-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_13325472-13449656

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g17593.t1
Valid prediction for Augustus_model.g17601.t1
Valid prediction for GeneMark_model.44983_t
Valid prediction for Augustus_model.g17591.t1
Valid prediction for snap_scaffold_10-snap.2649-T1
Valid prediction for GlimmerHMM_glimmerT_26213-T1
Valid prediction for snap_scaffold_10-snap.2647-T1
Valid prediction for GlimmerHMM_glimmerT_26224-T1
Valid prediction for snap_scaffold_10-snap.2650-T1
Valid prediction for GlimmerHMM_glimmerT_26222-T1
Valid prediction for GeneMark_model.44969_t
Valid prediction for snap_scaffold_10-snap.2654-T1
Valid prediction for Augustus_model.g17596.t1
Valid prediction for Augustus_model.g17594.t1
Valid prediction for GeneMark_model.44961_t
Valid prediction for snap_scaffold_10-snap.2660-T1
Valid prediction for snap_scaffold_10-snap.2668-T1
Valid prediction for GeneMark_model.44957_t
Valid prediction for GeneMark_model.44979_t
Valid prediction for GlimmerHMM_glimmerT_26216-T1
Valid prediction for snap_scaffold_10-snap.2659-T1
Valid prediction for snap_scaffold_10-snap.2662-T1
Valid prediction for Augustus_model.g17600.t1
Valid prediction for GeneMark_model.44971_t
Valid prediction for GeneMark_model.44966_t
Valid prediction for GlimmerHMM_glimmerT_26226-T1
Valid prediction for snap_scaffold_10-snap.2665-T1
Valid prediction for GeneMark_model.44959_t
Valid prediction for snap_scaffold_10-snap.2667-T1
Valid prediction for snap_scaffold_10-snap.2653-T1
Valid prediction for snap_scaffold_10-snap.2664-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g17599.t1
Valid prediction for snap_scaffold_10-snap.2669-T1
Valid prediction for snap_scaffold_10-snap.2652-T1
Valid prediction for GeneMark_model.44977_t
Valid prediction for snap_scaffold_10-snap.2646-T1
Valid prediction for GlimmerHMM_glimmerT_26223-T1
Couldn't classify 91960, 92070
Sorry, prediction pasa_asmbl_4867.p1 fails validation.
(CTC)	 CG	91960-92070	GT	AGG
(GAC)	 AG	93978-94040	GT	AGG
(GTC)	 AG	94502-94703	GT	CAG
(TGG)	 AG	94992-95035	AC	AAA
-recovered pasa_asmbl_4867.p1, terminal, 94992, 95035
-recovered pasa_asmbl_4867.p1, internal, 93978, 94040
-recovered pasa_asmbl_4867.p1, internal, 94502, 94703
Valid prediction for GeneMark_model.44973_t
Valid prediction for Augustus_model.g17603.t1
Valid prediction for GeneMark_model.44981_t
Valid prediction for GlimmerHMM_glimmerT_26225-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.44974_t
Valid prediction for GlimmerHMM_glimmerT_26217-T1
Valid prediction for GlimmerHMM_glimmerT_26221-T1
Valid prediction for GeneMark_model.44975_t
Valid prediction for Augustus_model.g17598.t1
Valid prediction for GeneMark_model.44985_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g17602.t1
Valid prediction for GeneMark_model.44968_t
Valid prediction for snap_scaffold_10-snap.2661-T1
Valid prediction for GeneMark_model.44967_t
Valid prediction for snap_scaffold_10-snap.2648-T1
Valid prediction for snap_scaffold_10-snap.2666-T1
Valid prediction for GeneMark_model.44982_t
Couldn't classify 33142, 33534
Sorry, prediction pasa_asmbl_4866.p1 fails validation.
(GTC)	 CA	33142-33534	AC	GAA
Valid prediction for GeneMark_model.44972_t
Valid prediction for snap_scaffold_10-snap.2663-T1
Valid prediction for snap_scaffold_10-snap.2645-T1
Valid prediction for snap_scaffold_10-snap.2658-T1
Valid prediction for GeneMark_model.44956_t
Valid prediction for snap_scaffold_10-snap.2657-T1
Valid prediction for GeneMark_model.44970_t
Valid prediction for snap_scaffold_10-snap.2672-T1
Valid prediction for GlimmerHMM_glimmerT_26212-T1
Couldn't classify 18124, 18151
Sorry, prediction pasa_asmbl_3782.p1 fails validation.
(CTG)	 AG	18124-18151	GT	AGG
(GTC)	 AG	19920-20138	GT	AGG
(TGT)	 AG	22513-22694	TG	AGT
-recovered pasa_asmbl_3782.p1, terminal, 22513, 22694
-recovered pasa_asmbl_3782.p1, internal, 18124, 18151
-recovered pasa_asmbl_3782.p1, internal, 19920, 20138
Valid prediction for GeneMark_model.44958_t
Valid prediction for GlimmerHMM_glimmerT_26218-T1
Valid prediction for Augustus_model.g17595.t1
Valid prediction for snap_scaffold_10-snap.2671-T1
Valid prediction for GeneMark_model.44984_t
Valid prediction for GeneMark_model.44980_t
Valid prediction for GeneMark_model.44978_t
Valid prediction for snap_scaffold_10-snap.2655-T1
Valid prediction for GeneMark_model.44976_t
Valid prediction for Augustus_model.g17604.t1
