-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_5659663-5861279 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g543.t1 Valid prediction for CodingQuarry_transcript_2623-T1 Valid prediction for CodingQuarry_transcript_2615-T1 Couldn't classify 60861, 60994 Sorry, prediction pasa_asmbl_1755.p1 fails validation. (CAG) CC 60861-60994 GT TGG (GCA) AG 61134-61317 AG GAA -recovered pasa_asmbl_1755.p1, terminal, 61134, 61317 Valid prediction for Augustus_model.g565.t1 Valid prediction for GeneMark_model.922_t Valid prediction for snap_scaffold_1-snap.909-T1 Valid prediction for HiQ_model.g550.t1 Valid prediction for GeneMark_model.905_t Valid prediction for GlimmerHMM_glimmerT_747-T1 Couldn't classify 99421, 99515 Sorry, prediction pasa_asmbl_1781.p1 fails validation. (ATG) AA 97243-97561 GT CAG (ATT) AG 99421-99515 GA TGG -recovered pasa_asmbl_1781.p1, initial, 97243, 97561 Valid prediction for pasa_asmbl_1758.p1 Valid prediction for GeneMark_model.912_t Valid prediction for Augustus_model.g558.t1 Valid prediction for snap_scaffold_1-snap.925-T1 Valid prediction for snap_scaffold_1-snap.918-T1 Valid prediction for snap_scaffold_1-snap.922-T1 Valid prediction for GeneMark_model.919_t Valid prediction for GeneMark_model.917_t Valid prediction for snap_scaffold_1-snap.903-T1 Valid prediction for snap_scaffold_1-snap.915-T1 Valid prediction for GlimmerHMM_glimmerT_731-T1 Couldn't classify 6691, 6759 Couldn't classify 6897, 8465 Sorry, prediction pasa_asmbl_1738.p1 fails validation. (ATG) GG 5505-5631 GT TGG (GAG) AG 5734-5796 GT ATG (GTG) AG 5871-5949 GT AGG (ACT) AG 6407-6557 GT AGG (GAT) AG 6691-6759 AT ATA (ATG) AC 6897-8465 GT TGG (GAT) AG 8578-8766 GT AGG (AAA) AG 8886-8996 GT AGG (CTC) AG 9084-9174 GT AGG (AGA) AG 9268-9403 GT AGG (AGA) AG 9605-9682 GT AGG (TAA) AG 9849-10171 GT AGG (AAT) AG 10313-10454 GT AGG (GGA) AG 10588-10649 GT AGG (AGG) AG 10861-10943 GT AGG (GAC) AG 11069-11137 GA GAG -recovered pasa_asmbl_1738.p1, initial, 5505, 5631 -recovered pasa_asmbl_1738.p1, initial, 6897, 8465 add_exon() Sorry, pasa_asmbl_1738.p1 10588-10649-terminal-2 is invalid. -recovered pasa_asmbl_1738.p1, terminal, 10588, 10649 -recovered pasa_asmbl_1738.p1, terminal, 11069, 11137 -recovered pasa_asmbl_1738.p1, internal, 5734, 5796 -recovered pasa_asmbl_1738.p1, internal, 5871, 5949 -recovered pasa_asmbl_1738.p1, internal, 6407, 6557 -recovered pasa_asmbl_1738.p1, internal, 8578, 8766 -recovered pasa_asmbl_1738.p1, internal, 8886, 8996 -recovered pasa_asmbl_1738.p1, internal, 9084, 9174 -recovered pasa_asmbl_1738.p1, internal, 9268, 9403 -recovered pasa_asmbl_1738.p1, internal, 9605, 9682 -recovered pasa_asmbl_1738.p1, internal, 9849, 10171 -recovered pasa_asmbl_1738.p1, internal, 10313, 10454 -recovered pasa_asmbl_1738.p1, internal, 10588, 10649 -recovered pasa_asmbl_1738.p1, internal, 10861, 10943 Valid prediction for Augustus_model.g566.t1 Valid prediction for GlimmerHMM_glimmerT_715-T1 Valid prediction for GlimmerHMM_glimmerT_724-T1 Valid prediction for GeneMark_model.925_t Valid prediction for GeneMark_model.910_t Valid prediction for GlimmerHMM_glimmerT_717-T1 Valid prediction for GlimmerHMM_glimmerT_741-T1 Valid prediction for GlimmerHMM_glimmerT_726-T1 Valid prediction for GlimmerHMM_glimmerT_737-T1 Valid prediction for snap_scaffold_1-snap.921-T1 Valid prediction for CodingQuarry_transcript_2624-T1 