-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_6706678-6902260

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_954-T1
Valid prediction for GeneMark_model.1168_t
Valid prediction for GeneMark_model.1151_t
Valid prediction for GeneMark_model.1155_t
Valid prediction for GeneMark_model.1160_t
Valid prediction for GeneMark_model.1186_t
Valid prediction for GlimmerHMM_glimmerT_939-T1
Valid prediction for GlimmerHMM_glimmerT_937-T1
Valid prediction for GlimmerHMM_glimmerT_950-T1
Valid prediction for Augustus_model.g690.t1
Valid prediction for snap_scaffold_1-snap.1187-T1
Valid prediction for GlimmerHMM_glimmerT_948-T1
Valid prediction for GeneMark_model.1184_t
Valid prediction for Augustus_model.g689.t1
Valid prediction for GeneMark_model.1187_t
Valid prediction for snap_scaffold_1-snap.1166-T1
Valid prediction for snap_scaffold_1-snap.1148-T1
Valid prediction for GeneMark_model.1156_t
Valid prediction for Augustus_model.g692.t1
Valid prediction for GeneMark_model.1153_t
Valid prediction for snap_scaffold_1-snap.1170-T1
Valid prediction for GlimmerHMM_glimmerT_959-T1
Valid prediction for GeneMark_model.1166_t
Valid prediction for snap_scaffold_1-snap.1144-T1
Valid prediction for GeneMark_model.1180_t
Valid prediction for snap_scaffold_1-snap.1155-T1
Valid prediction for snap_scaffold_1-snap.1184-T1
Valid prediction for GlimmerHMM_glimmerT_942-T1
Valid prediction for GeneMark_model.1173_t
Valid prediction for Augustus_model.g694.t1
Valid prediction for Augustus_model.g699.t1
Valid prediction for GlimmerHMM_glimmerT_945-T1
Couldn't classify 43079, 43274
Sorry, prediction pasa_asmbl_1843.p1 fails validation.
(GTG)	 CA	43079-43274	GT	AGG
(CCA)	 AG	45151-45287	GT	AGG
(GAG)	 AG	45501-45671	GT	TGG
(GCC)	 AG	45815-46001	GT	GGG
(CTG)	 AG	46130-46263	GT	ATG
(TCC)	 AG	46647-46817	TG	GAT
-recovered pasa_asmbl_1843.p1, terminal, 46647, 46817
-recovered pasa_asmbl_1843.p1, internal, 45151, 45287
-recovered pasa_asmbl_1843.p1, internal, 45501, 45671
-recovered pasa_asmbl_1843.p1, internal, 45815, 46001
-recovered pasa_asmbl_1843.p1, internal, 46130, 46263
Valid prediction for snap_scaffold_1-snap.1147-T1
Valid prediction for snap_scaffold_1-snap.1159-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g710.t1
Valid prediction for Augustus_model.g698.t1
Valid prediction for snap_scaffold_1-snap.1183-T1
Valid prediction for Augustus_model.g707.t1
Valid prediction for GlimmerHMM_glimmerT_933-T1
Valid prediction for GeneMark_model.1162_t
Valid prediction for GeneMark_model.1170_t
Valid prediction for GlimmerHMM_glimmerT_935-T1
Valid prediction for snap_scaffold_1-snap.1178-T1
Valid prediction for GeneMark_model.1190_t
Valid prediction for Augustus_model.g693.t1
Valid prediction for snap_scaffold_1-snap.1163-T1
Valid prediction for snap_scaffold_1-snap.1154-T1
Couldn't classify 82493, 82606
Sorry, prediction pasa_asmbl_1849.p1 fails validation.
(TCC)	 AG	82493-82606	GT	AGG
(GAT)	 AG	82862-82962	GT	CGG
(ATC)	 AG	83155-83408	GT	CTG
(GCC)	 AG	83780-84096	GT	AGG
(GAG)	 AG	84972-85202	GT	AGG
(ATC)	 AG	85326-85541	TG	AAT
-recovered pasa_asmbl_1849.p1, terminal, 85326, 85541
-recovered pasa_asmbl_1849.p1, internal, 82493, 82606
-recovered pasa_asmbl_1849.p1, internal, 82862, 82962
-recovered pasa_asmbl_1849.p1, internal, 83155, 83408
-recovered pasa_asmbl_1849.p1, internal, 83780, 84096
-recovered pasa_asmbl_1849.p1, internal, 84972, 85202
Couldn't classify 131417, 131626
Couldn't classify 132420, 132506
Sorry, prediction pasa_asmbl_2737.p1 fails validation.
