-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_8156562-8289319

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1-snap.1477-T1
Valid prediction for GeneMark_model.1553_t
Valid prediction for GeneMark_model.1546_t
Valid prediction for snap_scaffold_1-snap.1461-T1
Valid prediction for GeneMark_model.1515_t
Valid prediction for Augustus_model.g860.t1
Valid prediction for GeneMark_model.1538_t
Valid prediction for GeneMark_model.1545_t
Valid prediction for snap_scaffold_1-snap.1467-T1
Valid prediction for GeneMark_model.1559_t
Valid prediction for GlimmerHMM_glimmerT_1191-T1
Valid prediction for GlimmerHMM_glimmerT_1188-T1
Valid prediction for GeneMark_model.1513_t
Valid prediction for GlimmerHMM_glimmerT_1181-T1
Valid prediction for GeneMark_model.1548_t
Valid prediction for snap_scaffold_1-snap.1476-T1
Valid prediction for GeneMark_model.1533_t
Valid prediction for GeneMark_model.1540_t
Valid prediction for snap_scaffold_1-snap.1473-T1
Valid prediction for GeneMark_model.1552_t
Valid prediction for snap_scaffold_1-snap.1483-T1
Valid prediction for GeneMark_model.1563_t
Valid prediction for GeneMark_model.1524_t
Valid prediction for GeneMark_model.1519_t
Valid prediction for GeneMark_model.1520_t
Valid prediction for snap_scaffold_1-snap.1482-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_1194-T1
Valid prediction for Augustus_model.g855.t1
Valid prediction for GeneMark_model.1523_t
Valid prediction for GeneMark_model.1531_t
Valid prediction for GeneMark_model.1517_t
Valid prediction for snap_scaffold_1-snap.1487-T1
Valid prediction for GeneMark_model.1565_t
Valid prediction for GlimmerHMM_glimmerT_1185-T1
Valid prediction for GeneMark_model.1526_t
Valid prediction for snap_scaffold_1-snap.1490-T1
Valid prediction for GlimmerHMM_glimmerT_1173-T1
Valid prediction for Augustus_model.g856.t1
Valid prediction for GeneMark_model.1509_t
Valid prediction for GeneMark_model.1536_t
Valid prediction for GlimmerHMM_glimmerT_1189-T1
Valid prediction for snap_scaffold_1-snap.1484-T1
Valid prediction for GlimmerHMM_glimmerT_1186-T1
Valid prediction for GeneMark_model.1561_t
Valid prediction for GeneMark_model.1529_t
Valid prediction for GeneMark_model.1544_t
Valid prediction for snap_scaffold_1-snap.1480-T1
Valid prediction for snap_scaffold_1-snap.1479-T1
Valid prediction for GlimmerHMM_glimmerT_1179-T1
Valid prediction for GeneMark_model.1550_t
Valid prediction for snap_scaffold_1-snap.1485-T1
Valid prediction for GeneMark_model.1558_t
Valid prediction for GeneMark_model.1556_t
Valid prediction for GlimmerHMM_glimmerT_1180-T1
Valid prediction for snap_scaffold_1-snap.1466-T1
Valid prediction for snap_scaffold_1-snap.1472-T1
Valid prediction for GeneMark_model.1542_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.1547_t
Valid prediction for Augustus_model.g863.t1
Valid prediction for GlimmerHMM_glimmerT_1184-T1
Valid prediction for Augustus_model.g864.t1
Valid prediction for GeneMark_model.1530_t
Valid prediction for Augustus_model.g858.t1
Valid prediction for GlimmerHMM_glimmerT_1197-T1
Valid prediction for GeneMark_model.1522_t
Valid prediction for snap_scaffold_1-snap.1464-T1
Valid prediction for GeneMark_model.1537_t
Valid prediction for GeneMark_model.1562_t
Valid prediction for GeneMark_model.1534_t
Valid prediction for GeneMark_model.1551_t
Valid prediction for GlimmerHMM_glimmerT_1182-T1
Valid prediction for snap_scaffold_1-snap.1488-T1
Valid prediction for GeneMark_model.1535_t
Valid prediction for GlimmerHMM_glimmerT_1176-T1
Valid prediction for GeneMark_model.1511_t
Valid prediction for GeneMark_model.1555_t
Valid prediction for Augustus_model.g857.t1
Valid prediction for Augustus_model.g859.t1
Valid prediction for GlimmerHMM_glimmerT_1174-T1
Valid prediction for GlimmerHMM_glimmerT_1175-T1
Valid prediction for GlimmerHMM_glimmerT_1195-T1
Valid prediction for snap_scaffold_1-snap.1471-T1
Valid prediction for Augustus_model.g853.t1
Valid prediction for GeneMark_model.1557_t
Valid prediction for snap_scaffold_1-snap.1486-T1
Valid prediction for GeneMark_model.1527_t
Valid prediction for GeneMark_model.1521_t
