-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_6898318-7054567

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.1209_t
Valid prediction for snap_scaffold_1-snap.1193-T1
Valid prediction for GeneMark_model.1215_t
Valid prediction for snap_scaffold_1-snap.1196-T1
Valid prediction for CodingQuarry_transcript_2665-T1
Valid prediction for GlimmerHMM_glimmerT_977-T1
Valid prediction for pasa_asmbl_1854.p1
Valid prediction for GlimmerHMM_glimmerT_975-T1
Valid prediction for GeneMark_model.1218_t
Valid prediction for CodingQuarry_transcript_2667-T1
Valid prediction for GlimmerHMM_glimmerT_963-T1
Valid prediction for snap_scaffold_1-snap.1212-T1
Couldn't classify 81763, 81841
Sorry, prediction pasa_asmbl_1867.p1 fails validation.
(GTC)	 AT	81763-81841	GT	AGG
(ACT)	 AG	81951-82125	GT	AAG
(GCT)	 AG	82309-82345	GT	GGG
(TTC)	 AG	82460-82606	GT	AGG
(ATC)	 AG	82922-82972	GT	TGG
(GAT)	 AG	83145-83234	GT	AGG
(GAC)	 AG	83357-83509	CC	AAC
-recovered pasa_asmbl_1867.p1, terminal, 83357, 83509
-recovered pasa_asmbl_1867.p1, internal, 81951, 82125
-recovered pasa_asmbl_1867.p1, internal, 82309, 82345
-recovered pasa_asmbl_1867.p1, internal, 82460, 82606
-recovered pasa_asmbl_1867.p1, internal, 82922, 82972
-recovered pasa_asmbl_1867.p1, internal, 83145, 83234
Valid prediction for GeneMark_model.1205_t
Valid prediction for snap_scaffold_1-snap.1192-T1
Valid prediction for GlimmerHMM_glimmerT_979-T1
Valid prediction for snap_scaffold_1-snap.1209-T1
Valid prediction for GeneMark_model.1201_t
Valid prediction for GlimmerHMM_glimmerT_982-T1
Valid prediction for snap_scaffold_1-snap.1206-T1
Valid prediction for snap_scaffold_1-snap.1211-T1
Valid prediction for Augustus_model.g727.t1
Valid prediction for GeneMark_model.1222_t
Valid prediction for snap_scaffold_1-snap.1217-T1
Couldn't classify 73594, 73801
Sorry, prediction pasa_asmbl_1862.p1 fails validation.
(CTG)	 TC	73594-73801	GT	AGG
(CCA)	 AG	74178-74423	GT	AGG
(GAG)	 AG	74598-74769	GT	GAG
(AGC)	 AG	74973-75258	GT	AGG
(GTG)	 AG	75433-75732	GC	GAG
-recovered pasa_asmbl_1862.p1, terminal, 75433, 75732
-recovered pasa_asmbl_1862.p1, internal, 74178, 74423
-recovered pasa_asmbl_1862.p1, internal, 74598, 74769
-recovered pasa_asmbl_1862.p1, internal, 74973, 75258
-recovered pasa_asmbl_1862.p1, internal, 75433, 75732
Valid prediction for GeneMark_model.1235_t
Valid prediction for GlimmerHMM_glimmerT_972-T1
Valid prediction for GlimmerHMM_glimmerT_968-T1
Valid prediction for GeneMark_model.1220_t
Valid prediction for GlimmerHMM_glimmerT_996-T1
Valid prediction for HiQ_model.g717.t1
Valid prediction for GeneMark_model.1230_t
Valid prediction for GeneMark_model.1214_t
Valid prediction for GlimmerHMM_glimmerT_976-T1
Valid prediction for pasa_asmbl_1875.p1
Valid prediction for snap_scaffold_1-snap.1202-T1
Valid prediction for Augustus_model.g725.t1
Valid prediction for snap_scaffold_1-snap.1189-T1
Valid prediction for GeneMark_model.1203_t
Valid prediction for GlimmerHMM_glimmerT_984-T1
Valid prediction for CodingQuarry_transcript_2668-T1
Valid prediction for snap_scaffold_1-snap.1191-T1
Valid prediction for GlimmerHMM_glimmerT_994-T1
Valid prediction for GeneMark_model.1237_t
Valid prediction for GeneMark_model.1193_t
Valid prediction for GlimmerHMM_glimmerT_993-T1
Valid prediction for CodingQuarry_transcript_2672-T1
Valid prediction for snap_scaffold_1-snap.1198-T1
Valid prediction for snap_scaffold_1-snap.1220-T1
Valid prediction for GlimmerHMM_glimmerT_983-T1
Valid prediction for GeneMark_model.1217_t
Valid prediction for GeneMark_model.1228_t
Couldn't classify 46894, 47001
Sorry, prediction pasa_asmbl_1852.p1 fails validation.