(GAA)	 AG	131417-131626	GT	ATG
(ATC)	 AG	132420-132506	AG	ACA
-recovered pasa_asmbl_2737.p1, internal, 131417, 131626
Valid prediction for Augustus_model.g695.t1
Valid prediction for GlimmerHMM_glimmerT_938-T1
Valid prediction for snap_scaffold_1-snap.1181-T1
Valid prediction for Augustus_model.g700.t1
Valid prediction for GlimmerHMM_glimmerT_947-T1
Couldn't classify 134113, 134227
Sorry, prediction pasa_asmbl_2689.p1 fails validation.
(AGG)	 AC	134113-134227	GT	AGG
(AGG)	 AG	134465-134577	GT	AGG
(AAC)	 AG	135072-135229	GT	AGG
(GGT)	 AG	135464-135560	GT	AGG
(GCA)	 AG	135889-135963	TG	GAT
add_exon() Sorry, pasa_asmbl_2689.p1 135072-135229-terminal-2 is invalid.
-recovered pasa_asmbl_2689.p1, terminal, 135072, 135229
-recovered pasa_asmbl_2689.p1, terminal, 135889, 135963
-recovered pasa_asmbl_2689.p1, internal, 134465, 134577
-recovered pasa_asmbl_2689.p1, internal, 135072, 135229
-recovered pasa_asmbl_2689.p1, internal, 135464, 135560
Valid prediction for GeneMark_model.1161_t
Valid prediction for GeneMark_model.1158_t
Valid prediction for GeneMark_model.1164_t
Valid prediction for GlimmerHMM_glimmerT_936-T1
Valid prediction for GeneMark_model.1189_t
Valid prediction for snap_scaffold_1-snap.1167-T1
Valid prediction for snap_scaffold_1-snap.1177-T1
Valid prediction for GeneMark_model.1175_t
Valid prediction for snap_scaffold_1-snap.1152-T1
Valid prediction for snap_scaffold_1-snap.1174-T1
Valid prediction for snap_scaffold_1-snap.1156-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.1169-T1
Valid prediction for Augustus_model.g702.t1
Valid prediction for snap_scaffold_1-snap.1164-T1
Couldn't classify 54818, 55038
Sorry, prediction pasa_asmbl_402.p1 fails validation.
(ATG)	 CT	53240-53471	GT	AGG
(ACA)	 AG	53514-53690	GT	AGG
(GTA)	 AG	54818-55038	AA	GTA
-recovered pasa_asmbl_402.p1, initial, 53240, 53471
-recovered pasa_asmbl_402.p1, internal, 53514, 53690
Valid prediction for snap_scaffold_1-snap.1150-T1
Valid prediction for GlimmerHMM_glimmerT_956-T1
Valid prediction for HiQ_model.g703.t1
Couldn't classify 25416, 25533
Couldn't classify 30067, 30173
Sorry, prediction pasa_asmbl_407.p1 fails validation.
(AGT)	 CC	25416-25533	GT	AGG
(GTA)	 AG	27740-27858	GT	AGG
(GTG)	 AG	27986-28060	GT	AGG
(GTG)	 AG	28154-28316	GT	AGG
(GGG)	 AG	28570-28767	GT	TGG
(CCT)	 AG	30067-30173	GG	GTG
-recovered pasa_asmbl_407.p1, internal, 27740, 27858
-recovered pasa_asmbl_407.p1, internal, 27986, 28060
-recovered pasa_asmbl_407.p1, internal, 28154, 28316
-recovered pasa_asmbl_407.p1, internal, 28570, 28767
Valid prediction for GlimmerHMM_glimmerT_932-T1
Valid prediction for GeneMark_model.1185_t
Valid prediction for pasa_asmbl_398.p1
Valid prediction for snap_scaffold_1-snap.1185-T1
Valid prediction for snap_scaffold_1-snap.1186-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.1192_t
Valid prediction for GeneMark_model.1188_t
Valid prediction for GlimmerHMM_glimmerT_961-T1
Valid prediction for GeneMark_model.1176_t
Valid prediction for GeneMark_model.1172_t
Valid prediction for snap_scaffold_1-snap.1162-T1
Valid prediction for snap_scaffold_1-snap.1172-T1
Couldn't classify 37786, 37855
Couldn't classify 54818, 55038
Sorry, prediction pasa_asmbl_400.p1 fails validation.