Valid prediction for snap_scaffold_1-snap.942-T1 Valid prediction for snap_scaffold_1-snap.920-T1 Valid prediction for CodingQuarry_transcript_2618-T1 Couldn't classify 24825, 25058 Sorry, prediction pasa_asmbl_1743.p1 fails validation. (TTC) TT 24825-25058 GT AGG (GTC) AG 25282-25432 GT ATG (CAG) AG 25691-25819 GT GGG (GGT) AG 26165-26326 GT AGG (GGA) AG 26438-27090 CT GAC -recovered pasa_asmbl_1743.p1, terminal, 26438, 27090 -recovered pasa_asmbl_1743.p1, internal, 25282, 25432 -recovered pasa_asmbl_1743.p1, internal, 25691, 25819 -recovered pasa_asmbl_1743.p1, internal, 26165, 26326 Valid prediction for GeneMark_model.903_t Valid prediction for GlimmerHMM_glimmerT_735-T1 Valid prediction for GlimmerHMM_glimmerT_729-T1 Valid prediction for Augustus_model.g545.t1 Valid prediction for GlimmerHMM_glimmerT_727-T1 Couldn't classify 55964, 56266 Sorry, prediction pasa_asmbl_2745.p1 fails validation. (CCT) CA 55964-56266 CA ACC Valid prediction for HiQ_model.g554.t1 Valid prediction for snap_scaffold_1-snap.936-T1 Valid prediction for GlimmerHMM_glimmerT_730-T1 Valid prediction for Augustus_model.g551.t1 Valid prediction for pasa_asmbl_2733.p1 Valid prediction for snap_scaffold_1-snap.908-T1 Valid prediction for CodingQuarry_transcript_2621-T1 Valid prediction for snap_scaffold_1-snap.937-T1 Valid prediction for GlimmerHMM_glimmerT_723-T1 Valid prediction for GlimmerHMM_glimmerT_716-T1 Valid prediction for HiQ_model.g552.t1 Valid prediction for GeneMark_model.914_t Valid prediction for snap_scaffold_1-snap.919-T1 Valid prediction for CodingQuarry_transcript_2620-T1 Valid prediction for GeneMark_model.934_t Valid prediction for GeneMark_model.923_t Valid prediction for snap_scaffold_1-snap.906-T1 Valid prediction for snap_scaffold_1-snap.904-T1 Couldn't classify 23383, 23437 Sorry, prediction pasa_asmbl_1739.p1 fails validation. (ATG) AC 17576-17650 GT CCG (GTG) AG 18227-18310 GT AAG (CTG) AG 18447-18629 GT ATG (GAA) AG 18967-19015 GT AGG (GAG) AG 19265-19428 GT AGG (ATA) AG 19517-19612 GT AGG (ATA) AG 19718-19813 GT TGG (GAC) AG 20015-20167 GT TGG (AAA) AG 20314-20382 GT AAG (CAC) AG 20806-20991 GT AGG (CTG) AG 21134-21262 GT AGG (GTA) AG 21485-21598 GT AGG (AGC) AG 22254-22365 GT AGG (CAG) AG 22946-23061 GT AGG (CTA) AG 23153-23214 GT AGG (CTG) AG 23383-23437 GT CGG -recovered pasa_asmbl_1739.p1, initial, 17576, 17650 -recovered pasa_asmbl_1739.p1, internal, 18227, 18310 -recovered pasa_asmbl_1739.p1, internal, 18447, 18629 -recovered pasa_asmbl_1739.p1, internal, 18967, 19015 -recovered pasa_asmbl_1739.p1, internal, 19265, 19428 -recovered pasa_asmbl_1739.p1, internal, 19517, 19612 -recovered pasa_asmbl_1739.p1, internal, 19718, 19813 -recovered pasa_asmbl_1739.p1, internal, 20015, 20167 -recovered pasa_asmbl_1739.p1, internal, 20314, 20382 -recovered pasa_asmbl_1739.p1, internal, 20806, 20991 -recovered pasa_asmbl_1739.p1, internal, 21134, 21262 -recovered pasa_asmbl_1739.p1, internal, 21485, 21598 -recovered pasa_asmbl_1739.p1, internal, 22254, 22365 -recovered pasa_asmbl_1739.p1, internal, 22946, 23061 -recovered pasa_asmbl_1739.p1, internal, 23153, 23214 -recovered pasa_asmbl_1739.p1, internal, 23383, 23437 Valid prediction for pasa_asmbl_1784.p1 Valid prediction for pasa_asmbl_1773.p1 Valid prediction for GeneMark_model.911_t Valid prediction for pasa_asmbl_1764.p1 Valid prediction