-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_7793793-7938650

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g835.t1
Valid prediction for GlimmerHMM_glimmerT_1134-T1
Valid prediction for GeneMark_model.1441_t
Valid prediction for GeneMark_model.1443_t
Valid prediction for snap_scaffold_1-snap.1416-T1
Valid prediction for GlimmerHMM_glimmerT_1141-T1
Valid prediction for snap_scaffold_1-snap.1420-T1
Valid prediction for snap_scaffold_1-snap.1429-T1
Valid prediction for GeneMark_model.1426_t
Valid prediction for GeneMark_model.1432_t
Valid prediction for Augustus_model.g834.t1
Valid prediction for snap_scaffold_1-snap.1408-T1
Valid prediction for HiQ_model.g824.t1
Valid prediction for snap_scaffold_1-snap.1415-T1
Valid prediction for snap_scaffold_1-snap.1402-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.1438_t
Valid prediction for GeneMark_model.1433_t
Valid prediction for GeneMark_model.1447_t
Valid prediction for GeneMark_model.1445_t
Valid prediction for GeneMark_model.1458_t
Valid prediction for GeneMark_model.1421_t
Valid prediction for snap_scaffold_1-snap.1403-T1
Valid prediction for GeneMark_model.1424_t
Valid prediction for snap_scaffold_1-snap.1425-T1
Valid prediction for snap_scaffold_1-snap.1407-T1
Valid prediction for GeneMark_model.1453_t
Valid prediction for snap_scaffold_1-snap.1428-T1
Valid prediction for snap_scaffold_1-snap.1413-T1
Valid prediction for GeneMark_model.1451_t
Valid prediction for snap_scaffold_1-snap.1405-T1
Valid prediction for GlimmerHMM_glimmerT_1142-T1
Valid prediction for GlimmerHMM_glimmerT_1138-T1
Valid prediction for snap_scaffold_1-snap.1430-T1
Valid prediction for GeneMark_model.1456_t
Valid prediction for GeneMark_model.1463_t
Valid prediction for Augustus_model.g836.t1
Valid prediction for GlimmerHMM_glimmerT_1132-T1
Valid prediction for GlimmerHMM_glimmerT_1137-T1
Valid prediction for Augustus_model.g827.t1
Valid prediction for snap_scaffold_1-snap.1423-T1
Valid prediction for GeneMark_model.1460_t
Valid prediction for GlimmerHMM_glimmerT_1144-T1
Valid prediction for GlimmerHMM_glimmerT_1133-T1
Valid prediction for snap_scaffold_1-snap.1422-T1
Valid prediction for GeneMark_model.1420_t
Valid prediction for pasa_asmbl_1918.p1
Valid prediction for GlimmerHMM_glimmerT_1139-T1
Valid prediction for Augustus_model.g826.t1
Valid prediction for GeneMark_model.1428_t
Valid prediction for snap_scaffold_1-snap.1426-T1
Valid prediction for GeneMark_model.1435_t
Valid prediction for snap_scaffold_1-snap.1431-T1
Valid prediction for Augustus_model.g830.t1
Valid prediction for snap_scaffold_1-snap.1417-T1
Valid prediction for GeneMark_model.1430_t
Valid prediction for snap_scaffold_1-snap.1411-T1
Valid prediction for GlimmerHMM_glimmerT_1140-T1
Valid prediction for Augustus_model.g828.t1
Valid prediction for GlimmerHMM_glimmerT_1135-T1
Valid prediction for CodingQuarry_transcript_2697-T1
Valid prediction for Augustus_model.g832.t1
Valid prediction for Augustus_model.g831.t1
Valid prediction for Augustus_model.g825.t1
Valid prediction for Augustus_model.g833.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.1409-T1
Valid prediction for snap_scaffold_1-snap.1421-T1
Valid prediction for GeneMark_model.1423_t
Valid prediction for GeneMark_model.1429_t
Valid prediction for snap_scaffold_1-snap.1401-T1
Valid prediction for snap_scaffold_1-snap.1427-T1
Valid prediction for snap_scaffold_1-snap.1406-T1
Valid prediction for Augustus_model.g823.t1
Valid prediction for GeneMark_model.1446_t
Valid prediction for GeneMark_model.1440_t
Valid prediction for GeneMark_model.1455_t
Valid prediction for GeneMark_model.1450_t
Valid prediction for GeneMark_model.1425_t
Valid prediction for Augustus_model.g829.t1
Valid prediction for GeneMark_model.1437_t
Valid prediction for snap_scaffold_1-snap.1424-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_1-snap.1419-T1
Valid prediction for snap_scaffold_1-snap.1404-T1
Valid prediction for GeneMark_model.1434_t
Valid prediction for CodingQuarry_transcript_2696-T1
Valid prediction for GeneMark_model.1461_t
Valid prediction for GlimmerHMM_glimmerT_1136-T1
Valid prediction for GeneMark_model.1464_t
Valid prediction for snap_scaffold_1-snap.1414-T1
Valid prediction for snap_scaffold_1-snap.1412-T1
Valid prediction for pasa_asmbl_448.p1
Valid prediction for GeneMark_model.1442_t
Valid prediction for GeneMark_model.1459_t
Valid prediction for GeneMark_model.1462_t
Valid prediction for GeneMark_model.1454_t
Valid prediction for GeneMark_model.1448_t
Valid prediction for snap_scaffold_1-snap.1418-T1
Valid prediction for GlimmerHMM_glimmerT_1131-T1
Valid prediction for GlimmerHMM_glimmerT_1143-T1
Valid prediction for GeneMark_model.1444_t
Valid prediction for GeneMark_model.1431_t
Valid prediction for HiQ_model.g822.t1
Valid prediction for GeneMark_model.1457_t
Valid prediction for GeneMark_model.1449_t
Valid prediction for snap_scaffold_1-snap.1410-T1
Valid prediction for GeneMark_model.1439_t
Valid prediction for GeneMark_model.1427_t
Valid prediction for GeneMark_model.1436_t
Valid prediction for GeneMark_model.1452_t
Valid prediction for GeneMark_model.1422_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8763, rend_intergenic: 5862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14047, rend_intergenic: 9781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16008, rend_intergenic: 14772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36607, rend_intergenic: 25557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43572, rend_intergenic: 36671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62279, rend_intergenic: 61823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68221, rend_intergenic: 64523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90278, rend_intergenic: 83050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93197, rend_intergenic: 90279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106567, rend_intergenic: 94157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117849, rend_intergenic: 112110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119697, rend_intergenic: 117856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 144858
-exon list size: 540


