-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_10039235-10200768

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.44109_t
Valid prediction for GeneMark_model.44115_t
Valid prediction for GlimmerHMM_glimmerT_25778-T1
Valid prediction for snap_scaffold_10-snap.1945-T1
Valid prediction for snap_scaffold_10-snap.1968-T1
Valid prediction for snap_scaffold_10-snap.1947-T1
Valid prediction for snap_scaffold_10-snap.1970-T1
Valid prediction for GeneMark_model.44104_t
Valid prediction for snap_scaffold_10-snap.1949-T1
Valid prediction for snap_scaffold_10-snap.1959-T1
Valid prediction for GeneMark_model.44114_t
Valid prediction for GeneMark_model.44101_t
Valid prediction for GeneMark_model.44133_t
Valid prediction for GeneMark_model.44126_t
Valid prediction for snap_scaffold_10-snap.1965-T1
Valid prediction for GeneMark_model.44130_t
Valid prediction for GeneMark_model.44098_t
Valid prediction for GeneMark_model.44125_t
Valid prediction for snap_scaffold_10-snap.1966-T1
Valid prediction for snap_scaffold_10-snap.1962-T1
Valid prediction for GeneMark_model.44121_t
Valid prediction for snap_scaffold_10-snap.1961-T1
Valid prediction for Augustus_model.g17292.t1
Valid prediction for GeneMark_model.44111_t
Valid prediction for snap_scaffold_10-snap.1950-T1
Valid prediction for GeneMark_model.44127_t
Valid prediction for GlimmerHMM_glimmerT_25782-T1
Valid prediction for GeneMark_model.44124_t
Valid prediction for snap_scaffold_10-snap.1956-T1
Valid prediction for GeneMark_model.44106_t
Valid prediction for GeneMark_model.44119_t
Valid prediction for Augustus_model.g17297.t1
Valid prediction for GeneMark_model.44136_t
Valid prediction for snap_scaffold_10-snap.1954-T1
Valid prediction for GeneMark_model.44102_t
Valid prediction for GeneMark_model.44107_t
Valid prediction for snap_scaffold_10-snap.1969-T1
Valid prediction for GeneMark_model.44132_t
Valid prediction for GlimmerHMM_glimmerT_25773-T1
Valid prediction for GlimmerHMM_glimmerT_25779-T1
Valid prediction for GeneMark_model.44103_t
Valid prediction for GeneMark_model.44100_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.1967-T1
Valid prediction for GeneMark_model.44110_t
Valid prediction for GeneMark_model.44118_t
Valid prediction for Augustus_model.g17295.t1
Valid prediction for GeneMark_model.44123_t
Valid prediction for GlimmerHMM_glimmerT_25772-T1
Valid prediction for GeneMark_model.44112_t
Valid prediction for GlimmerHMM_glimmerT_25769-T1
Valid prediction for GeneMark_model.44134_t
Valid prediction for GlimmerHMM_glimmerT_25776-T1
Valid prediction for GeneMark_model.44105_t
Valid prediction for GlimmerHMM_glimmerT_25783-T1
Valid prediction for GeneMark_model.44131_t
Valid prediction for snap_scaffold_10-snap.1973-T1
Valid prediction for GeneMark_model.44129_t
Valid prediction for snap_scaffold_10-snap.1948-T1
Valid prediction for GeneMark_model.44099_t
Valid prediction for snap_scaffold_10-snap.1955-T1
Valid prediction for snap_scaffold_10-snap.1960-T1
Valid prediction for GlimmerHMM_glimmerT_25775-T1
Valid prediction for GlimmerHMM_glimmerT_25774-T1
Valid prediction for GeneMark_model.44137_t
Valid prediction for snap_scaffold_10-snap.1952-T1
Valid prediction for GlimmerHMM_glimmerT_25777-T1
Valid prediction for snap_scaffold_10-snap.1964-T1
Valid prediction for GeneMark_model.44113_t
Valid prediction for snap_scaffold_10-snap.1957-T1
Valid prediction for snap_scaffold_10-snap.1971-T1
Valid prediction for GeneMark_model.44122_t
Couldn't classify 100431, 102038
Sorry, prediction pasa_asmbl_3612.p1 fails validation.
