-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_1141255-1378241 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.274-T1 Valid prediction for snap_scaffold_10-snap.275-T1 Valid prediction for GlimmerHMM_glimmerT_24637-T1 Valid prediction for GeneMark_model.41987_t Valid prediction for GeneMark_model.41996_t Valid prediction for Augustus_model.g16519.t1 Valid prediction for Augustus_model.g16514.t1 Couldn't classify 26860, 26901 Sorry, prediction pasa_asmbl_4197.p2 fails validation. (CTG) CT 26860-26901 GT TTG (CTT) AG 29272-29286 GT TGG (GGC) AG 31556-31665 GT AGG (GGA) AG 32015-32147 GT AGG (AGT) AG 32301-32428 GT AGG (CCC) AG 32552-32697 GT AGG (GTC) AG 32927-33085 GT AGG (ATT) AG 35011-35018 AA AAA -recovered pasa_asmbl_4197.p2, terminal, 35011, 35018 -recovered pasa_asmbl_4197.p2, internal, 29272, 29286 -recovered pasa_asmbl_4197.p2, internal, 31556, 31665 -recovered pasa_asmbl_4197.p2, internal, 32015, 32147 -recovered pasa_asmbl_4197.p2, internal, 32301, 32428 -recovered pasa_asmbl_4197.p2, internal, 32552, 32697 -recovered pasa_asmbl_4197.p2, internal, 32927, 33085 Valid prediction for GlimmerHMM_glimmerT_24625-T1 Valid prediction for GeneMark_model.42010_t Valid prediction for GeneMark_model.41985_t Valid prediction for GeneMark_model.42014_t Valid prediction for GeneMark_model.42029_t Valid prediction for Augustus_model.g16512.t1 Valid prediction for GeneMark_model.42018_t Valid prediction for Augustus_model.g16522.t1 Valid prediction for Augustus_model.g16520.t1 Valid prediction for GeneMark_model.42025_t Valid prediction for GeneMark_model.42006_t Valid prediction for snap_scaffold_10-snap.264-T1 Valid prediction for snap_scaffold_10-snap.284-T1 Valid prediction for GlimmerHMM_glimmerT_24621-T1 Valid prediction for Augustus_model.g16521.t1 Valid prediction for snap_scaffold_10-snap.271-T1 Valid prediction for snap_scaffold_10-snap.294-T1 Valid prediction for Augustus_model.g16517.t1 Valid prediction for GeneMark_model.42022_t Valid prediction for snap_scaffold_10-snap.289-T1 Valid prediction for GeneMark_model.42041_t Valid prediction for GlimmerHMM_glimmerT_24615-T1 Valid prediction for snap_scaffold_10-snap.287-T1 Valid prediction for snap_scaffold_10-snap.293-T1 Valid prediction for GlimmerHMM_glimmerT_24620-T1 Valid prediction for GlimmerHMM_glimmerT_24616-T1 Valid prediction for pasa_asmbl_4204.p2 Valid prediction for GeneMark_model.41984_t Valid prediction for GeneMark_model.42008_t Valid prediction for GeneMark_model.41989_t Valid prediction for GlimmerHMM_glimmerT_24623-T1 Valid prediction for CodingQuarry_transcript_5273-T1 Valid prediction for Augustus_model.g16523.t1 Valid prediction for Augustus_model.g16515.t1 Valid prediction for snap_scaffold_10-snap.281-T1 Valid prediction for snap_scaffold_10-snap.292-T1 Valid prediction for GeneMark_model.41982_t Valid prediction for CodingQuarry_transcript_5272-T1 Valid prediction for GeneMark_model.42004_t Valid prediction for snap_scaffold_10-snap.255-T1 Valid prediction for snap_scaffold_10-snap.285-T1 Valid prediction for GlimmerHMM_glimmerT_24635-T1 Couldn't classify 102013, 102227 Couldn't classify 103555, 103720 Sorry, prediction pasa_asmbl_4203.p1 fails validation. (GCT) CA 102013-102227 GT AAG (GTG) AG 103555-103720 GG TAG Valid prediction for GeneMark_model.42013_t Valid prediction for GlimmerHMM_glimmerT_24634-T1 Valid prediction for GeneMark_model.42007_t Valid prediction for GlimmerHMM_glimmerT_24630-T1 Couldn't classify 20046, 20174 Couldn't classify 23938, 23970 Sorry, prediction pasa_asmbl_4192.p1 fails validation. (GCG) AG 20046-20174 GT AGG (AGG) AG 20370-20516 GT GTG (GAC) AG 21755-21949 