building trellis

0.2    
0.4    
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0.9    
1.1    
1.3    
1.5    
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1.8    
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2.2    
2.4    
2.6    
2.8    
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3.7    
3.9    
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5.7    
5.9    
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6.8    
7.0    
7.2    
7.4    
7.6    
7.7    
7.9    
8.1    
8.3    
8.5    
8.7    
8.9    
9.0    
9.2    
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9.8    
10.0    
10.1    
10.3    
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10.9    
11.1    
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11.6    
11.8    
12.0    
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12.9    
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13.3    
13.5    
13.7    
13.8    
14.0    
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14.6    
14.8    
14.9    
15.1    
15.3    
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16.4    
16.6    
16.8    
17.0    
17.2    
17.3    
17.5    
17.7    
17.9    
18.1    
18.3    
18.5    
18.6    
18.8    
19.0    
19.2    
19.4    
19.6    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.1    
22.3    
22.5    
22.7    
22.9    
23.1    
23.2    
23.4    
23.6    
23.8    
24.0    
24.2    
24.4    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.6    
25.8    
26.0    
26.2    
26.4    
26.6    
26.8    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.0    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.4    
30.6    
30.8    
31.0    
31.2    
31.4    
31.5    
31.7    
31.9    
32.1    
32.3    
32.5    
32.7    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
33.9    
34.1    
34.3    
34.5    
34.7    
34.9    
35.1    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.9    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.1    
41.3    
41.5    
41.7    
41.9    
42.1    
42.3    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.5    
43.7    
43.9    
44.1    
44.3    
44.5    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
45.9    
46.1    
46.3    
46.5    
46.7    
46.9    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.2    
48.3    
48.5    
48.7    
48.9    
49.1    
49.3    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.7    
50.9    
51.1    
51.3    
51.5    
51.7    
51.8    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.1    
53.3    
53.5    
53.7    
53.9    
54.1    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.5    
55.7    
55.9    
56.1    
56.3    
56.5    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.9    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
64.9    
65.1    
65.3    
65.5    
65.7    
65.9    
66.1    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.3    
67.5    
67.7    
67.9    
68.1    
68.3    
68.5    
68.6    
68.8    
69.0    
69.2    
69.4    
69.6    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.2    
73.4    
73.6    
73.8    
74.0    
74.2    
74.4    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.4    
80.6    
80.8    
81.0    
81.2    
81.4    
81.5    
81.7    
81.9    
82.1    
82.3    
82.5    
82.7    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.9    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.1    
91.3    
91.5    
91.7    
91.9    
92.1    
92.3    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.2    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.4    
99.6    
99.8    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 8763, rend_intergenic: 5862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14047, rend_intergenic: 9781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16008, rend_intergenic: 14772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36607, rend_intergenic: 25557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43572, rend_intergenic: 36671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62279, rend_intergenic: 61823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68221, rend_intergenic: 64523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90278, rend_intergenic: 83050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93197, rend_intergenic: 90279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106567, rend_intergenic: 94157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117849, rend_intergenic: 112110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119697, rend_intergenic: 117856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support