(CTT)	 GC	46894-47001	GT	AGG
(AGA)	 AG	47353-47433	GT	AGG
(TCG)	 AG	47548-47653	GT	AGG
(CTT)	 AG	48043-48122	GT	AGG
(GTT)	 AG	48251-48310	GT	AGG
(AGC)	 AG	48403-48458	GT	AGG
(GTG)	 AG	48810-48932	GT	AGG
(CTG)	 AG	49143-49238	GT	CCG
(GCC)	 AG	49758-49852	GT	AGG
(GCG)	 AG	49987-50052	GT	AGG
(GTG)	 AG	50178-50242	GT	AGG
(GGG)	 AG	50396-50485	GT	TGG
(GAG)	 AG	50584-50637	GT	AGG
(AGC)	 AG	50757-50866	GT	AGG
(ACA)	 AG	50951-51053	GT	AGG
(GAT)	 AG	51238-51312	GT	TGG
(ACC)	 AG	51434-51565	CC	AAC
-recovered pasa_asmbl_1852.p1, terminal, 51434, 51565
-recovered pasa_asmbl_1852.p1, internal, 47353, 47433
-recovered pasa_asmbl_1852.p1, internal, 47548, 47653
-recovered pasa_asmbl_1852.p1, internal, 48043, 48122
-recovered pasa_asmbl_1852.p1, internal, 48251, 48310
-recovered pasa_asmbl_1852.p1, internal, 48403, 48458
-recovered pasa_asmbl_1852.p1, internal, 48810, 48932
-recovered pasa_asmbl_1852.p1, internal, 49143, 49238
-recovered pasa_asmbl_1852.p1, internal, 49758, 49852
-recovered pasa_asmbl_1852.p1, internal, 49987, 50052
-recovered pasa_asmbl_1852.p1, internal, 50178, 50242
-recovered pasa_asmbl_1852.p1, internal, 50396, 50485
-recovered pasa_asmbl_1852.p1, internal, 50584, 50637
-recovered pasa_asmbl_1852.p1, internal, 50757, 50866
-recovered pasa_asmbl_1852.p1, internal, 50951, 51053
-recovered pasa_asmbl_1852.p1, internal, 51238, 51312
Valid prediction for GeneMark_model.1199_t
Valid prediction for GlimmerHMM_glimmerT_991-T1
Valid prediction for GeneMark_model.1219_t
Valid prediction for GeneMark_model.1226_t
Valid prediction for HiQ_model.g722.t1
Valid prediction for HiQ_model.g719.t1
Valid prediction for GeneMark_model.1198_t
Valid prediction for pasa_asmbl_1858.p1
Valid prediction for pasa_asmbl_1857.p1
Valid prediction for Augustus_model.g713.t1
Valid prediction for GeneMark_model.1225_t
Valid prediction for GlimmerHMM_glimmerT_986-T1
Valid prediction for CodingQuarry_transcript_2671-T1
Valid prediction for snap_scaffold_1-snap.1194-T1
Couldn't classify 108754, 109185
Sorry, prediction pasa_asmbl_1871.p2 fails validation.
(CCG)	 CC	108754-109185	GA	CCG
Valid prediction for snap_scaffold_1-snap.1218-T1
Valid prediction for HiQ_model.g724.t1
Valid prediction for HiQ_model.g729.t1
Valid prediction for GlimmerHMM_glimmerT_974-T1
Valid prediction for GlimmerHMM_glimmerT_985-T1
Valid prediction for snap_scaffold_1-snap.1205-T1
Valid prediction for snap_scaffold_1-snap.1215-T1
Valid prediction for GlimmerHMM_glimmerT_988-T1
Valid prediction for GeneMark_model.1197_t
Valid prediction for GeneMark_model.1195_t
Valid prediction for CodingQuarry_transcript_2673-T1
Valid prediction for CodingQuarry_transcript_2666-T1
Valid prediction for GlimmerHMM_glimmerT_997-T1
Valid prediction for GeneMark_model.1233_t
Valid prediction for GlimmerHMM_glimmerT_966-T1
Valid prediction for snap_scaffold_1-snap.1190-T1
Valid prediction for Augustus_model.g716.t1
Valid prediction for GeneMark_model.1210_t
Couldn't classify 100593, 100653
Couldn't classify 107694, 107776
Sorry, prediction pasa_asmbl_1870.p1 fails validation.
