-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_16538839-16901003 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_26689-T1 Valid prediction for GeneMark_model.46007_t Couldn't classify 337184, 337277 Sorry, prediction pasa_asmbl_5006.p1 fails validation. (GAG) GT 337184-337277 GT AGG (GGT) AG 339174-339412 CT AAC -recovered pasa_asmbl_5006.p1, terminal, 339174, 339412 Valid prediction for GeneMark_model.46010_t Valid prediction for snap_scaffold_10-snap.3421-T1 Valid prediction for GeneMark_model.45993_t Valid prediction for CodingQuarry_transcript_5663-T1 Couldn't classify 322024, 322103 Sorry, prediction pasa_asmbl_5004.p1 fails validation. (GCC) GG 322024-322103 GT AGG (GAT) AG 323783-323928 GT AAG (AGA) AG 325446-325637 GT GTG (CGA) AG 326002-326087 GT ACG (GGT) AG 326701-326810 GT CCG (GTC) AG 326898-327070 GT GAG (AAA) AG 327264-327388 TC GAT -recovered pasa_asmbl_5004.p1, terminal, 327264, 327388 -recovered pasa_asmbl_5004.p1, internal, 323783, 323928 -recovered pasa_asmbl_5004.p1, internal, 325446, 325637 -recovered pasa_asmbl_5004.p1, internal, 326002, 326087 -recovered pasa_asmbl_5004.p1, internal, 326701, 326810 -recovered pasa_asmbl_5004.p1, internal, 326898, 327070 Valid prediction for pasa_asmbl_5005.p1 Valid prediction for snap_scaffold_10-snap.3433-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_26683-T1 Valid prediction for GlimmerHMM_glimmerT_26687-T1 Valid prediction for snap_scaffold_10-snap.3389-T1 Valid prediction for GeneMark_model.46065_t Valid prediction for GlimmerHMM_glimmerT_26675-T1 Valid prediction for Augustus_model.g17888.t1 Valid prediction for snap_scaffold_10-snap.3397-T1 Valid prediction for snap_scaffold_10-snap.3381-T1 Valid prediction for snap_scaffold_10-snap.3416-T1 Valid prediction for GeneMark_model.45999_t Valid prediction for GeneMark_model.46024_t Valid prediction for GeneMark_model.45971_t Valid prediction for GeneMark_model.46033_t Valid prediction for GeneMark_model.45978_t Valid prediction for Augustus_model.g17881.t1 Valid prediction for GlimmerHMM_glimmerT_26680-T1 Valid prediction for GlimmerHMM_glimmerT_26667-T1 Valid prediction for GeneMark_model.46005_t Valid prediction for GeneMark_model.46004_t Valid prediction for Augustus_model.g17885.t1 Valid prediction for GeneMark_model.46017_t Valid prediction for snap_scaffold_10-snap.3394-T1 Valid prediction for GeneMark_model.46012_t Valid prediction for GlimmerHMM_glimmerT_26688-T1 Valid prediction for GeneMark_model.45982_t Couldn't classify 336765, 336823 Sorry, prediction pasa_asmbl_5097.p1 fails validation. (ATG) TC 333126-333159 GT AGG (CGG) AG 333563-333604 GT AGG (GTC) AG 334093-334135 GT CGG (ACC) AG 334370-334531 GT AGG (ATT) AG 335684-335760 GT AGG (CTG) AG 336765-336823 GA GAG -recovered pasa_asmbl_5097.p1, initial, 333126, 333159 -recovered pasa_asmbl_5097.p1, internal, 333563, 333604 -recovered pasa_asmbl_5097.p1, internal, 334093, 334135 -recovered pasa_asmbl_5097.p1, internal, 334370, 334531 -recovered pasa_asmbl_5097.p1, internal, 335684, 335760 Valid prediction for snap_scaffold_10-snap.3432-T1 Valid prediction for GlimmerHMM_glimmerT_26665-T1 Valid prediction for Augustus_model.g17879.t1 Valid prediction for GeneMark_model.45961_t Valid prediction for CodingQuarry_transcript_5664-T1 Valid prediction for snap_scaffold_10-snap.3391-T1 Valid prediction for GeneMark_model.46025_t Valid prediction for snap_scaffold_10-snap.3409-T1 Valid prediction for GeneMark_model.45994_t Valid prediction for GeneMark_model.46050_t Valid prediction for GlimmerHMM_glimmerT_26670-T1 Valid prediction for snap_scaffold_10-snap.3429-T1 Valid prediction for snap_scaffold_10-snap.3386-T1 Valid prediction for HiQ_model.g17887.t1 Valid prediction for GeneMark_model.46054_t Valid prediction for GlimmerHMM_glimmerT_26674-T1 Valid prediction for