Valid prediction for GlimmerHMM_glimmerT_1178-T1
Valid prediction for snap_scaffold_1-snap.1478-T1
Valid prediction for GeneMark_model.1554_t
Valid prediction for snap_scaffold_1-snap.1481-T1
Valid prediction for GeneMark_model.1539_t
Valid prediction for GlimmerHMM_glimmerT_1190-T1
Valid prediction for snap_scaffold_1-snap.1475-T1
Valid prediction for GeneMark_model.1532_t
Valid prediction for snap_scaffold_1-snap.1462-T1
Valid prediction for GeneMark_model.1510_t
Valid prediction for GeneMark_model.1516_t
Valid prediction for GeneMark_model.1528_t
Valid prediction for snap_scaffold_1-snap.1469-T1
Valid prediction for GlimmerHMM_glimmerT_1192-T1
Valid prediction for GeneMark_model.1512_t
Valid prediction for GeneMark_model.1549_t
Valid prediction for GeneMark_model.1543_t
Valid prediction for GlimmerHMM_glimmerT_1198-T1
Valid prediction for Augustus_model.g861.t1
Valid prediction for GlimmerHMM_glimmerT_1196-T1
Valid prediction for snap_scaffold_1-snap.1465-T1
Valid prediction for snap_scaffold_1-snap.1468-T1
Valid prediction for GeneMark_model.1564_t
Valid prediction for GeneMark_model.1518_t
Valid prediction for GlimmerHMM_glimmerT_1187-T1
Valid prediction for GeneMark_model.1560_t
Valid prediction for GeneMark_model.1525_t
Valid prediction for Augustus_model.g862.t1
Valid prediction for snap_scaffold_1-snap.1463-T1
Valid prediction for GlimmerHMM_glimmerT_1183-T1
Valid prediction for Augustus_model.g854.t1
Valid prediction for GlimmerHMM_glimmerT_1177-T1
Valid prediction for GeneMark_model.1541_t
Valid prediction for snap_scaffold_1-snap.1470-T1
Valid prediction for GlimmerHMM_glimmerT_1193-T1
Valid prediction for snap_scaffold_1-snap.1474-T1
Valid prediction for GeneMark_model.1508_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8149, rend_intergenic: 6441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28535, rend_intergenic: 23981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72763, rend_intergenic: 60361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84181, rend_intergenic: 74761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84907, rend_intergenic: 84736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107763, rend_intergenic: 85583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109080, rend_intergenic: 108402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118684, rend_intergenic: 116490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121369, rend_intergenic: 118854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 132758
-exon list size: 612


building trellis

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87.0    
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88.1    
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92.8    
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93.2    
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93.6    
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94.6    
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95.0    
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95.3    
95.4    
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96.1    
96.3    
96.4    
96.6    
96.7    
96.9    
97.1    
97.2    
97.4    
97.6    
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98.0    
98.2    
98.4    
98.5    
98.7    
98.9    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 8149, rend_intergenic: 6441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28535, rend_intergenic: 23981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72763, rend_intergenic: 60361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84181, rend_intergenic: 74761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84907, rend_intergenic: 84736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107763, rend_intergenic: 85583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109080, rend_intergenic: 108402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118684, rend_intergenic: 116490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121369, rend_intergenic: 118854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support