1
Valid prediction for Augustus_model.g17929.t1
Valid prediction for Augustus_model.g17922.t1
Valid prediction for snap_scaffold_10-snap.3535-T1
Valid prediction for GlimmerHMM_glimmerT_26756-T1
Valid prediction for GeneMark_model.46178_t
Valid prediction for GlimmerHMM_glimmerT_26751-T1
Valid prediction for GlimmerHMM_glimmerT_26742-T1
Valid prediction for snap_scaffold_10-snap.3511-T1
Valid prediction for GeneMark_model.46192_t
Valid prediction for GeneMark_model.46182_t
Valid prediction for GeneMark_model.46204_t
Valid prediction for snap_scaffold_10-snap.3537-T1
Valid prediction for GeneMark_model.46200_t
Valid prediction for snap_scaffold_10-snap.3522-T1
Valid prediction for GeneMark_model.46181_t
Valid prediction for GeneMark_model.46206_t
Valid prediction for GeneMark_model.46190_t
Valid prediction for GlimmerHMM_glimmerT_26768-T1
Couldn't classify 99120, 99272
Sorry, prediction pasa_asmbl_3960.p1 fails validation.
(ATG)	 AG	92322-92525	GT	AGG
(GAC)	 AG	92984-93070	GT	AGG
(AAC)	 AG	93175-93272	GT	AAG
(TAA)	 AG	93957-94083	GT	AGG
(AAC)	 AG	94919-94999	GT	ATG
(TTC)	 AG	95349-95489	GT	AGG
(AGT)	 AG	96417-96532	GT	AGG
(GTT)	 AG	97482-97576	GT	AGG
(AGT)	 AG	98490-98635	GT	GGG
(TGG)	 AG	99120-99272	TG	AGT
-recovered pasa_asmbl_3960.p1, initial, 92322, 92525
-recovered pasa_asmbl_3960.p1, internal, 92322, 92525
-recovered pasa_asmbl_3960.p1, internal, 92984, 93070
-recovered pasa_asmbl_3960.p1, internal, 93175, 93272
-recovered pasa_asmbl_3960.p1, internal, 93957, 94083
-recovered pasa_asmbl_3960.p1, internal, 94919, 94999
-recovered pasa_asmbl_3960.p1, internal, 95349, 95489
-recovered pasa_asmbl_3960.p1, internal, 96417, 96532
-recovered pasa_asmbl_3960.p1, internal, 97482, 97576
-recovered pasa_asmbl_3960.p1, internal, 98490, 98635
Valid prediction for Augustus_model.g17925.t1
Valid prediction for GlimmerHMM_glimmerT_26749-T1
Valid prediction for GeneMark_model.46211_t
Valid prediction for GeneMark_model.46208_t
Valid prediction for snap_scaffold_10-snap.3552-T1
Valid prediction for snap_scaffold_10-snap.3525-T1
Valid prediction for GeneMark_model.46213_t
Valid prediction for GlimmerHMM_glimmerT_26757-T1
Valid prediction for HiQ_model.g17931.t1
Valid prediction for GeneMark_model.46219_t
Valid prediction for snap_scaffold_10-snap.3534-T1
Valid prediction for snap_scaffold_10-snap.3551-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12722, rend_intergenic: 1803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24076, rend_intergenic: 22608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34657, rend_intergenic: 25115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38905, rend_intergenic: 35562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56103, rend_intergenic: 42988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79586, rend_intergenic: 68930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90949, rend_intergenic: 84571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113514, rend_intergenic: 108734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124656, rend_intergenic: 117558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135450, rend_intergenic: 132957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138459, rend_intergenic: 136622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142865, rend_intergenic: 139525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153744, rend_intergenic: 148713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160204, rend_intergenic: 153769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160795, rend_intergenic: 160571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171558, rend_intergenic: 168104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172509, rend_intergenic: 171661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182167, rend_intergenic: 172893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190973, rend_intergenic: 189377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198288, rend_intergenic: 191776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208679, rend_intergenic: 202761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235343, rend_intergenic: 208893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243681, rend_intergenic: 237128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 253043
-exon list size: 845


building trellis

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5.8    
5.9    
6.0    
6.1    
6.3    
6.4    
6.5    
6.6    
6.7    
6.8    
7.0    
7.1    
7.2    
7.3    
7.4    
7.6    
7.7    
7.8    
7.9    
8.0    
8.1    
8.3    
8.4    
8.5    
8.6    
8.7    
8.9    
9.0    
9.1    
9.2    
9.3    
9.4    
9.6    
9.7    
9.8    
9.9    
10.0    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.9    
11.0    
11.1    
11.2    
11.3    
11.5    
11.6    
11.7    
11.8    
11.9    
12.0    
12.2    
12.3    
12.4    
12.5    
12.6    
12.8    
12.9    
13.0    
13.1    
13.2    
13.3    
13.5    
13.6    
13.7    
13.8    
13.9    
14.0    
14.2    
14.3    
14.4    
14.5    
14.6    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.5    
15.6    
15.7    
15.8    
15.9    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.8    
16.9    
17.0    
17.1    
17.2    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.1    
18.2    
18.3    
18.4    
18.5    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.4    
19.5    
19.6    
19.7    
19.8    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.7    
20.8    
20.9    
21.0    
21.1    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
22.0    
22.1    
22.2    
22.3    
22.4    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
24.0    
24.1    
24.2    
24.3    
24.4    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.3    
25.4    
25.5    
25.6    
25.7    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.6    
26.7    
26.8    
26.9    
27.0    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.9    
28.0    
28.1    
28.2    
28.3    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.2    
29.3    
29.4    
29.5    
29.6    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.5    
30.6    
30.7    
30.8    
30.9    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.5    
32.6    
32.7    
32.8    
32.9    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.8    
33.9    
34.0    
34.1    
34.2    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.1    
35.2    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.4    
36.5    
36.6    
36.7    
36.8    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.7    
37.8    
37.9    
38.0    
38.1    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
39.0    
39.1    
39.2    
39.3    
39.4    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.3    
40.4    
40.5    
40.6    
40.7    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.3    
42.4    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.6    
43.7    
43.8    
43.9    
44.0    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.2    
45.3    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.2    
46.3    
46.4    
46.5    
46.6    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.1    
49.2    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.8    
50.9    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.4    
53.5    
53.6    
53.7    
53.8    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.7    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.2    
62.3    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.3    
73.4    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
75.9    
76.0    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.9    
79.0    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.5    
80.6    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.4    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
90.0    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.6    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 12722, rend_intergenic: 1803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24076, rend_intergenic: 22608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34657, rend_intergenic: 25115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38905, rend_intergenic: 35562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56103, rend_intergenic: 42988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79586, rend_intergenic: 68930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90949, rend_intergenic: 84571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113514, rend_intergenic: 108734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124656, rend_intergenic: 117558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135450, rend_intergenic: 132957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138459, rend_intergenic: 136622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142865, rend_intergenic: 139525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153744, rend_intergenic: 148713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160204, rend_intergenic: 153769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160795, rend_intergenic: 160571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171558, rend_intergenic: 168104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172509, rend_intergenic: 171661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182167, rend_intergenic: 172893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190973, rend_intergenic: 189377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198288, rend_intergenic: 191776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208679, rend_intergenic: 202761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235343, rend_intergenic: 208893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243681, rend_intergenic: 237128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support