GeneMark_model.45966_t Valid prediction for GlimmerHMM_glimmerT_26694-T1 Valid prediction for GeneMark_model.46048_t Couldn't classify 289245, 289316 Sorry, prediction pasa_asmbl_5002.p1 fails validation. (GAA) CA 289245-289316 GT CGG (GAT) AG 289898-289999 GT AGG (ATC) AG 290563-290758 GT AGG (AAA) AG 291520-291602 GA GAG -recovered pasa_asmbl_5002.p1, terminal, 291520, 291602 -recovered pasa_asmbl_5002.p1, internal, 289898, 289999 -recovered pasa_asmbl_5002.p1, internal, 290563, 290758 Valid prediction for GeneMark_model.46051_t Valid prediction for snap_scaffold_10-snap.3412-T1 Valid prediction for GlimmerHMM_glimmerT_26686-T1 Valid prediction for GeneMark_model.46035_t Valid prediction for CodingQuarry_transcript_5662-T1 Valid prediction for GeneMark_model.46068_t Valid prediction for Augustus_model.g17874.t1 Valid prediction for GeneMark_model.46030_t Valid prediction for GeneMark_model.45985_t Valid prediction for GlimmerHMM_glimmerT_26682-T1 Valid prediction for GeneMark_model.46043_t Valid prediction for GeneMark_model.45964_t Valid prediction for GlimmerHMM_glimmerT_26690-T1 Valid prediction for GeneMark_model.46042_t Valid prediction for GeneMark_model.46061_t Valid prediction for snap_scaffold_10-snap.3377-T1 Valid prediction for GeneMark_model.46058_t Valid prediction for snap_scaffold_10-snap.3376-T1 Valid prediction for snap_scaffold_10-snap.3434-T1 Valid prediction for snap_scaffold_10-snap.3404-T1 Valid prediction for GlimmerHMM_glimmerT_26700-T1 Valid prediction for GeneMark_model.45995_t Valid prediction for Augustus_model.g17882.t1 Valid prediction for GlimmerHMM_glimmerT_26685-T1 Couldn't classify 161469, 161519 Sorry, prediction GeneMark_model.46009_t fails validation. (GGG) AG 161469-161519 GT GAG (GAG) AG 161571-161643 AG AGA -recovered GeneMark_model.46009_t, terminal, 161571, 161643 -recovered GeneMark_model.46009_t, internal, 161469, 161519 Valid prediction for GlimmerHMM_glimmerT_26698-T1 Valid prediction for GlimmerHMM_glimmerT_26696-T1 Valid prediction for GeneMark_model.45967_t Valid prediction for GeneMark_model.46056_t Valid prediction for snap_scaffold_10-snap.3438-T1 Valid prediction for snap_scaffold_10-snap.3410-T1 Valid prediction for snap_scaffold_10-snap.3380-T1 Valid prediction for snap_scaffold_10-snap.3406-T1 Valid prediction for GeneMark_model.46040_t Valid prediction for snap_scaffold_10-snap.3401-T1 Valid prediction for snap_scaffold_10-snap.3384-T1 Valid prediction for GeneMark_model.46027_t Valid prediction for Augustus_model.g17871.t1 Valid prediction for GeneMark_model.46002_t Valid prediction for GeneMark_model.46023_t Valid prediction for GeneMark_model.45987_t Valid prediction for CodingQuarry_transcript_5661-T1 Valid prediction for GeneMark_model.45972_t Valid prediction for GlimmerHMM_glimmerT_26684-T1 Valid prediction for GlimmerHMM_glimmerT_26699-T1 Valid prediction for GeneMark_model.46063_t Valid prediction for GeneMark_model.45980_t Valid prediction for GlimmerHMM_glimmerT_26691-T1 Valid prediction for snap_scaffold_10-snap.3399-T1 Valid prediction for Augustus_model.g17878.t1 Valid prediction for GeneMark_model.46019_t Valid prediction for GlimmerHMM_glimmerT_26676-T1 Valid prediction for GlimmerHMM_glimmerT_26669-T1 Valid prediction for snap_scaffold_10-snap.3428-T1 Valid prediction for GeneMark_model.45969_t Valid prediction for GeneMark_model.46021_t Valid prediction for GeneMark_model.46060_t Valid prediction for Augustus_model.g17884.t1 Valid prediction for pasa_asmbl_5001.p1 Valid prediction for snap_scaffold_10-snap.3392-T1 Valid prediction for snap_scaffold_10-snap.3426-T1 Valid prediction for snap_scaffold_10-snap.3420-T1 Valid prediction for GeneMark_model.45975_t Couldn't classify 249761, 249840 Sorry, prediction GeneMark_model.46038_t fails validation. (CTG) AG 249761-249840 GT GAG (GGG) AG 252620-252711 GT GGG (AAA) AG 252917-252995 GT AGG (GAG) AG 253023-253029 GT AGG (GAG) AG 253057-253063 GT AGG (GAG) AG 253129-253172 GT AGG (GAG) AG 253201-253207 GT AGG (GAG) AG 253308-253314 GT AGG (AGA) AG 254119-254127 GT GGG (ACA) AG 254151-254167 GT ATG (GCC) AG 255058-255142 GT AGG (GGG) AG 255236-255316 GC AGG (GCA) AG 255339-255350 GT AGG (TGC) AG 255371-255421 GT GAG (ACA) AG 255444-255554 GT ATG (ACA) AG 255585-255603 CC AGC -recovered GeneMark_model.46038_t, terminal, 255585, 255603 -recovered GeneMark_model.46038_t, internal, 249761, 249840 -recovered GeneMark_model.46038_t, internal, 252620, 252711 -recovered GeneMark_model.46038_t, internal, 252917, 252995 -recovered GeneMark_model.46038_t, internal, 253023, 253029 -recovered GeneMark_model.46038_t, internal, 253057, 253063 -recovered GeneMark_model.46038_t, internal, 253129, 253172 -recovered GeneMark_model.46038_t, internal, 253201, 253207 -recovered GeneMark_model.46038_t, internal, 253308, 253314 -recovered GeneMark_model.46038_t, internal, 254119, 254127 -recovered GeneMark_model.46038_t, internal, 254151, 254167 -recovered GeneMark_model.46038_t, internal, 255058, 255142 -recovered GeneMark_model.46038_t, internal, 255236, 255316 -recovered GeneMark_model.46038_t, internal, 255339, 255350 -recovered GeneMark_model.46038_t, internal, 255371, 255421 -recovered GeneMark_model.46038_t, internal, 255444, 255554 Valid prediction for GeneMark_model.45974_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.3398-T1 Valid prediction for GeneMark_model.46032_t Couldn't classify 265847, 265994 Sorry, prediction GeneMark_model.45996_t fails validation. (AAT) AG 265847-265994 GT GAG (GAG) AG 266033-266145 GT AGG (AGA) AG 266210-266260 GT AAG (GGG) AG 266360-266459 CT GAC add_exon() Sorry, GeneMark_model.45996_t 266033-266145-terminal-2 is invalid. -recovered GeneMark_model.45996_t, terminal, 266033, 266145 -recovered GeneMark_model.45996_t, terminal, 266360, 266459 -recovered GeneMark_model.45996_t, internal, 265847, 265994 -recovered GeneMark_model.45996_t, internal, 266033, 266145 -recovered GeneMark_model.45996_t, internal, 266210, 266260 Valid prediction for Augustus_model.g17883.t1 Valid prediction for GeneMark_model.46044_t Valid prediction for GeneMark_model.45963_t Valid prediction for GeneMark_model.45962_t Valid prediction for GeneMark_model.46029_t Valid prediction for GeneMark_model.46067_t Couldn't classify 32918, 33703 Sorry, prediction pasa_asmbl_3917.p1 fails validation. (CGA) CG 32918-33703 GC GAG Valid prediction for snap_scaffold_10-snap.3417-T1 Couldn't classify 18178, 18339 Sorry, prediction pasa_asmbl_4090.p1 fails validation. (GAG) CA 18178-18339 GT AGG (ATG) AG 18601-18804 GT AGG (GAT) AG 19413-19529 GT AGG (GTG) AG 20187-20258 AG GAA -recovered pasa_asmbl_4090.p1, initial, 18601, 18804 -recovered pasa_asmbl_4090.p1, terminal, 20187, 20258 -recovered pasa_asmbl_4090.p1, internal, 18601, 18804 -recovered pasa_asmbl_4090.p1, internal, 19413, 19529 Valid prediction for GeneMark_model.45977_t Valid prediction for GlimmerHMM_glimmerT_26673-T1 Valid prediction for GlimmerHMM_glimmerT_26672-T1 Valid prediction for snap_scaffold_10-snap.3430-T1 Valid prediction for snap_scaffold_10-snap.3408-T1 Valid prediction for GeneMark_model.46036_t Valid prediction for snap_scaffold_10-snap.3400-T1 Valid prediction for Augustus_model.g17872.t1 Valid prediction for snap_scaffold_10-snap.3419-T1 Valid prediction for GeneMark_model.45990_t Valid prediction for Augustus_model.g17889.t1 Valid prediction for GeneMark_model.46055_t Valid prediction for GeneMark_model.46031_t Valid prediction for GeneMark_model.46006_t Valid prediction for GeneMark_model.45973_t Valid prediction for GeneMark_model.45968_t Valid prediction for snap_scaffold_10-snap.3395-T1 Valid prediction for Augustus_model.g17877.t1 