GT AGG (CTT) AG 23938-23970 CC CCC -recovered pasa_asmbl_4192.p1, internal, 20046, 20174 -recovered pasa_asmbl_4192.p1, internal, 20370, 20516 -recovered pasa_asmbl_4192.p1, internal, 21755, 21949 Valid prediction for snap_scaffold_10-snap.261-T1 Valid prediction for GeneMark_model.42039_t Valid prediction for snap_scaffold_10-snap.256-T1 Valid prediction for snap_scaffold_10-snap.297-T1 Valid prediction for Augustus_model.g16511.t1 Valid prediction for GeneMark_model.42024_t Valid prediction for GlimmerHMM_glimmerT_24627-T1 Valid prediction for snap_scaffold_10-snap.267-T1 Couldn't classify 114605, 114736 Sorry, prediction pasa_asmbl_4205.p1 fails validation. (GGA) AG 114605-114736 GT ACG (AAA) AG 116482-116586 GT AGG (GTT) AG 116866-117459 GT TGG (GTT) AG 117700-118182 GT AGG (GTC) AG 118363-118419 GT CTG (GGC) AG 120586-120627 GT CAG (GGT) AG 121088-121150 GT GGG (GGC) AG 121430-121504 GT CTG (TTC) AG 123645-123737 GT GGG (TTG) AG 123897-123953 GT TGG (GGT) AG 124133-124186 GT AGG (GGA) AG 124292-124345 GT GGG (GGA) AG 124672-124725 GT AGG (GGA) AG 124877-124930 GT GAG (GGT) AG 125113-125166 GT GAG (GGC) AG 125971-126015 GT CTG (GGA) AG 126691-126744 GT CTG (GGT) AG 127261-127305 GT TTG (GGA) AG 127784-127837 GT AGG (GGT) AG 128166-128210 GT AGG (GGT) AG 128383-128436 GT CGG (GGT) AG 129441-129485 GT TGG (GGC) AG 129898-129951 GT AGG (GGA) AG 131059-131103 GT AGG (GGA) AG 131586-131639 GT GAG (GGT) AG 133427-133534 GT AGG (GGC) AG 134042-134095 GT AGG (GGA) AG 134535-134588 GT GGG (GGC) AG 135729-135773 GT CGG (GGG) AG 135923-135976 GT AGG (GGG) AG 136121-136165 GT GGG (GGT) AG 136274-136327 GT CTG (GGC) AG 136483-136536 GT CTG (GGT) AG 136633-136686 GT AGG (GGA) AG 138597-138704 GT AGG (GGT) AG 138935-139024 GT TGG (GGG) AG 139764-139817 GT CTG (GGT) AG 140102-140209 GT CGG (GGA) AG 140501-140608 GT AGG (GGA) AG 141797-141850 GT ATG (GGT) AG 142227-142280 GT CTG (GGT) AG 142438-142545 GT AGG (GGC) AG 142656-142709 GT TGG (GGC) AG 143055-143162 GT AGG (GGT) AG 144923-144976 GT CAG (GGT) AG 145125-145232 GT CCG (GGT) AG 145585-145638 GT CTG (GGT) AG 145750-145803 GT CTG (GGT) AG 146017-146070 GT GAG (GGA) AG 146220-146273 GT AGG (GGA) AG 146541-146648 GT TGG (GGA) AG 146808-146861 GT TGG (GGT) AG 147107-147160 GT AGG (GGT) AG 147586-147693 GT ACG (GGT) AG 147838-147891 GT CGG (GGC) AG 148012-148047 GT CGG (GGT) AG 148136-148189 GT CAG (GGC) AG 148302-148566 GT TGG (GTG) AG 148909-149021 GT GGG (GCT) AG 150841-150909 GT TGG (CTG) AG 153787-154020 GT CGG (TTG) AG 154283-154429 GA AAG -recovered pasa_asmbl_4205.p1, terminal, 154283, 154429 -recovered pasa_asmbl_4205.p1, internal, 114605, 114736 -recovered pasa_asmbl_4205.p1, internal, 116482, 116586 -recovered pasa_asmbl_4205.p1, internal, 116866, 117459 -recovered pasa_asmbl_4205.p1, internal, 117700, 118182 -recovered pasa_asmbl_4205.p1, internal, 118363, 118419 -recovered pasa_asmbl_4205.p1, internal, 120586, 120627 -recovered pasa_asmbl_4205.p1, internal, 121088, 121150 -recovered pasa_asmbl_4205.p1, internal, 121430, 121504 -recovered pasa_asmbl_4205.p1, internal, 123645, 123737 -recovered pasa_asmbl_4205.p1, internal, 123897, 123953 -recovered pasa_asmbl_4205.p1, internal, 124133, 124186 -recovered pasa_asmbl_4205.p1, internal, 124292, 124345 -recovered pasa_asmbl_4205.p1, internal, 124672, 124725 -recovered pasa_asmbl_4205.p1, internal, 124877, 124930 -recovered pasa_asmbl_4205.p1, internal, 125113, 125166 -recovered pasa_asmbl_4205.p1, internal, 125971, 126015 -recovered pasa_asmbl_4205.p1, internal, 126691, 126744 -recovered pasa_asmbl_4205.p1, internal, 127261, 127305 -recovered pasa_asmbl_4205.p1, internal, 127784, 