-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_6059582-6185496

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1-snap.1026-T1
Valid prediction for GlimmerHMM_glimmerT_811-T1
Valid prediction for snap_scaffold_1-snap.1006-T1
Valid prediction for GlimmerHMM_glimmerT_807-T1
Valid prediction for snap_scaffold_1-snap.1029-T1
Valid prediction for snap_scaffold_1-snap.998-T1
Valid prediction for GlimmerHMM_glimmerT_804-T1
Valid prediction for snap_scaffold_1-snap.1003-T1
Valid prediction for GlimmerHMM_glimmerT_818-T1
Valid prediction for GeneMark_model.1001_t
Valid prediction for GeneMark_model.995_t
Valid prediction for GeneMark_model.1015_t
Valid prediction for GlimmerHMM_glimmerT_793-T1
Valid prediction for GlimmerHMM_glimmerT_819-T1
Valid prediction for GlimmerHMM_glimmerT_817-T1
Valid prediction for GeneMark_model.999_t
Valid prediction for snap_scaffold_1-snap.1001-T1
Valid prediction for GeneMark_model.1014_t
Valid prediction for Augustus_model.g612.t1
Valid prediction for Augustus_model.g611.t1
Valid prediction for GlimmerHMM_glimmerT_801-T1
Valid prediction for GeneMark_model.1012_t
Valid prediction for snap_scaffold_1-snap.1019-T1
Valid prediction for snap_scaffold_1-snap.1016-T1
Valid prediction for Augustus_model.g609.t1
Valid prediction for Augustus_model.g616.t1
Valid prediction for GeneMark_model.988_t
Valid prediction for GeneMark_model.1004_t
Valid prediction for GlimmerHMM_glimmerT_794-T1
Valid prediction for GeneMark_model.984_t
Valid prediction for snap_scaffold_1-snap.1004-T1
Valid prediction for snap_scaffold_1-snap.1025-T1
Valid prediction for GeneMark_model.993_t
Valid prediction for snap_scaffold_1-snap.1008-T1
Valid prediction for GeneMark_model.991_t
Valid prediction for snap_scaffold_1-snap.1005-T1
Valid prediction for GeneMark_model.1007_t
Valid prediction for GlimmerHMM_glimmerT_822-T1
Valid prediction for snap_scaffold_1-snap.1030-T1
Valid prediction for GeneMark_model.986_t
Valid prediction for GlimmerHMM_glimmerT_792-T1
Valid prediction for GlimmerHMM_glimmerT_800-T1
Valid prediction for GlimmerHMM_glimmerT_797-T1
Valid prediction for GeneMark_model.997_t
Valid prediction for GeneMark_model.1000_t
Valid prediction for GlimmerHMM_glimmerT_816-T1
Valid prediction for snap_scaffold_1-snap.1002-T1
Valid prediction for Augustus_model.g605.t1
Valid prediction for GeneMark_model.987_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.985_t
Valid prediction for GeneMark_model.996_t
Valid prediction for snap_scaffold_1-snap.1012-T1
Valid prediction for snap_scaffold_1-snap.1014-T1
Valid prediction for GlimmerHMM_glimmerT_808-T1
Valid prediction for GeneMark_model.1008_t
Valid prediction for Augustus_model.g604.t1
Valid prediction for GeneMark_model.992_t
Valid prediction for GlimmerHMM_glimmerT_821-T1
Valid prediction for snap_scaffold_1-snap.1023-T1
Valid prediction for GeneMark_model.1002_t
Valid prediction for snap_scaffold_1-snap.1022-T1
Valid prediction for snap_scaffold_1-snap.1007-T1
Valid prediction for snap_scaffold_1-snap.1018-T1
Valid prediction for GeneMark_model.1010_t
Valid prediction for snap_scaffold_1-snap.1000-T1
Valid prediction for GlimmerHMM_glimmerT_815-T1
Valid prediction for snap_scaffold_1-snap.1021-T1
Valid prediction for Augustus_model.g618.t1
Valid prediction for GlimmerHMM_glimmerT_809-T1
Valid prediction for Augustus_model.g608.t1
Valid prediction for Augustus_model.g617.t1