(GTA)	 AG	100593-100653	GT	CAG
(ACT)	 AG	101894-102019	GT	AGG
(GTA)	 AG	104858-104976	GT	TGG
(AGG)	 AG	105263-105383	GT	CTG
(CCT)	 AG	105623-105667	GT	ATG
(TCT)	 AG	105836-105987	GT	CTG
(GAA)	 AG	106927-106992	GT	AGG
(CTG)	 AG	107090-107144	GT	AGG
(TCC)	 AG	107372-107482	GT	AGG
(AGA)	 AG	107694-107776	AG	CCA
add_exon() Sorry, pasa_asmbl_1870.p1 101894-102019-terminal-1 is invalid.
-recovered pasa_asmbl_1870.p1, terminal, 101894, 102019
-recovered pasa_asmbl_1870.p1, internal, 100593, 100653
-recovered pasa_asmbl_1870.p1, internal, 101894, 102019
-recovered pasa_asmbl_1870.p1, internal, 104858, 104976
-recovered pasa_asmbl_1870.p1, internal, 105263, 105383
-recovered pasa_asmbl_1870.p1, internal, 105623, 105667
-recovered pasa_asmbl_1870.p1, internal, 105836, 105987
-recovered pasa_asmbl_1870.p1, internal, 106927, 106992
-recovered pasa_asmbl_1870.p1, internal, 107090, 107144
-recovered pasa_asmbl_1870.p1, internal, 107372, 107482
Valid prediction for snap_scaffold_1-snap.1201-T1
Valid prediction for GeneMark_model.1208_t
Valid prediction for GeneMark_model.1224_t
Valid prediction for snap_scaffold_1-snap.1203-T1
Valid prediction for Augustus_model.g723.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.1197-T1
Valid prediction for GeneMark_model.1200_t
Valid prediction for GlimmerHMM_glimmerT_987-T1
Valid prediction for Augustus_model.g715.t1
Couldn't classify 128913, 128948
Couldn't classify 141112, 141170
Sorry, prediction pasa_asmbl_413.p1 fails validation.
(GTC)	 GT	128913-128948	GT	AGG
(GTT)	 AG	131513-131575	GT	AGG
(GAA)	 AG	131961-132056	GT	AGG
(GCT)	 AG	132231-132302	GT	AAG
(AAC)	 AG	132610-132750	GT	AGG
(AGG)	 AG	132960-133097	GT	AGG
(CTG)	 AG	133248-133416	GT	AGG
(TGC)	 AG	133732-133782	GT	AGG
(CAG)	 AG	134504-134563	GT	CGG
(ACC)	 AG	135881-135943	GT	GCG
(CCG)	 AG	137729-137788	GT	CGG
(ATG)	 AG	139222-139296	GT	AGG
(AAA)	 AG	140351-140431	GT	AGG
(ACG)	 AG	141112-141170	GG	AAG
-recovered pasa_asmbl_413.p1, initial, 139222, 139296
add_exon() Sorry, pasa_asmbl_413.p1 133732-133782-terminal-1 is invalid.
-recovered pasa_asmbl_413.p1, terminal, 133732, 133782
-recovered pasa_asmbl_413.p1, internal, 131513, 131575
-recovered pasa_asmbl_413.p1, internal, 131961, 132056
-recovered pasa_asmbl_413.p1, internal, 132231, 132302
-recovered pasa_asmbl_413.p1, internal, 132610, 132750
-recovered pasa_asmbl_413.p1, internal, 132960, 133097
-recovered pasa_asmbl_413.p1, internal, 133248, 133416
-recovered pasa_asmbl_413.p1, internal, 133732, 133782
-recovered pasa_asmbl_413.p1, internal, 134504, 134563
-recovered pasa_asmbl_413.p1, internal, 135881, 135943
-recovered pasa_asmbl_413.p1, internal, 137729, 137788
-recovered pasa_asmbl_413.p1, internal, 139222, 139296
-recovered pasa_asmbl_413.p1, internal, 140351, 140431
Valid prediction for Augustus_model.g728.t1
Valid prediction for GeneMark_model.1216_t
Valid prediction for GlimmerHMM_glimmerT_978-T1
Couldn't classify 99032, 99133
Sorry, prediction pasa_asmbl_1291.p1 fails validation.