(CCT)	 CG	100431-102038	GT	AGG
(CAA)	 AG	102624-102712	GT	AGG
(GTA)	 AG	103531-103700	GT	AGG
(CTA)	 AG	105102-105865	AC	AGA
-recovered pasa_asmbl_3612.p1, terminal, 105102, 105865
-recovered pasa_asmbl_3612.p1, internal, 102624, 102712
-recovered pasa_asmbl_3612.p1, internal, 103531, 103700
Valid prediction for GeneMark_model.44097_t
Valid prediction for HiQ_model.g17293.t1
Valid prediction for GlimmerHMM_glimmerT_25780-T1
Valid prediction for GeneMark_model.44120_t
Valid prediction for GeneMark_model.44128_t
Valid prediction for snap_scaffold_10-snap.1953-T1
Valid prediction for GlimmerHMM_glimmerT_25771-T1
Valid prediction for snap_scaffold_10-snap.1958-T1
Valid prediction for GlimmerHMM_glimmerT_25768-T1
Valid prediction for GeneMark_model.44116_t
Valid prediction for GeneMark_model.44117_t
Valid prediction for Augustus_model.g17294.t1
Valid prediction for snap_scaffold_10-snap.1946-T1
Valid prediction for snap_scaffold_10-snap.1963-T1
Valid prediction for GeneMark_model.44135_t
Valid prediction for snap_scaffold_10-snap.1951-T1
Valid prediction for GlimmerHMM_glimmerT_25781-T1
Valid prediction for GlimmerHMM_glimmerT_25770-T1
Valid prediction for Augustus_model.g17296.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14688, rend_intergenic: 10150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55027, rend_intergenic: 40392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82560, rend_intergenic: 70655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99582, rend_intergenic: 94233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119015, rend_intergenic: 110274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132056, rend_intergenic: 120213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 161534
-exon list size: 446


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
1.3    
1.6    
1.8    
2.0    
2.2    
2.5    
2.7    
2.9    
3.1    
3.3    
3.6    
3.8    
4.0    
4.2    
4.5    
4.7    
4.9    
5.1    
5.4    
5.6    
5.8    
6.0    
6.2    
6.5    
6.7    
6.9    
7.1    
7.4    
7.6    
7.8    
8.0    
8.3    
8.5    
8.7    
8.9    
9.2    
9.4    
9.6    
9.8    
10.0    
10.3    
10.5    
10.7    
10.9    
11.2    
11.4    
11.6    
11.8    
12.1    
12.3    
12.5    
12.7    
12.9    
13.2    
13.4    
13.6    
13.8    
14.1    
14.3    
14.5    
14.7    
15.0    
15.2    
15.4    
15.6    
15.8    
16.1    
16.3    
16.5    
16.7    
17.0    
17.2    
17.4    
17.6    
17.9    
18.1    
18.3    
18.5    
18.8    
19.0    
19.2    
19.4    
19.6    
19.9    
20.1    
20.3    
20.5    
20.8    
21.0    
21.2    
21.4    
21.7    
21.9    
22.1    
22.3    
22.5    
22.8    
23.0    
23.2    
23.4    
23.7    
23.9    
24.1    
24.3    
24.6    
24.8    
25.0    
25.2    
25.4    
25.7    
25.9    
26.1    
26.3    
26.6    
26.8    
27.0    
27.2    
27.5    
27.7    
27.9    
28.1    
28.3    
28.6    
28.8    
29.0    
29.2    
29.5    
29.7    
29.9    
30.1    
30.4    
30.6    
30.8    
31.0    
31.2    
31.5    
31.7    
31.9    
32.1    
32.4    
32.6    
32.8    
33.0    
33.3    
33.5    
33.7    
33.9    
34.2    
34.4    
34.6    
34.8    
35.0    
35.3    
35.5    
35.7    
35.9    
36.2    
36.4    
36.6    
36.8    
37.1    
37.3    
37.5    
37.7    
37.9    
38.2    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.8    
41.1    
41.3    
41.5    
41.7    
42.0    
42.2    
42.4    
42.6    
42.9    
43.1    
43.3    
43.5    
43.8    
44.0    
44.2    
44.4    
44.6    
44.9    
45.1    
45.3    
45.5    
45.8    
46.0    
46.2    
46.4    
46.7    
46.9    
47.1    
47.3    
47.5    
47.8    
48.0    
48.2    
48.4    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
50.2    
50.4    
50.7    
50.9    
51.1    
51.3    
51.6    
51.8    
52.0    
52.2    
52.5    
52.7    
52.9    
53.1    
53.3    
53.6    
53.8    
54.0    
54.2    
54.5    
54.7    
54.9    
55.1    
55.4    
55.6    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.1    
57.4    
57.6    
57.8    
58.0    
58.3    
58.5    
58.7    
58.9    
59.2    
59.4    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.8    
62.1    
62.3    
62.5    
62.7    
62.9    
63.2    
63.4    
63.6    
63.8    
64.1    
64.3    
64.5    
64.7    
65.0    
65.2    
65.4    
65.6    
65.8    
66.1    
66.3    
66.5    
66.7    
67.0    
67.2    
67.4    
67.6    
67.9    
68.1    
68.3    
68.5    
68.8    
69.0    
69.2    
69.4    
69.6    
69.9    
70.1    
70.3    
70.5    
70.8    
71.0    
71.2    
71.4    
71.7    
71.9    
72.1    
72.3    
72.5    
72.8    
73.0    
73.2    
73.4    
73.7    
73.9    
74.1    
74.3    
74.6    
74.8    
75.0    
75.2    
75.4    
75.7    
75.9    
76.1    
76.3    
76.6    
76.8    
77.0    
77.2    
77.5    
77.7    
77.9    
78.1    
78.3    
78.6    
78.8    
79.0    
79.2    
79.5    
79.7    
79.9    
80.1    
80.4    
80.6    
80.8    
81.0    
81.2    
81.5    
81.7    
81.9    
82.1    
82.4    
82.6    
82.8    
83.0    
83.3    
83.5    
83.7    
83.9    
84.2    
84.4    
84.6    
84.8    
85.0    
85.3    
85.5    
85.7    
85.9    
86.2    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.7    
87.9    
88.2    
88.4    
88.6    
88.8    
89.1    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.6    
90.8    
91.1    
91.3    
91.5    
91.7    
92.0    
92.2    
92.4    
92.6    
92.9    
93.1    
93.3    
93.5    
93.8    
94.0    
94.2    
94.4    
94.6    
94.9    
95.1    
95.3    
95.5    
95.8    
96.0    
96.2    
96.4    
96.7    
96.9    
97.1    
97.3    
97.5    
97.8    
98.0    
98.2    
98.4    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 14688, rend_intergenic: 10150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55027, rend_intergenic: 40392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82560, rend_intergenic: 70655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99582, rend_intergenic: 94233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119015, rend_intergenic: 110274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132056, rend_intergenic: 120213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 24612
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 23799
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 22315
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12370
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support