(AAG)	 CC	37786-37855	GT	AGG
(CCG)	 AG	38479-38652	GT	TGG
(GTC)	 AG	38797-38959	GT	AGG
(AGG)	 AG	39231-39391	GT	TGG
(GCA)	 AG	40223-40390	GT	AGG
(GTT)	 AG	40542-40665	GT	AGG
(CCC)	 AG	40773-40926	GT	CTG
(GAC)	 AG	41652-41841	GT	CGG
(GCC)	 AG	41922-42169	GT	TGG
(GTG)	 AG	44175-44277	GT	AGG
(GCG)	 AG	44486-44626	GT	TGG
(AGA)	 AG	46028-46156	GT	GGG
(GTG)	 AG	46304-46477	GT	TGG
(AAG)	 AG	47040-47198	GT	AGG
(GTA)	 AG	47533-47736	GT	AGG
(GGT)	 AG	48818-48970	GT	AGG
(GAA)	 AG	49120-49242	GT	TGG
(AGA)	 AG	51235-51501	GT	AGG
(CTG)	 AG	51588-51725	GT	TGG
(GTG)	 AG	51876-51991	GT	AGG
(GAG)	 AG	53339-53471	GT	AGG
(ACA)	 AG	53514-53690	GT	AGG
(GTA)	 AG	54818-55038	AA	GTA
add_exon() Sorry, pasa_asmbl_400.p1 47040-47198-terminal-1 is invalid.
-recovered pasa_asmbl_400.p1, terminal, 47040, 47198
-recovered pasa_asmbl_400.p1, internal, 38479, 38652
-recovered pasa_asmbl_400.p1, internal, 38797, 38959
-recovered pasa_asmbl_400.p1, internal, 39231, 39391
-recovered pasa_asmbl_400.p1, internal, 40223, 40390
-recovered pasa_asmbl_400.p1, internal, 40542, 40665
-recovered pasa_asmbl_400.p1, internal, 40773, 40926
-recovered pasa_asmbl_400.p1, internal, 41652, 41841
-recovered pasa_asmbl_400.p1, internal, 41922, 42169
-recovered pasa_asmbl_400.p1, internal, 44175, 44277
-recovered pasa_asmbl_400.p1, internal, 44486, 44626
-recovered pasa_asmbl_400.p1, internal, 46028, 46156
-recovered pasa_asmbl_400.p1, internal, 46304, 46477
-recovered pasa_asmbl_400.p1, internal, 47040, 47198
-recovered pasa_asmbl_400.p1, internal, 47533, 47736
-recovered pasa_asmbl_400.p1, internal, 48818, 48970
-recovered pasa_asmbl_400.p1, internal, 49120, 49242
-recovered pasa_asmbl_400.p1, internal, 51235, 51501
-recovered pasa_asmbl_400.p1, internal, 51588, 51725
-recovered pasa_asmbl_400.p1, internal, 51876, 51991
-recovered pasa_asmbl_400.p1, internal, 53339, 53471
-recovered pasa_asmbl_400.p1, internal, 53514, 53690
Valid prediction for GlimmerHMM_glimmerT_943-T1
Valid prediction for snap_scaffold_1-snap.1176-T1
Valid prediction for Augustus_model.g704.t1
Valid prediction for CodingQuarry_transcript_2661-T1
Valid prediction for GlimmerHMM_glimmerT_955-T1
Valid prediction for pasa_asmbl_387.p1
Valid prediction for GeneMark_model.1183_t
Valid prediction for CodingQuarry_transcript_2660-T1
Couldn't classify 36896, 37060
Couldn't classify 37252, 37428
Sorry, prediction pasa_asmbl_403.p1 fails validation.