(GAA)	 GT	99032-99133	GT	AGG
(GTG)	 AG	99636-99714	GT	AGG
(GTG)	 AG	99915-100357	TT	GAT
-recovered pasa_asmbl_1291.p1, terminal, 99915, 100357
-recovered pasa_asmbl_1291.p1, internal, 99636, 99714
Valid prediction for snap_scaffold_1-snap.1199-T1
Valid prediction for GeneMark_model.1223_t
Valid prediction for GlimmerHMM_glimmerT_973-T1
Valid prediction for GeneMark_model.1232_t
Couldn't classify 146803, 146863
Sorry, prediction pasa_asmbl_411.p1 fails validation.
(AGG)	 GA	146803-146863	GT	GAG
(CCC)	 AG	147088-147393	GT	GGG
(ACG)	 AG	147644-147761	GT	AGG
(CTC)	 AG	149632-149803	GT	AGG
(TAC)	 AG	149916-150050	GT	ACG
(CCA)	 AG	151212-151295	AA	AGA
-recovered pasa_asmbl_411.p1, terminal, 151212, 151295
-recovered pasa_asmbl_411.p1, internal, 147088, 147393
-recovered pasa_asmbl_411.p1, internal, 147644, 147761
-recovered pasa_asmbl_411.p1, internal, 149632, 149803
-recovered pasa_asmbl_411.p1, internal, 149916, 150050
Valid prediction for GeneMark_model.1207_t
Valid prediction for HiQ_model.g720.t1
Valid prediction for Augustus_model.g714.t1
Valid prediction for CodingQuarry_transcript_2669-T1
Valid prediction for GeneMark_model.1229_t
Valid prediction for GlimmerHMM_glimmerT_981-T1
Valid prediction for GlimmerHMM_glimmerT_990-T1
Valid prediction for snap_scaffold_1-snap.1204-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GeneMark_model.1213_t
Valid prediction for snap_scaffold_1-snap.1200-T1
Valid prediction for snap_scaffold_1-snap.1210-T1
Valid prediction for snap_scaffold_1-snap.1216-T1
Valid prediction for GeneMark_model.1196_t
Valid prediction for Augustus_model.g726.t1
Valid prediction for GeneMark_model.1202_t
Valid prediction for snap_scaffold_1-snap.1188-T1
Valid prediction for GlimmerHMM_glimmerT_969-T1
Valid prediction for snap_scaffold_1-snap.1207-T1
Valid prediction for GeneMark_model.1234_t
Valid prediction for Augustus_model.g721.t1
Valid prediction for GeneMark_model.1204_t
Valid prediction for GeneMark_model.1227_t
Valid prediction for snap_scaffold_1-snap.1213-T1
Valid prediction for Augustus_model.g712.t1
Valid prediction for snap_scaffold_1-snap.1219-T1
Valid prediction for GlimmerHMM_glimmerT_992-T1
Valid prediction for GeneMark_model.1236_t
Valid prediction for GlimmerHMM_glimmerT_962-T1
Valid prediction for GlimmerHMM_glimmerT_965-T1
Valid prediction for GeneMark_model.1194_t
Valid prediction for snap_scaffold_1-snap.1208-T1
Valid prediction for pasa_asmbl_416.p1
Valid prediction for GlimmerHMM_glimmerT_989-T1
Valid prediction for GeneMark_model.1206_t
Valid prediction for GlimmerHMM_glimmerT_964-T1
Valid prediction for snap_scaffold_1-snap.1214-T1
Valid prediction for HiQ_model.g718.t1
Valid prediction for GlimmerHMM_glimmerT_995-T1
Valid prediction for GlimmerHMM_glimmerT_967-T1
Valid prediction for GeneMark_model.1221_t
Valid prediction for GeneMark_model.1231_t
Valid prediction for snap_scaffold_1-snap.1195-T1
Valid prediction for GlimmerHMM_glimmerT_971-T1
Valid prediction for GlimmerHMM_glimmerT_980-T1
Valid prediction for GlimmerHMM_glimmerT_970-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 83509, rend_intergenic: 83506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40785, rend_intergenic: 4730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51565, rend_intergenic: 45696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83509, rend_intergenic: 80401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100661, rend_intergenic: 91271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106213, rend_intergenic: 102085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108863, rend_intergenic: 106584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117436, rend_intergenic: 113797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125701, rend_intergenic: 122807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132311, rend_intergenic: 126182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144182, rend_intergenic: 143801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148826, rend_intergenic: 144490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 156250
-exon list size: 699


building trellis

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43.7    
43.8    
43.9    
44.1    
44.2    