Valid prediction for GlimmerHMM_glimmerT_26695-T1 Valid prediction for GeneMark_model.45988_t Valid prediction for GeneMark_model.45965_t Valid prediction for GeneMark_model.46064_t Valid prediction for GeneMark_model.45992_t Valid prediction for GeneMark_model.45986_t Valid prediction for GlimmerHMM_glimmerT_26666-T1 Valid prediction for snap_scaffold_10-snap.3407-T1 Valid prediction for GeneMark_model.46022_t Valid prediction for GeneMark_model.46066_t Valid prediction for GlimmerHMM_glimmerT_26701-T1 Valid prediction for snap_scaffold_10-snap.3411-T1 Valid prediction for GeneMark_model.45970_t Valid prediction for GeneMark_model.46020_t Valid prediction for GeneMark_model.46015_t Valid prediction for GeneMark_model.46001_t Valid prediction for GeneMark_model.45981_t Valid prediction for GeneMark_model.45979_t Valid prediction for GeneMark_model.46039_t Valid prediction for snap_scaffold_10-snap.3393-T1 Valid prediction for snap_scaffold_10-snap.3424-T1 Valid prediction for snap_scaffold_10-snap.3427-T1 Valid prediction for GeneMark_model.46052_t Couldn't classify 207219, 207385 Sorry, prediction GeneMark_model.46008_t fails validation. (GAA) AG 207219-207385 GT CTG (GTG) AG 207652-207662 GT ATG (CGT) AG 207758-207821 GT AGG (GAT) AG 207869-207906 GT CGG (GGA) AG 207930-207935 GT GAG (GTT) AG 207975-208004 GT AGG (GGC) AG 208026-208037 GT AGG (AGA) AG 208459-208545 GT ATG (AGG) AG 208566-208589 GT AGG (AGA) AG 208618-208692 GT AGG (GGG) AG 208714-208753 TT AAT -recovered GeneMark_model.46008_t, terminal, 208714, 208753 -recovered GeneMark_model.46008_t, internal, 207219, 207385 -recovered GeneMark_model.46008_t, internal, 207652, 207662 -recovered GeneMark_model.46008_t, internal, 207758, 207821 -recovered GeneMark_model.46008_t, internal, 207869, 207906 -recovered GeneMark_model.46008_t, internal, 207930, 207935 -recovered GeneMark_model.46008_t, internal, 207975, 208004 -recovered GeneMark_model.46008_t, internal, 208026, 208037 -recovered GeneMark_model.46008_t, internal, 208459, 208545 -recovered GeneMark_model.46008_t, internal, 208566, 208589 -recovered GeneMark_model.46008_t, internal, 208618, 208692 Couldn't classify 59665, 59891 Couldn't classify 66584, 66722 Sorry, prediction pasa_asmbl_3916.p1 fails validation. (TTG) CG 59665-59891 GT AGG (TGT) AG 60024-60107 GT ATG (CCA) AG 60242-60323 GT TGG (GAG) AG 61365-61469 GT GGG (TTT) AG 62205-62354 GT AGG (GAT) AG 62861-62943 GT GCG (AAC) AG 65321-65479 GT AGG (GTT) AG 65998-66105 GT AGG (GTG) AG 66584-66722 TT TCT -recovered pasa_asmbl_3916.p1, internal, 60024, 60107 -recovered pasa_asmbl_3916.p1, internal, 60242, 60323 -recovered pasa_asmbl_3916.p1, internal, 61365, 61469 -recovered pasa_asmbl_3916.p1, internal, 62205, 62354 -recovered pasa_asmbl_3916.p1, internal, 62861, 62943 -recovered pasa_asmbl_3916.p1, internal, 65321, 65479 -recovered pasa_asmbl_3916.p1, internal, 65998, 66105 Valid prediction for GeneMark_model.46013_t Valid prediction for GlimmerHMM_glimmerT_26702-T1 Valid prediction for GlimmerHMM_glimmerT_26697-T1 Valid prediction for GeneMark_model.46034_t Valid prediction for GeneMark_model.46041_t Valid prediction for GlimmerHMM_glimmerT_26693-T1 Valid prediction for snap_scaffold_10-snap.3383-T1 Valid prediction for GeneMark_model.46018_t Valid prediction for Augustus_model.g17880.t1 Valid prediction for GlimmerHMM_glimmerT_26668-T1 Valid prediction for snap_scaffold_10-snap.3423-T1 Valid prediction for snap_scaffold_10-snap.3388-T1 Valid prediction for snap_scaffold_10-snap.3413-T1 Valid prediction for snap_scaffold_10-snap.3385-T1 Valid prediction for GeneMark_model.46059_t Valid prediction for snap_scaffold_10-snap.3405-T1 Valid prediction for GeneMark_model.46045_t Valid prediction for snap_scaffold_10-snap.3435-T1 Valid prediction for snap_scaffold_10-snap.3378-T1 