(GCT)	 AG	36896-37060	GT	AGG
(GTG)	 AG	37252-37428	AC	CCA
-recovered pasa_asmbl_403.p1, internal, 36896, 37060
Valid prediction for snap_scaffold_1-snap.1149-T1
Valid prediction for Augustus_model.g696.t1
Valid prediction for snap_scaffold_1-snap.1175-T1
Valid prediction for GlimmerHMM_glimmerT_960-T1
Valid prediction for snap_scaffold_1-snap.1153-T1
Valid prediction for GeneMark_model.1181_t
Valid prediction for GeneMark_model.1163_t
Valid prediction for snap_scaffold_1-snap.1171-T1
Valid prediction for snap_scaffold_1-snap.1182-T1
Couldn't classify 182490, 182972
Sorry, prediction pasa_asmbl_1841.p1 fails validation.
(GCG)	 CC	182490-182972	GG	GAG
Valid prediction for snap_scaffold_1-snap.1158-T1
Valid prediction for GeneMark_model.1174_t
Valid prediction for snap_scaffold_1-snap.1180-T1
Valid prediction for snap_scaffold_1-snap.1146-T1
Valid prediction for snap_scaffold_1-snap.1160-T1
Valid prediction for GlimmerHMM_glimmerT_957-T1
Valid prediction for snap_scaffold_1-snap.1168-T1
Valid prediction for snap_scaffold_1-snap.1157-T1
Valid prediction for GeneMark_model.1178_t
Valid prediction for snap_scaffold_1-snap.1179-T1
Valid prediction for GeneMark_model.1169_t
Valid prediction for GlimmerHMM_glimmerT_952-T1
Valid prediction for GlimmerHMM_glimmerT_949-T1
Valid prediction for GlimmerHMM_glimmerT_953-T1
Valid prediction for GeneMark_model.1167_t
Valid prediction for GeneMark_model.1165_t
Valid prediction for GeneMark_model.1191_t
Valid prediction for snap_scaffold_1-snap.1161-T1
Valid prediction for HiQ_model.g706.t1
Valid prediction for snap_scaffold_1-snap.1145-T1
Valid prediction for GlimmerHMM_glimmerT_940-T1
Valid prediction for pasa_asmbl_390.p1
Valid prediction for GlimmerHMM_glimmerT_958-T1
Valid prediction for Augustus_model.g711.t1
Valid prediction for Augustus_model.g709.t1
Valid prediction for GeneMark_model.1154_t
Valid prediction for GlimmerHMM_glimmerT_951-T1
Valid prediction for snap_scaffold_1-snap.1165-T1
Couldn't classify 55214, 55385
Sorry, prediction pasa_asmbl_1372.p1 fails validation.
(GAG)	 CA	55214-55385	GT	TGG
(GTA)	 AG	55574-55761	TG	AAT
-recovered pasa_asmbl_1372.p1, terminal, 55574, 55761
Valid prediction for GeneMark_model.1152_t
Valid prediction for GeneMark_model.1157_t
Valid prediction for GlimmerHMM_glimmerT_934-T1
Valid prediction for snap_scaffold_1-snap.1151-T1
Valid prediction for CodingQuarry_transcript_2662-T1
Valid prediction for Augustus_model.g691.t1
Valid prediction for GeneMark_model.1159_t
Valid prediction for snap_scaffold_1-snap.1173-T1
Valid prediction for Augustus_model.g701.t1
Couldn't classify 54818, 55041
Sorry, prediction Augustus_model.g708.t1 fails validation.