Valid prediction for pasa_asmbl_325.p1
Valid prediction for snap_scaffold_1-snap.999-T1
Valid prediction for GeneMark_model.1013_t
Valid prediction for snap_scaffold_1-snap.1013-T1
Valid prediction for GeneMark_model.990_t
Valid prediction for GlimmerHMM_glimmerT_803-T1
Valid prediction for Augustus_model.g606.t1
Valid prediction for GlimmerHMM_glimmerT_814-T1
Valid prediction for snap_scaffold_1-snap.1028-T1
Valid prediction for GlimmerHMM_glimmerT_798-T1
Valid prediction for Augustus_model.g615.t1
Valid prediction for GeneMark_model.1005_t
Valid prediction for snap_scaffold_1-snap.1017-T1
Valid prediction for GlimmerHMM_glimmerT_806-T1
Valid prediction for GlimmerHMM_glimmerT_796-T1
Valid prediction for GeneMark_model.989_t
Valid prediction for snap_scaffold_1-snap.1015-T1
Valid prediction for Augustus_model.g613.t1
Valid prediction for GlimmerHMM_glimmerT_799-T1
Valid prediction for GlimmerHMM_glimmerT_802-T1
Valid prediction for GeneMark_model.994_t
Valid prediction for GeneMark_model.998_t
Valid prediction for GlimmerHMM_glimmerT_813-T1
Valid prediction for GlimmerHMM_glimmerT_795-T1
Valid prediction for snap_scaffold_1-snap.1010-T1
Valid prediction for snap_scaffold_1-snap.1027-T1
Valid prediction for GeneMark_model.1009_t
Couldn't classify 52495, 52575
Sorry, prediction pasa_asmbl_326.p1 fails validation.
(ATG)	 AC	50297-50343	GT	CGG
(TGG)	 AG	50768-52376	GT	AGG
(GAT)	 AG	52495-52575	AT	CAA
-recovered pasa_asmbl_326.p1, initial, 50297, 50343
-recovered pasa_asmbl_326.p1, internal, 50768, 52376
Valid prediction for Augustus_model.g603.t1
Valid prediction for GeneMark_model.1006_t
Valid prediction for GlimmerHMM_glimmerT_810-T1
Valid prediction for snap_scaffold_1-snap.1011-T1
Valid prediction for GlimmerHMM_glimmerT_805-T1
Valid prediction for snap_scaffold_1-snap.1024-T1
Valid prediction for snap_scaffold_1-snap.1020-T1
Valid prediction for HiQ_model.g614.t1
Valid prediction for GlimmerHMM_glimmerT_812-T1
Valid prediction for snap_scaffold_1-snap.1009-T1
Valid prediction for Augustus_model.g607.t1
Valid prediction for Augustus_model.g610.t1
Valid prediction for GlimmerHMM_glimmerT_820-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6533, rend_intergenic: 4260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32669, rend_intergenic: 26318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 125915
-exon list size: 447


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
1.3    
1.6    
1.8    
2.0    
2.2    
2.4    
2.7    
2.9    
3.1    
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3.6    
3.8    
4.0    
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4.5    
4.7    
4.9    
5.1    
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5.6    
5.8    
6.0    
6.2    
6.5    
6.7    
6.9    
7.1    
7.3    
7.6    
7.8    
8.0    
8.2    
8.5    
8.7    
8.9    
9.1    
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9.6    
9.8    
10.0    
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10.5    
10.7    
10.9    
11.1    
11.4    
11.6    
11.8    
12.0    
12.2    
12.5    
12.7    
12.9    
13.1    
13.4    
13.6    
13.8    
14.0    
14.3    
14.5    
14.7    
14.9    
15.1    
15.4    
15.6    
15.8    
16.0    
16.3    
16.5    
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16.9    
17.1    
17.4    
17.6    
17.8    
18.0    
18.3    
18.5    
18.7    
18.9    
19.2    
19.4    
19.6    