Valid prediction for GeneMark_model.45959_t Valid prediction for snap_scaffold_10-snap.3431-T1 Valid prediction for snap_scaffold_10-snap.3379-T1 Valid prediction for Augustus_model.g17873.t1 Valid prediction for GeneMark_model.46026_t Valid prediction for GeneMark_model.45976_t Couldn't classify 119083, 119141 Sorry, prediction GeneMark_model.46037_t fails validation. (AGC) AG 119083-119141 GT AGG (GGT) AG 119482-119583 GT GGG (GTA) AG 119605-119608 AG AGA -recovered GeneMark_model.46037_t, terminal, 119605, 119608 -recovered GeneMark_model.46037_t, internal, 119083, 119141 -recovered GeneMark_model.46037_t, internal, 119482, 119583 Valid prediction for GeneMark_model.46047_t Valid prediction for GeneMark_model.46011_t Valid prediction for GlimmerHMM_glimmerT_26671-T1 Valid prediction for snap_scaffold_10-snap.3402-T1 Valid prediction for snap_scaffold_10-snap.3436-T1 Valid prediction for snap_scaffold_10-snap.3382-T1 Valid prediction for snap_scaffold_10-snap.3390-T1 Valid prediction for snap_scaffold_10-snap.3403-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for GeneMark_model.46062_t Valid prediction for snap_scaffold_10-snap.3414-T1 Valid prediction for GeneMark_model.45991_t Valid prediction for GeneMark_model.45998_t Valid prediction for snap_scaffold_10-snap.3396-T1 Valid prediction for snap_scaffold_10-snap.3425-T1 Valid prediction for GlimmerHMM_glimmerT_26681-T1 Valid prediction for GeneMark_model.45984_t Valid prediction for GeneMark_model.46057_t Valid prediction for Augustus_model.g17886.t1 Valid prediction for Augustus_model.g17876.t1 Valid prediction for GlimmerHMM_glimmerT_26678-T1 Valid prediction for GeneMark_model.45960_t Valid prediction for GeneMark_model.46003_t Valid prediction for snap_scaffold_10-snap.3422-T1 Valid prediction for GlimmerHMM_glimmerT_26679-T1 Valid prediction for GeneMark_model.46046_t Valid prediction for GeneMark_model.46049_t Valid prediction for snap_scaffold_10-snap.3415-T1 Valid prediction for GeneMark_model.45983_t Valid prediction for GeneMark_model.46053_t Valid prediction for GeneMark_model.45997_t Valid prediction for GeneMark_model.46000_t Valid prediction for GlimmerHMM_glimmerT_26692-T1 Valid prediction for snap_scaffold_10-snap.3437-T1 Valid prediction for Augustus_model.g17875.t1 Valid prediction for snap_scaffold_10-snap.3387-T1 Valid prediction for snap_scaffold_10-snap.3418-T1 Valid prediction for GlimmerHMM_glimmerT_26677-T1 Valid prediction for GeneMark_model.45989_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12334, rend_intergenic: 6055 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 36541, rend_intergenic: 13178 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56993, rend_intergenic: 50027 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63942, rend_intergenic: 60558 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69425, rend_intergenic: 64617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75238, rend_intergenic: 71596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93326, rend_intergenic: 76975 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96083, rend_intergenic: 93431 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113617, rend_intergenic: 101712 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125463, rend_intergenic: 114411 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134946, rend_intergenic: 126612 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143893, rend_intergenic: 134980 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154437, rend_intergenic: 143968 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167218, rend_intergenic: 154757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178499, rend_intergenic: 168006 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180043, rend_intergenic: 