(ATG)	 AG	23661-23760	GT	AGG
(ACA)	 AG	24408-24653	GT	AGG
(GTC)	 AG	24765-24862	GT	AGG
(GTG)	 AG	25386-25533	GT	AGG
(GTA)	 AG	27740-27858	GT	AGG
(GTG)	 AG	27986-28060	GT	AGG
(GTG)	 AG	28154-28316	GT	AGG
(GGG)	 AG	28570-28767	GT	TGG
(CCT)	 AG	30067-30204	GT	GAG
(AAG)	 AG	31286-31412	GT	AGG
(TCC)	 AG	32687-32823	GT	GGG
(GCT)	 AG	32962-33155	GT	AGG
(GTC)	 AG	33433-33546	GT	AGG
(AAT)	 AG	33663-33806	GT	GGG
(GTA)	 AG	35166-35289	GT	GGG
(GAG)	 AG	35638-35798	GT	AGG
(GAG)	 AG	35926-36016	GT	AGG
(GTG)	 AG	36179-36348	GT	AGG
(GGT)	 AG	36473-36590	GT	CAG
(GAG)	 AG	36798-37060	GT	AGG
(GTG)	 AG	37252-37855	GT	AGG
(CCG)	 AG	38479-38652	GT	TGG
(GTC)	 AG	38797-38959	GT	AGG
(AGG)	 AG	39231-39391	GT	TGG
(GCA)	 AG	40223-40390	GT	AGG
(GTT)	 AG	40542-40665	GT	AGG
(CCC)	 AG	40773-40926	GT	CTG
(GAC)	 AG	41652-41841	GT	CGG
(GCC)	 AG	41922-42169	GT	TGG
(GCG)	 AG	42360-42440	GT	GGG
(GGA)	 AG	43347-43484	GT	GCG
(GTG)	 AG	44175-44277	GT	AGG
(GCG)	 AG	44486-44626	GT	TGG
(AGA)	 AG	46028-46156	GT	GGG
(GTG)	 AG	46304-46477	GT	TGG
(AAG)	 AG	47040-47198	GT	AGG
(GTA)	 AG	47533-47736	GT	AGG
(GGT)	 AG	48818-48970	GT	AGG
(GAA)	 AG	49120-49242	GT	TGG
(TGA)	 AG	50776-50961	GT	GGG
(AGA)	 AG	51235-51501	GT	AGG
(CTG)	 AG	51588-51725	GT	TGG
(GTG)	 AG	51876-51991	GT	AGG
(GAG)	 AG	53339-53471	GT	AGG
(ACA)	 AG	53514-53690	GT	AGG
(GTA)	 AG	54818-55041	AA	AGA
-recovered Augustus_model.g708.t1, initial, 23661, 23760
add_exon() Sorry, Augustus_model.g708.t1 47040-47198-terminal-1 is invalid.
-recovered Augustus_model.g708.t1, terminal, 47040, 47198
-recovered Augustus_model.g708.t1, internal, 23661, 23760
-recovered Augustus_model.g708.t1, internal, 24408, 24653
-recovered Augustus_model.g708.t1, internal, 24765, 24862
-recovered Augustus_model.g708.t1, internal, 25386, 25533
-recovered Augustus_model.g708.t1, internal, 27740, 27858
-recovered Augustus_model.g708.t1, internal, 27986, 28060
-recovered Augustus_model.g708.t1, internal, 28154, 28316
-recovered Augustus_model.g708.t1, internal, 28570, 28767
-recovered Augustus_model.g708.t1, internal, 30067, 30204
-recovered Augustus_model.g708.t1, internal, 31286, 31412
-recovered Augustus_model.g708.t1, internal, 32687, 32823
-recovered Augustus_model.g708.t1, internal, 32962, 33155
-recovered Augustus_model.g708.t1, internal, 33433, 33546
-recovered Augustus_model.g708.t1, internal, 33663, 33806
-recovered Augustus_model.g708.t1, internal, 35166, 35289
-recovered Augustus_model.g708.t1, internal, 35638, 35798
-recovered Augustus_model.g708.t1, internal, 35926, 36016
-recovered Augustus_model.g708.t1, internal, 36179, 36348
-recovered Augustus_model.g708.t1, internal, 36473, 36590
-recovered Augustus_model.g708.t1, internal, 36798, 37060
-recovered Augustus_model.g708.t1, internal, 37252, 37855
-recovered Augustus_model.g708.t1, internal, 38479, 38652
-recovered Augustus_model.g708.t1, internal, 38797, 38959
-recovered Augustus_model.g708.t1, internal, 39231, 39391
-recovered Augustus_model.g708.t1, internal, 40223, 40390
-recovered Augustus_model.g708.t1, internal, 40542, 40665
-recovered Augustus_model.g708.t1, internal, 40773, 40926
-recovered Augustus_model.g708.t1, internal, 41652, 41841
-recovered Augustus_model.g708.t1, internal, 41922, 42169
-recovered Augustus_model.g708.t1, internal, 42360, 42440
-recovered Augustus_model.g708.t1, internal, 43347, 43484
-recovered Augustus_model.g708.t1, internal, 44175, 44277
-recovered Augustus_model.g708.t1, internal, 44486, 44626
-recovered Augustus_model.g708.t1, internal, 46028, 46156
-recovered Augustus_model.g708.t1, internal, 46304, 46477
-recovered Augustus_model.g708.t1, internal, 47040, 47198