127837 -recovered pasa_asmbl_4205.p1, internal, 128166, 128210 -recovered pasa_asmbl_4205.p1, internal, 128383, 128436 -recovered pasa_asmbl_4205.p1, internal, 129441, 129485 -recovered pasa_asmbl_4205.p1, internal, 129898, 129951 -recovered pasa_asmbl_4205.p1, internal, 131059, 131103 -recovered pasa_asmbl_4205.p1, internal, 131586, 131639 -recovered pasa_asmbl_4205.p1, internal, 133427, 133534 -recovered pasa_asmbl_4205.p1, internal, 134042, 134095 -recovered pasa_asmbl_4205.p1, internal, 134535, 134588 -recovered pasa_asmbl_4205.p1, internal, 135729, 135773 -recovered pasa_asmbl_4205.p1, internal, 135923, 135976 -recovered pasa_asmbl_4205.p1, internal, 136121, 136165 -recovered pasa_asmbl_4205.p1, internal, 136274, 136327 -recovered pasa_asmbl_4205.p1, internal, 136483, 136536 -recovered pasa_asmbl_4205.p1, internal, 136633, 136686 -recovered pasa_asmbl_4205.p1, internal, 138597, 138704 -recovered pasa_asmbl_4205.p1, internal, 138935, 139024 -recovered pasa_asmbl_4205.p1, internal, 139764, 139817 -recovered pasa_asmbl_4205.p1, internal, 140102, 140209 -recovered pasa_asmbl_4205.p1, internal, 140501, 140608 -recovered pasa_asmbl_4205.p1, internal, 141797, 141850 -recovered pasa_asmbl_4205.p1, internal, 142227, 142280 -recovered pasa_asmbl_4205.p1, internal, 142438, 142545 -recovered pasa_asmbl_4205.p1, internal, 142656, 142709 -recovered pasa_asmbl_4205.p1, internal, 143055, 143162 -recovered pasa_asmbl_4205.p1, internal, 144923, 144976 -recovered pasa_asmbl_4205.p1, internal, 145125, 145232 -recovered pasa_asmbl_4205.p1, internal, 145585, 145638 -recovered pasa_asmbl_4205.p1, internal, 145750, 145803 -recovered pasa_asmbl_4205.p1, internal, 146017, 146070 -recovered pasa_asmbl_4205.p1, internal, 146220, 146273 -recovered pasa_asmbl_4205.p1, internal, 146541, 146648 -recovered pasa_asmbl_4205.p1, internal, 146808, 146861 -recovered pasa_asmbl_4205.p1, internal, 147107, 147160 -recovered pasa_asmbl_4205.p1, internal, 147586, 147693 -recovered pasa_asmbl_4205.p1, internal, 147838, 147891 -recovered pasa_asmbl_4205.p1, internal, 148012, 148047 -recovered pasa_asmbl_4205.p1, internal, 148136, 148189 -recovered pasa_asmbl_4205.p1, internal, 148302, 148566 -recovered pasa_asmbl_4205.p1, internal, 148909, 149021 -recovered pasa_asmbl_4205.p1, internal, 150841, 150909 -recovered pasa_asmbl_4205.p1, internal, 153787, 154020 Valid prediction for snap_scaffold_10-snap.257-T1 Valid prediction for GeneMark_model.42001_t Valid prediction for GeneMark_model.42031_t Valid prediction for GeneMark_model.42016_t Valid prediction for GeneMark_model.42034_t Valid prediction for snap_scaffold_10-snap.277-T1 Valid prediction for Augustus_model.g16510.t1 Valid prediction for GeneMark_model.42020_t Valid prediction for GeneMark_model.41999_t Valid prediction for GlimmerHMM_glimmerT_24624-T1 Valid prediction for GeneMark_model.41994_t Valid prediction for HiQ_model.g16513.t1 Valid prediction for GeneMark_model.42033_t Valid prediction for GeneMark_model.42044_t Valid prediction for snap_scaffold_10-snap.291-T1 Valid prediction for GeneMark_model.42037_t Valid prediction for GeneMark_model.41991_t Valid prediction for snap_scaffold_10-snap.290-T1 Valid prediction for snap_scaffold_10-snap.254-T1 Valid prediction for GlimmerHMM_glimmerT_24639-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.252-T1 Valid prediction for GeneMark_model.42019_t Valid prediction for GeneMark_model.42012_t Valid prediction for GeneMark_model.42028_t Valid prediction for GeneMark_model.42015_t Valid prediction for GlimmerHMM_glimmerT_24632-T1 Valid prediction for GeneMark_model.41990_t Valid prediction for GlimmerHMM_glimmerT_24626-T1 