178582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187090, rend_intergenic: 181399 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194513, rend_intergenic: 191999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 205667, rend_intergenic: 198131 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216438, rend_intergenic: 212639 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227677, rend_intergenic: 218723 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 275139, rend_intergenic: 229460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 300805, rend_intergenic: 280460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 309128, rend_intergenic: 305584 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 316336, rend_intergenic: 309870 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 327388, rend_intergenic: 321842 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 356417, rend_intergenic: 341496 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 360471, rend_intergenic: 356464 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 362165 -exon list size: 1552 building trellis 0.1 0.1 0.2 0.3 0.3 0.4 0.5 0.5 0.6 0.6 0.7 0.8 0.8 0.9 1.0 1.0 1.1 1.2 1.2 1.3 1.4 1.4 1.5 1.5 1.6 1.7 1.7 1.8 1.9 1.9 2.0 2.1 2.1 2.2 2.3 2.3 2.4 2.4 2.5 2.6 2.6 2.7 2.8 2.8 2.9 3.0 3.0 3.1 3.2 3.2 3.3 3.3 3.4 3.5 3.5 3.6 3.7 3.7 3.8 3.9 3.9 4.0 4.1 4.1 4.2 4.2 4.3 4.4 4.4 4.5 4.6 4.6 4.7 4.8 4.8 4.9 5.0 5.0 5.1 5.1 5.2 5.3 5.3 5.4 5.5 5.5 5.6 5.7 5.7 5.8 5.9 5.9 6.0 6.0 6.1 6.2 6.2 6.3 6.4 6.4 6.5 6.6 6.6 6.7 6.8 6.8 6.9 6.9 7.0 7.1 7.1 7.2 7.3 7.3 7.4 7.5 7.5 7.6 7.7 7.7 7.8 7.9 7.9 8.0 8.0 8.1 8.2 8.2 8.3 8.4 8.4 8.5 8.6 8.6 8.7 8.8 8.8 8.9 8.9 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.5 9.5 9.6 9.7 9.7 9.8 9.8 9.9 10.0 10.0 10.1 10.2 10.2 10.3 10.4 10.4 10.5 10.6 10.6 10.7 10.7 10.8 10.9 10.9 11.0 11.1 11.1 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.6 11.7 11.8 11.8 11.9 12.0 12.0 12.1 12.2 12.2 12.3 12.4 12.4 12.5 12.5 12.6 12.7 12.7 12.8 12.9 12.9 13.0 13.1 13.1 13.2 13.3 13.3 13.4 13.4 13.5 13.6 13.6 13.7 13.8 13.8 13.9 14.0 14.0 14.1 14.2 14.2 14.3 14.4 14.4 14.5 14.5 14.6 14.7 14.7 14.8 14.9 14.9 15.0 15.1 15.1 15.2 15.3 15.3 15.4 15.4 15.5 15.6 15.6 15.7 15.8 15.8 15.9 16.0 16.0 16.1 16.2 16.2 16.3 16.3 16.4 16.5 16.5 16.6 16.7 16.7 16.8 16.9 16.9 17.0 17.1 17.1 17.2 17.2 17.3 17.4 17.4 17.5 17.6 17.6 17.7 17.8 17.8 17.9 18.0 18.0 18.1 18.1 18.2 18.3 18.3 18.4 18.5 18.5 18.6 18.7 18.7 18.8 18.9 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.4 19.4 19.5 19.6 19.6 19.7 19.8 19.8 19.9 19.9 20.0 20.1 20.1 20.2 20.3 20.3 20.4 20.5 20.5 20.6 20.7 20.7 20.8 20.8 20.9 21.0 21.0 21.1 21.2 21.2 21.3 21.4 21.4 21.5 21.6 21.6 21.7 21.8 21.8 21.9 21.9 22.0 22.1 22.1 22.2 22.3 22.3 22.4 22.5 22.5 22.6 22.7 22.7 22.8 22.8 22.9 23.0 23.0 23.1 23.2 23.2 23.3 23.4 23.4 23.5 23.6 23.6 23.7 23.7 23.8 23.9 23.9 24.0 24.1 24.1 24.2 24.3 24.3 24.4 24.5 24.5 24.6 24.6 24.7 24.8 24.8 24.9 25.0 25.0 25.1 25.2 25.2 25.3 25.4 25.4 25.5 25.5 25.6 25.7 25.7 25.8 25.9 25.9 26.0 26.1 26.1 26.2 26.3 26.3 26.4 26.4 26.5 26.6 26.6 26.7 26.8 26.8 26.9 27.0 27.0 27.1 27.2 27.2 27.3 27.3 27.4 27.5 27.5 27.6 27.7 27.7 27.8 27.9 27.9 28.0 28.1 28.1 28.2 28.2 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.8 28.8 28.9 29.0 29.0 29.1 29.2 29.2 29.3 29.3 29.4 29.5 29.5 29.6 29.7 29.7 29.8 29.9 29.9 30.0 30.1 30.1 30.2 30.2 30.3 30.4 30.4 30.5 30.6 30.6 30.7 30.8 30.8 30.9 31.0 31.0 31.1 31.1 31.2 31.3 31.3 31.4 31.5 31.5 31.6 31.7 31.7 31.8 31.9 31.9 32.0 32.0 32.1 32.2 32.2 32.3 32.4 32.4 32.5 32.6 32.6 32.7 32.8 32.8 32.9 32.9 33.0 33.1 33.1 33.2 33.3 33.3 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.8 33.9 34.0 34.0 34.1 34.2 34.2 34.3 34.4 34.4 34.5 34.6 34.6 34.7 34.7 34.8 34.9 34.9 35.0 35.1 35.1 35.2 35.3 35.3 35.4 35.5 35.5 35.6 35.6 