-recovered Augustus_model.g708.t1, internal, 47533, 47736
-recovered Augustus_model.g708.t1, internal, 48818, 48970
-recovered Augustus_model.g708.t1, internal, 49120, 49242
-recovered Augustus_model.g708.t1, internal, 50776, 50961
-recovered Augustus_model.g708.t1, internal, 51235, 51501
-recovered Augustus_model.g708.t1, internal, 51588, 51725
-recovered Augustus_model.g708.t1, internal, 51876, 51991
-recovered Augustus_model.g708.t1, internal, 53339, 53471
-recovered Augustus_model.g708.t1, internal, 53514, 53690
Couldn't classify 35166, 35289
Couldn't classify 36179, 36339
Sorry, prediction pasa_asmbl_404.p1 fails validation.
(GTA)	 AG	35166-35289	GT	GGG
(GAG)	 AG	35638-35798	GT	AGG
(GAG)	 AG	35926-36016	GT	AGG
(GTG)	 AG	36179-36339	AT	CCA
-recovered pasa_asmbl_404.p1, internal, 35166, 35289
-recovered pasa_asmbl_404.p1, internal, 35638, 35798
-recovered pasa_asmbl_404.p1, internal, 35926, 36016
Valid prediction for GlimmerHMM_glimmerT_944-T1
Couldn't classify 31321, 31412
Couldn't classify 33663, 33707
Sorry, prediction pasa_asmbl_406.p1 fails validation.
(CTG)	 CT	31321-31412	GT	AGG
(TCC)	 AG	32687-32823	GT	GGG
(GCT)	 AG	32962-33155	GT	AGG
(GTC)	 AG	33433-33546	GT	AGG
(AAT)	 AG	33663-33707	GA	GGG
-recovered pasa_asmbl_406.p1, internal, 32687, 32823
-recovered pasa_asmbl_406.p1, internal, 32962, 33155
-recovered pasa_asmbl_406.p1, internal, 33433, 33546
Valid prediction for CodingQuarry_transcript_2664-T1
Valid prediction for GeneMark_model.1179_t
Valid prediction for Augustus_model.g705.t1
Valid prediction for Augustus_model.g697.t1
Valid prediction for pasa_asmbl_386.p1
Valid prediction for GlimmerHMM_glimmerT_941-T1
Valid prediction for GeneMark_model.1171_t
Valid prediction for GlimmerHMM_glimmerT_946-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14215, rend_intergenic: 7750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43945, rend_intergenic: 41980  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66285, rend_intergenic: 64105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72627, rend_intergenic: 66392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77953, rend_intergenic: 76565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85541, rend_intergenic: 79662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120835, rend_intergenic: 119258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152282, rend_intergenic: 151616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155393, rend_intergenic: 152296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179952, rend_intergenic: 163489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 195583
-exon list size: 722


building trellis

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-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 14215, rend_intergenic: 7750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43945, rend_intergenic: 41980  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66285, rend_intergenic: 64105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72627, rend_intergenic: 66392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77953, rend_intergenic: 76565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85541, rend_intergenic: 79662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120835, rend_intergenic: 119258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152282, rend_intergenic: 151616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155393, rend_intergenic: 152296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179952, rend_intergenic: 163489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support