Valid prediction for GlimmerHMM_glimmerT_24638-T1 Valid prediction for GeneMark_model.42032_t Valid prediction for GlimmerHMM_glimmerT_24628-T1 Valid prediction for Augustus_model.g16518.t1 Valid prediction for snap_scaffold_10-snap.282-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.42005_t Valid prediction for GeneMark_model.42011_t Valid prediction for snap_scaffold_10-snap.258-T1 Valid prediction for snap_scaffold_10-snap.288-T1 Valid prediction for GeneMark_model.41983_t Valid prediction for snap_scaffold_10-snap.265-T1 Valid prediction for snap_scaffold_10-snap.263-T1 Valid prediction for snap_scaffold_10-snap.286-T1 Valid prediction for GeneMark_model.42003_t Valid prediction for GeneMark_model.42036_t Valid prediction for snap_scaffold_10-snap.266-T1 Valid prediction for GeneMark_model.41992_t Valid prediction for GeneMark_model.42002_t Valid prediction for GeneMark_model.42017_t Valid prediction for GlimmerHMM_glimmerT_24618-T1 Valid prediction for snap_scaffold_10-snap.280-T1 Valid prediction for snap_scaffold_10-snap.278-T1 Valid prediction for GeneMark_model.41995_t Valid prediction for GlimmerHMM_glimmerT_24636-T1 Valid prediction for GeneMark_model.41986_t Valid prediction for GeneMark_model.42027_t Valid prediction for GlimmerHMM_glimmerT_24629-T1 Valid prediction for GlimmerHMM_glimmerT_24622-T1 Valid prediction for GeneMark_model.42035_t Valid prediction for snap_scaffold_10-snap.272-T1 Valid prediction for snap_scaffold_10-snap.270-T1 Valid prediction for snap_scaffold_10-snap.279-T1 Valid prediction for GeneMark_model.41993_t Valid prediction for GeneMark_model.42043_t Valid prediction for GeneMark_model.42021_t Valid prediction for GeneMark_model.42030_t Valid prediction for GlimmerHMM_glimmerT_24619-T1 Valid prediction for GlimmerHMM_glimmerT_24617-T1 Valid prediction for GlimmerHMM_glimmerT_24631-T1 Valid prediction for GeneMark_model.42009_t Valid prediction for GeneMark_model.41998_t Valid prediction for snap_scaffold_10-snap.268-T1 Valid prediction for GeneMark_model.42038_t Valid prediction for snap_scaffold_10-snap.296-T1 Valid prediction for snap_scaffold_10-snap.260-T1 Valid prediction for snap_scaffold_10-snap.283-T1 Valid prediction for Augustus_model.g16516.t1 Valid prediction for GlimmerHMM_glimmerT_24633-T1 Valid prediction for snap_scaffold_10-snap.273-T1 Valid prediction for snap_scaffold_10-snap.295-T1 Valid prediction for GeneMark_model.42000_t Valid prediction for snap_scaffold_10-snap.259-T1 Valid prediction for snap_scaffold_10-snap.276-T1 Valid prediction for snap_scaffold_10-snap.253-T1 Valid prediction for GeneMark_model.42026_t Valid prediction for GeneMark_model.41997_t Valid prediction for snap_scaffold_10-snap.269-T1 Valid prediction for GeneMark_model.42040_t Valid prediction for snap_scaffold_10-snap.262-T1 Valid prediction for GeneMark_model.42042_t Valid prediction for GeneMark_model.41988_t Valid prediction for GlimmerHMM_glimmerT_24614-T1 Valid prediction for GeneMark_model.42023_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 28804, rend_intergenic: 26354 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42857, rend_intergenic: 39534 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50293, rend_intergenic: 47128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52500, rend_intergenic: 50400 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63941, rend_intergenic: 59303 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88528, rend_intergenic: 85967 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97109, rend_intergenic: 95250 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104202, rend_intergenic: 