35.7 35.8 35.8 35.9 36.0 36.0 36.1 36.2 36.2 36.3 36.4 36.4 36.5 36.6 36.6 36.7 36.7 36.8 36.9 36.9 37.0 37.1 37.1 37.2 37.3 37.3 37.4 37.5 37.5 37.6 37.6 37.7 37.8 37.8 37.9 38.0 38.0 38.1 38.2 38.2 38.3 38.4 38.4 38.5 38.5 38.6 38.7 38.7 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.3 39.3 39.4 39.4 39.5 39.6 39.6 39.7 39.8 39.8 39.9 40.0 40.0 40.1 40.2 40.2 40.3 40.3 40.4 40.5 40.5 40.6 40.7 40.7 40.8 40.9 40.9 41.0 41.1 41.1 41.2 41.2 41.3 41.4 41.4 41.5 41.6 41.6 41.7 41.8 41.8 41.9 42.0 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.5 42.5 42.6 42.7 42.7 42.8 42.9 42.9 43.0 43.1 43.1 43.2 43.2 43.3 43.4 43.4 43.5 43.6 43.6 43.7 43.8 43.8 43.9 44.0 44.0 44.1 44.1 44.2 44.3 44.3 44.4 44.5 44.5 44.6 44.7 44.7 44.8 44.9 44.9 45.0 45.0 45.1 45.2 45.2 45.3 45.4 45.4 45.5 45.6 45.6 45.7 45.8 45.8 45.9 45.9 46.0 46.1 46.1 46.2 46.3 46.3 46.4 46.5 46.5 46.6 46.7 46.7 46.8 46.8 46.9 47.0 47.0 47.1 47.2 47.2 47.3 47.4 47.4 47.5 47.6 47.6 47.7 47.7 47.8 47.9 47.9 48.0 48.1 48.1 48.2 48.3 48.3 48.4 48.5 48.5 48.6 48.6 48.7 48.8 48.8 48.9 49.0 49.0 49.1 49.2 49.2 49.3 49.4 49.4 49.5 49.5 49.6 49.7 49.7 49.8 49.9 49.9 50.0 50.1 50.1 50.2 50.3 50.3 50.4 50.5 50.5 50.6 50.6 50.7 50.8 50.8 50.9 51.0 51.0 51.1 51.2 51.2 51.3 51.4 51.4 51.5 51.5 51.6 51.7 51.7 51.8 51.9 51.9 52.0 52.1 52.1 52.2 52.3 52.3 52.4 52.4 52.5 52.6 52.6 52.7 52.8 52.8 52.9 53.0 53.0 53.1 53.2 53.2 53.3 53.3 53.4 53.5 53.5 53.6 53.7 53.7 53.8 53.9 53.9 54.0 54.1 54.1 54.2 54.2 54.3 54.4 54.4 54.5 54.6 54.6 54.7 54.8 54.8 54.9 55.0 55.0 55.1 55.1 55.2 55.3 55.3 55.4 55.5 55.5 55.6 55.7 55.7 55.8 55.9 55.9 56.0 56.0 56.1 56.2 56.2 56.3 56.4 56.4 56.5 56.6 56.6 56.7 56.8 56.8 56.9 56.9 57.0 57.1 57.1 57.2 57.3 57.3 57.4 57.5 57.5 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.0 58.1 58.2 58.2 58.3 58.4 58.4 58.5 58.6 58.6 58.7 58.8 58.8 58.9 58.9 59.0 59.1 59.1 59.2 59.3 59.3 59.4 59.5 59.5 59.6 59.7 59.7 59.8 59.8 59.9 60.0 60.0 60.1 60.2 60.2 60.3 60.4 60.4 60.5 60.6 60.6 60.7 60.7 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.3 61.3 61.4 61.5 61.5 61.6 61.6 61.7 61.8 61.8 61.9 62.0 62.0 62.1 62.2 62.2 62.3 62.4 62.4 62.5 62.5 62.6 62.7 62.7 62.8 62.9 62.9 63.0 63.1 63.1 63.2 63.3 63.3 63.4 63.4 63.5 63.6 63.6 63.7 63.8 63.8 63.9 64.0 64.0 64.1 64.2 64.2 64.3 64.4 64.4 64.5 64.5 64.6 64.7 64.7 64.8 64.9 64.9 65.0 65.1 65.1 65.2 65.3 65.3 65.4 65.4 65.5 65.6 65.6 65.7 65.8 65.8 65.9 66.0 66.0 66.1 66.2 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.7 66.7 66.8 66.9 66.9 67.0 67.1 67.1 67.2 67.2 67.3 67.4 67.4 67.5 67.6 67.6 67.7 67.8 67.8 67.9 68.0 68.0 68.1 68.1 68.2 68.3 68.3 68.4 68.5 68.5 68.6 68.7 68.7 68.8 68.9 68.9 69.0 69.0 69.1 69.2 69.2 69.3 69.4 69.4 69.5 69.6 69.6 69.7 69.8 69.8 69.9 69.9 70.0 70.1 70.1 70.2 70.3 70.3 70.4 70.5 70.5 70.6 70.7 70.7 70.8 70.8 70.9 71.0 71.0 71.1 71.2 71.2 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.8 71.8 71.9 71.9 72.0 72.1 72.1 72.2 72.3 72.3 72.4 72.5 72.5 72.6 72.7 72.7 72.8 72.8 72.9 73.0 73.0 73.1 73.2 73.2 73.3 73.4 73.4 73.5 73.6 73.6 73.7 73.7 73.8 73.9 73.9 74.0 74.1 74.1 74.2 74.3 74.3 74.4 74.5 74.5 74.6 74.6 74.7 74.8 74.8 74.9 75.0 75.0 75.1 75.2 75.2 75.3 75.4 75.4 75.5 75.5 75.6 75.7 75.7 75.8 75.9 75.9 76.0 76.1 76.1 76.2 76.3 76.3 76.4 76.4 76.5 76.6 76.6 76.7 76.8 76.8 76.9 77.0 77.0 77.1 77.2 77.2 77.3 77.3 77.4 77.5 77.5 77.6 77.7 77.7 77.8 77.9 77.9 78.0 78.1 78.1 78.2 78.2 78.3 78.4 78.4 78.5 78.6 78.6 78.7 78.8 78.8 78.9 79.0 79.0 79.1 79.2 79.2 79.3 79.3 79.4 79.5 79.5 79.6 79.7 79.7 79.8 79.9 79.9 80.0 80.1 80.1 80.2 80.2 80.3 80.4 80.4 80.5 80.6 80.6 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.1 81.2 81.3 81.3 81.4 81.5 81.5 81.6 81.7 81.7 81.8 81.9 81.9 82.0 82.0 82.1 82.2 82.2 82.3 82.4 82.4 82.5 82.6 82.6 82.7 82.8 82.8 82.9 82.9 83.0 83.1 83.1 83.2 83.3 83.3 83.4 