19.8    
20.0    
20.3    
20.5    
20.7    
20.9    
21.2    
21.4    
21.6    
21.8    
22.0    
22.3    
22.5    
22.7    
22.9    
23.2    
23.4    
23.6    
23.8    
24.1    
24.3    
24.5    
24.7    
24.9    
25.2    
25.4    
25.6    
25.8    
26.1    
26.3    
26.5    
26.7    
26.9    
27.2    
27.4    
27.6    
27.8    
28.1    
28.3    
28.5    
28.7    
29.0    
29.2    
29.4    
29.6    
29.8    
30.1    
30.3    
30.5    
30.7    
31.0    
31.2    
31.4    
31.6    
31.8    
32.1    
32.3    
32.5    
32.7    
33.0    
33.2    
33.4    
33.6    
33.9    
34.1    
34.3    
34.5    
34.7    
35.0    
35.2    
35.4    
35.6    
35.9    
36.1    
36.3    
36.5    
36.7    
37.0    
37.2    
37.4    
37.6    
37.9    
38.1    
38.3    
38.5    
38.8    
39.0    
39.2    
39.4    
39.6    
39.9    
40.1    
40.3    
40.5    
40.8    
41.0    
41.2    
41.4    
41.6    
41.9    
42.1    
42.3    
42.5    
42.8    
43.0    
43.2    
43.4    
43.7    
43.9    
44.1    
44.3    
44.5    
44.8    
45.0    
45.2    
45.4    
45.7    
45.9    
46.1    
46.3    
46.5    
46.8    
47.0    
47.2    
47.4    
47.7    
47.9    
48.1    
48.3    
48.6    
48.8    
49.0    
49.2    
49.4    
49.7    
49.9    
50.1    
50.3    
50.6    
50.8    
51.0    
51.2    
51.4    
51.7    
51.9    
52.1    
52.3    
52.6    
52.8    
53.0    
53.2    
53.5    
53.7    
53.9    
54.1    
54.3    
54.6    
54.8    
55.0    
55.2    
55.5    
55.7    
55.9    
56.1    
56.3    
56.6    
56.8    
57.0    
57.2    
57.5    
57.7    
57.9    
58.1    
58.4    
58.6    
58.8    
59.0    
59.2    
59.5    
59.7    
59.9    
60.1    
60.4    
60.6    
60.8    
61.0    
61.2    
61.5    
61.7    
61.9    
62.1    
62.4    
62.6    
62.8    
63.0    
63.3    
63.5    
63.7    
63.9    
64.1    
64.4    
64.6    
64.8    
65.0    
65.3    
65.5    
65.7    
65.9    
66.1    
66.4    
66.6    
66.8    
67.0    
67.3    
67.5    
67.7    
67.9    
68.2    
68.4    
68.6    
68.8    
69.0    
69.3    
69.5    
69.7    
69.9    
70.2    
70.4    
70.6    
70.8    
71.0    
71.3    
71.5    
71.7    
71.9    
72.2    
72.4    
72.6    
72.8    
73.1    
73.3    
73.5    
73.7    
73.9    
74.2    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.7    
75.9    
76.2    
76.4    
76.6    
76.8    
77.1    
77.3    
77.5    
77.7    
78.0    
78.2    
78.4    
78.6    
78.8    
79.1    
79.3    
79.5    
79.7    
80.0    
80.2    
80.4    
80.6    
80.8    
81.1    
81.3    
81.5    
81.7    
82.0    
82.2    
82.4    
82.6    
82.9    
83.1    
83.3    
83.5    
83.7    
84.0    
84.2    
84.4    
84.6    
84.9    
85.1    
85.3    
85.5    
85.7    
86.0    
86.2    
86.4    
86.6    
86.9    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.4    
88.6    
88.9    
89.1    
89.3    
89.5    
89.8    
90.0    
90.2    
90.4    
90.6    
90.9    
91.1    
91.3    
91.5    
91.8    
92.0    
92.2    
92.4    
92.7    
92.9    
93.1    
93.3    
93.5    
93.8    
94.0    
94.2    
94.4    
94.7    
94.9    
95.1    
95.3    
95.5    
95.8    
96.0    
96.2    
96.4    
96.7    
96.9    
97.1    
97.3    
97.6    
97.8    
98.0    
98.2    
98.4    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 6533, rend_intergenic: 4260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32669, rend_intergenic: 26318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support