Valid prediction for snap_scaffold_10-snap.2670-T1
Couldn't classify 16123, 16398
Couldn't classify 16715, 16888
Sorry, prediction pasa_asmbl_3783.p1 fails validation.
(CTG)	 CA	16123-16398	GT	AGG
(AAA)	 AG	16715-16888	GA	AGG
Valid prediction for GlimmerHMM_glimmerT_26220-T1
Valid prediction for Augustus_model.g17605.t1
Valid prediction for GeneMark_model.44964_t
Valid prediction for GlimmerHMM_glimmerT_26227-T1
Valid prediction for GeneMark_model.44986_t
Valid prediction for GlimmerHMM_glimmerT_26214-T1
Valid prediction for GlimmerHMM_glimmerT_26228-T1
Valid prediction for GeneMark_model.44965_t
Valid prediction for snap_scaffold_10-snap.2651-T1
Valid prediction for GeneMark_model.44963_t
Valid prediction for snap_scaffold_10-snap.2656-T1
Valid prediction for GlimmerHMM_glimmerT_26215-T1
Valid prediction for GlimmerHMM_glimmerT_26219-T1
Valid prediction for Augustus_model.g17597.t1
Valid prediction for Augustus_model.g17590.t1
Valid prediction for GeneMark_model.44960_t
Valid prediction for GeneMark_model.44955_t
Valid prediction for Augustus_model.g17592.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11178, rend_intergenic: 6606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64001, rend_intergenic: 59635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72142, rend_intergenic: 67446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77814, rend_intergenic: 77050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95594, rend_intergenic: 89608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113569, rend_intergenic: 101619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 124185
-exon list size: 483


building trellis

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25.8    
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29.9    
30.1    
30.3    
30.5    
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30.9    
31.1    
31.3    
31.5    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.2    
34.4    
34.6    
34.8    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.4    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
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42.9    
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43.9    
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44.3    
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44.9    
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45.6    
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46.0    
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47.6    
47.8    
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48.2    
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48.9    
49.1    
49.3    
49.5    
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49.9    
50.1    
50.3    
50.5    
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50.9    
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51.3    
51.5    
51.8    
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52.4    
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58.1    
58.4    
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58.8    
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60.0    
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63.9    
64.1    
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66.0    
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76.9    
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77.3    
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78.4    
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80.4    
80.6    
80.8    
81.0    
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81.4    
81.6    
81.9    
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82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.9    
90.1    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.5    
91.8    
92.0    
92.2    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 11178, rend_intergenic: 6606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64001, rend_intergenic: 59635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72142, rend_intergenic: 67446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77814, rend_intergenic: 77050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95594, rend_intergenic: 89608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113569, rend_intergenic: 101619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support