83.5 83.5 83.6 83.7 83.7 83.8 83.8 83.9 84.0 84.0 84.1 84.2 84.2 84.3 84.4 84.4 84.5 84.6 84.6 84.7 84.7 84.8 84.9 84.9 85.0 85.1 85.1 85.2 85.3 85.3 85.4 85.5 85.5 85.6 85.6 85.7 85.8 85.8 85.9 86.0 86.0 86.1 86.2 86.2 86.3 86.4 86.4 86.5 86.6 86.6 86.7 86.7 86.8 86.9 86.9 87.0 87.1 87.1 87.2 87.3 87.3 87.4 87.5 87.5 87.6 87.6 87.7 87.8 87.8 87.9 88.0 88.0 88.1 88.2 88.2 88.3 88.4 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.9 88.9 89.0 89.1 89.1 89.2 89.3 89.3 89.4 89.4 89.5 89.6 89.6 89.7 89.8 89.8 89.9 90.0 90.0 90.1 90.2 90.2 90.3 90.3 90.4 90.5 90.5 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.1 91.1 91.2 91.2 91.3 91.4 91.4 91.5 91.6 91.6 91.7 91.8 91.8 91.9 92.0 92.0 92.1 92.1 92.2 92.3 92.3 92.4 92.5 92.5 92.6 92.7 92.7 92.8 92.9 92.9 93.0 93.1 93.1 93.2 93.2 93.3 93.4 93.4 93.5 93.6 93.6 93.7 93.8 93.8 93.9 94.0 94.0 94.1 94.1 94.2 94.3 94.3 94.4 94.5 94.5 94.6 94.7 94.7 94.8 94.9 94.9 95.0 95.0 95.1 95.2 95.2 95.3 95.4 95.4 95.5 95.6 95.6 95.7 95.8 95.8 95.9 95.9 96.0 96.1 96.1 96.2 96.3 96.3 96.4 96.5 96.5 96.6 96.7 96.7 96.8 96.8 96.9 97.0 97.0 97.1 97.2 97.2 97.3 97.4 97.4 97.5 97.6 97.6 97.7 97.7 97.8 97.9 97.9 98.0 98.1 98.1 98.2 98.3 98.3 98.4 98.5 98.5 98.6 98.6 98.7 98.8 98.8 98.9 99.0 99.0 99.1 99.2 99.2 99.3 99.4 99.4 99.5 99.5 99.6 99.7 99.7 99.8 99.9 99.9 -found 76 predictions from path traversal Error with prediction: snap lend_intergenic: 12334, rend_intergenic: 6055 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 36541, rend_intergenic: 13178 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56993, rend_intergenic: 50027 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63942, rend_intergenic: 60558 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69425, rend_intergenic: 64617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75238, rend_intergenic: 71596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93326, rend_intergenic: 76975 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96083, rend_intergenic: 93431 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113617, rend_intergenic: 101712 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125463, rend_intergenic: 114411 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134946, rend_intergenic: 126612 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143893, rend_intergenic: 134980 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154437, rend_intergenic: 143968 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167218, rend_intergenic: 154757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178499, rend_intergenic: 168006 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180043, rend_intergenic: 178582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187090, rend_intergenic: 181399 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194513, rend_intergenic: 191999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 205667, rend_intergenic: 198131 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216438, rend_intergenic: 212639 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227677, rend_intergenic: 218723 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 275139, rend_intergenic: 229460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 300805, rend_intergenic: 280460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 309128, rend_intergenic: 305584 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 316336, rend_intergenic: 309870 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 327388, rend_intergenic: 321842 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 356417, rend_intergenic: 341496 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 360471, rend_intergenic: 356464 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 21 predictions persist after filtering for low support