97492 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112011, rend_intergenic: 109647 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113824, rend_intergenic: 113227 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129949, rend_intergenic: 117745 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135300, rend_intergenic: 130937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154429, rend_intergenic: 148615 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176629, rend_intergenic: 171827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188974, rend_intergenic: 186132 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227692, rend_intergenic: 217738 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 236987 -exon list size: 905 building trellis 0.1 0.2 0.3 0.4 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.6 99.7 99.8 99.9 -found 32 predictions from path traversal Error with prediction: snap lend_intergenic: 28804, rend_intergenic: 26354 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42857, rend_intergenic: 39534 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50293, rend_intergenic: 47128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52500, rend_intergenic: 50400 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63941, rend_intergenic: 59303 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88528, rend_intergenic: 85967 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97109, rend_intergenic: 95250 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104202, rend_intergenic: 97492 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112011, rend_intergenic: 109647 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113824, rend_intergenic: 113227 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129949, rend_intergenic: 117745 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135300, rend_intergenic: 130937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154429, rend_intergenic: 148615 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176629, rend_intergenic: 171827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188974, rend_intergenic: 186132 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227692, rend_intergenic: 217738 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 12 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 20063 -exon list size: 64 building trellis 1.5 3.0 4.5 6.1 7.6 9.1 10.6 12.1 13.6 15.2 16.7 18.2 19.7 21.2 22.7 24.2 25.8 27.3 28.8 30.3 31.8 33.3 34.8 36.4 37.9 39.4 40.9 42.4 43.9 45.5 47.0 48.5 50.0 51.5 53.0 54.5 56.1 57.6 59.1 60.6 62.1 63.6 65.2 66.7 68.2 69.7 71.2 72.7 74.2 75.8 77.3 78.8 80.3 81.8 83.3 84.8 86.4 87.9 89.4 90.9 92.4 93.9 95.5 97.0 98.5 -found 3 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support -building DP trellis -building trellis in range 222840 - 236987 -exon list size: 32 building trellis 2.9 5.9 8.8 11.8 14.7 17.6 20.6 23.5 26.5 29.4 32.4 35.3 38.2 41.2 44.1 47.1 50.0 52.9 55.9 58.8 61.8 64.7 67.6 70.6 73.5 76.5 79.4 82.4 85.3 88.2 91.2 94.1 97.1 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support -building DP trellis -building trellis in range 226081 - 236987 -exon list size: 25 building trellis 3.7 7.4 11.1 14.8 18.5 22.2 25.9 29.6 33.3 37.0 40.7 44.4 48.1 51.9 55.6 59.3 63.0 66.7 70.4 74.1 77.8 81.5 85.2 88.9 92.6 96.3 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 226934 - 236987 -exon list size: 23 building trellis 4.0 8.0 12.0 16.0 20.0 24.0 28.0 32.0 36.0 40.0 44.0 48.0 52.0 56.0 60.0 64.0 68.0 72.0 76.0 80.0 84.0 88.0 92.0 96.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support