44.4    
44.5    
44.7    
44.8    
44.9    
45.1    
45.2    
45.4    
45.5    
45.6    
45.8    
45.9    
46.1    
46.2    
46.4    
46.5    
46.6    
46.8    
46.9    
47.1    
47.2    
47.4    
47.5    
47.6    
47.8    
47.9    
48.1    
48.2    
48.4    
48.5    
48.6    
48.8    
48.9    
49.1    
49.2    
49.4    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.6    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.6    
51.8    
51.9    
52.1    
52.2    
52.4    
52.5    
52.6    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.6    
53.8    
53.9    
54.1    
54.2    
54.4    
54.5    
54.6    
54.8    
54.9    
55.1    
55.2    
55.3    
55.5    
55.6    
55.8    
55.9    
56.1    
56.2    
56.3    
56.5    
56.6    
56.8    
56.9    
57.1    
57.2    
57.3    
57.5    
57.6    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.3    
59.5    
59.6    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.8    
60.9    
61.1    
61.2    
61.3    
61.5    
61.6    
61.8    
61.9    
62.1    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.3    
63.5    
63.6    
63.8    
63.9    
64.1    
64.2    
64.3    
64.5    
64.6    
64.8    
64.9    
65.0    
65.2    
65.3    
65.5    
65.6    
65.8    
65.9    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.0    
67.2    
67.3    
67.5    
67.6    
67.8    
67.9    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.0    
69.2    
69.3    
69.5    
69.6    
69.8    
69.9    
70.0    
70.2    
70.3    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.5    
71.6    
71.8    
71.9    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.0    
73.2    
73.3    
73.5    
73.6    
73.8    
73.9    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
74.9    
75.0    
75.2    
75.3    
75.5    
75.6    
75.7    
75.9    
76.0    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.2    
77.3    
77.5    
77.6    
77.7    
77.9    
78.0    
78.2    
78.3    
78.5    
78.6    
78.7    
78.9    
79.0    
79.2    
79.3    
79.5    
79.6    
79.7    
79.9    
80.0    
80.2    
80.3    
80.5    
80.6    
80.7    
80.9    
81.0    
81.2    
81.3    
81.5    
81.6    
81.7    
81.9    
82.0    
82.2    
82.3    
82.5    
82.6    
82.7    
82.9    
83.0    
83.2    
83.3    
83.5    
83.6    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.2    
85.3    
85.4    
85.6    
85.7    
85.9    
86.0    
86.2    
86.3    
86.4    
86.6    
86.7    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.9    
88.0    
88.2    
88.3    
88.4    
88.6    
88.7    
88.9    
89.0    
89.2    
89.3    
89.4    
89.6    
89.7    
89.9    
90.0    
90.2    
90.3    
90.4    
90.6    
90.7    
90.9    
91.0    
91.2    
91.3    
91.4    
91.6    
91.7    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.9    
93.0    
93.2    
93.3    
93.4    
93.6    
93.7    
93.9    
94.0    
94.2    
94.3    
94.4    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.6    
96.7    
96.9    
97.0    
97.1    
97.3    
97.4    
97.6    
97.7    
97.9    
98.0    
98.1    
98.3    
98.4    
98.6    
98.7    
98.9    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 26 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 83509, rend_intergenic: 83506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40785, rend_intergenic: 4730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51565, rend_intergenic: 45696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83509, rend_intergenic: 80401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100661, rend_intergenic: 91271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106213, rend_intergenic: 102085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108863, rend_intergenic: 106584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117436, rend_intergenic: 113797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125701, rend_intergenic: 122807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132311, rend_intergenic: 126182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144182, rend_intergenic: 143801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148826, rend_intergenic: 144490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support