for GlimmerHMM_glimmerT_742-T1 Couldn't classify 40278, 40419 Couldn't classify 43000, 43098 Sorry, prediction pasa_asmbl_1746.p1 fails validation. (GAG) GA 40278-40419 GT AGG (AGT) AG 40710-40805 GT GGG (AAA) AG 40942-40987 GT AAG (CTG) AG 41067-41146 GT AAG (AGA) AG 41309-41434 GT AGG (AGA) AG 41740-41813 GT TAG (GTG) AG 42223-42294 GT CTG (AAA) AG 42409-42528 GT CGG (GAA) AG 42671-42718 GT CCG (ATT) AG 42797-42871 GT AGG (ATA) AG 43000-43098 AA GCA -recovered pasa_asmbl_1746.p1, terminal, 41309, 41434 -recovered pasa_asmbl_1746.p1, internal, 40710, 40805 -recovered pasa_asmbl_1746.p1, internal, 40942, 40987 -recovered pasa_asmbl_1746.p1, internal, 41067, 41146 -recovered pasa_asmbl_1746.p1, internal, 41309, 41434 -recovered pasa_asmbl_1746.p1, internal, 41740, 41813 -recovered pasa_asmbl_1746.p1, internal, 42223, 42294 -recovered pasa_asmbl_1746.p1, internal, 42409, 42528 -recovered pasa_asmbl_1746.p1, internal, 42671, 42718 -recovered pasa_asmbl_1746.p1, internal, 42797, 42871 Valid prediction for GeneMark_model.901_t Valid prediction for snap_scaffold_1-snap.939-T1 Valid prediction for GlimmerHMM_glimmerT_746-T1 Valid prediction for GlimmerHMM_glimmerT_744-T1 Valid prediction for CodingQuarry_transcript_2617-T1 Valid prediction for snap_scaffold_1-snap.924-T1 Couldn't classify 92952, 92981 Sorry, prediction pasa_asmbl_1780.p1 fails validation. (GAC) TG 92952-92981 GT AGG (GAA) AG 93150-93238 GT AGG (TGT) AG 93481-93575 GT AGG (GCA) AG 93711-93883 GT AGG (CTC) AG 94399-94524 GT AGG (ATT) AG 94839-94960 GT AGG (GTT) AG 95132-95257 GT AGG (AGA) AG 95439-95541 AC AGA -recovered pasa_asmbl_1780.p1, terminal, 95439, 95541 -recovered pasa_asmbl_1780.p1, internal, 93150, 93238 -recovered pasa_asmbl_1780.p1, internal, 93481, 93575 -recovered pasa_asmbl_1780.p1, internal, 93711, 93883 -recovered pasa_asmbl_1780.p1, internal, 94399, 94524 -recovered pasa_asmbl_1780.p1, internal, 94839, 94960 -recovered pasa_asmbl_1780.p1, internal, 95132, 95257 Valid prediction for GeneMark_model.902_t Valid prediction for GeneMark_model.909_t Valid prediction for pasa_asmbl_1776.p1 Valid prediction for Augustus_model.g556.t1 Couldn't classify 23537, 24316 Sorry, prediction pasa_asmbl_1740.p1 fails validation. (GAG) AG 23537-24316 CT TAC Valid prediction for pasa_asmbl_1783.p1 Valid prediction for snap_scaffold_1-snap.914-T1 Valid prediction for GeneMark_model.927_t Valid prediction for GlimmerHMM_glimmerT_719-T1 Valid prediction for HiQ_model.g544.t1 Valid prediction for GlimmerHMM_glimmerT_728-T1 Valid prediction for snap_scaffold_1-snap.911-T1 Valid prediction for GeneMark_model.915_t Couldn't classify 44090, 44104 Sorry, prediction pasa_asmbl_1747.p1 fails validation. (GTC) TC 44090-44104 GT GGG (CTT) AG 44216-44305 GT TGG (GGC) AG 44476-44622 GT ATG (GGC) AG 44750-44806 GT TGG (GGC) AG 44921-45128 GT AGG (TCT) AG 45237-45386 GT AGG (GGT) AG 45612-45716 GT GGG (AAG) AG 45874-45981 GT CGG (CTC) AG 46079-46272 GT CTG (AAT) AG 46812-46956 GT CGG (GTA) AG 47086-47219 GT AGG (CTT) AG 47338-47503 GT AGG (ATG) AG 47578-47684 GT AAG (ATG) AG 47871-47987 GT AGG (ACA) AG 48070-48210 GT AGG (GAT) AG 48357-48470 GT TAG (GTG) AG 48569-48715 GT GGG (AAT) AG 48812-48913 GT GTG (GAC) AG 49098-49148 CG AGC add_exon() Sorry, pasa_asmbl_1747.p1 47578-47684-initial-1 is invalid. -recovered pasa_asmbl_1747.p1, initial, 47578, 47684 -recovered pasa_asmbl_1747.p1, initial, 47871, 47987 -recovered pasa_asmbl_1747.p1, terminal, 49098, 49148 -recovered pasa_asmbl_1747.p1, internal, 44216, 44305 -recovered pasa_asmbl_1747.p1, internal, 44476, 44622 -recovered pasa_asmbl_1747.p1, internal, 44750, 44806 -recovered pasa_asmbl_1747.p1, internal, 44921, 45128 -recovered pasa_asmbl_1747.p1, internal, 45237, 45386 -recovered pasa_asmbl_1747.p1, internal, 45612, 45716 -recovered pasa_asmbl_1747.p1, internal, 45874, 45981 -recovered pasa_asmbl_1747.p1, internal, 46079, 46272 -recovered pasa_asmbl_1747.p1, internal, 46812, 46956 -recovered pasa_asmbl_1747.p1, internal, 47086, 47219 -recovered pasa_asmbl_1747.p1, internal, 47338, 47503 -recovered pasa_asmbl_1747.p1, internal, 47578, 47684 -recovered pasa_asmbl_1747.p1, internal, 47871, 47987 -recovered pasa_asmbl_1747.p1, internal, 48070, 48210 -recovered pasa_asmbl_1747.p1, internal, 48357, 48470 -recovered pasa_asmbl_1747.p1, internal, 48569, 48715 -recovered pasa_asmbl_1747.p1, internal, 48812, 48913 Valid prediction for GlimmerHMM_glimmerT_713-T1 Valid prediction for Augustus_model.g568.t1 Valid prediction for pasa_asmbl_1772.p1 Valid prediction for snap_scaffold_1-snap.923-T1 Valid prediction for GlimmerHMM_glimmerT_740-T1 Valid prediction for GlimmerHMM_glimmerT_732-T1 Valid prediction for GlimmerHMM_glimmerT_751-T1 Valid prediction for CodingQuarry_transcript_2622-T1 Valid prediction for snap_scaffold_1-snap.933-T1 Valid prediction for snap_scaffold_1-snap.926-T1 Valid prediction for HiQ_model.g557.t1 Valid prediction for snap_scaffold_1-snap.929-T1 Valid prediction for GeneMark_model.937_t Couldn't classify 57317, 57351 Couldn't classify 58207, 58425 Sorry, prediction pasa_asmbl_1752.p1 fails validation. (CCT) TG 57317-57351 GT AGG (GCT) AG 57490-57646 GT AGG (AGG) AG 57740-57871 GT AGG (ATG) AG 57979-58107 GT AGG (GTA) AG 58207-58425 CA GGC -recovered pasa_asmbl_1752.p1, initial, 57979, 58107 -recovered pasa_asmbl_1752.p1, internal, 57490, 57646 -recovered pasa_asmbl_1752.p1, internal, 57740, 57871 -recovered pasa_asmbl_1752.p1, internal, 57979, 58107 Valid prediction for GeneMark_model.929_t Valid prediction for HiQ_model.g559.t1 Valid prediction for snap_scaffold_1-snap.930-T1 Valid prediction for GeneMark_model.906_t Valid prediction for snap_scaffold_1-snap.947-T1 Valid prediction for GeneMark_model.932_t Valid prediction for Augustus_model.g560.t1 Valid prediction for Augustus_model.g561.t1 Valid prediction for Augustus_model.g547.t1 Couldn't classify 114630, 115291 Sorry, prediction pasa_asmbl_1787.p2 fails validation. (ATG) AT 114312-114315 GT GGG (GTA) AG 114630-115291 GG CTG -recovered pasa_asmbl_1787.p2, initial, 114312, 114315 Valid prediction for GlimmerHMM_glimmerT_725-T1 Valid prediction for snap_scaffold_1-snap.907-T1 Valid prediction for snap_scaffold_1-snap.916-T1 Valid prediction for Augustus_model.g555.t1 Couldn't classify 6691, 6759 Couldn't classify 6897, 8465 Sorry, prediction CodingQuarry_transcript_2614-T1 fails validation. (ATG) GG 5505-5631 GT TGG (GAG) AG 5734-5796 GT ATG (GTG) AG 5871-5949 GT AGG (ACT) AG 6407-6557 GT AGG (GAT) AG 6691-6759 AT ATA (ATG) AC 6897-8465 GT TGG (GAT) AG 8578-8766 GT AGG (AAA) AG 8886-8996 GT AGG (CTC) AG 9084-9174 GT AGG (AGA) AG 9268-9403 GT AGG (AGA) AG 9605-9682 GT AGG (TAA) AG 9849-10171 GT AGG (AAT) AG 10313-10454 GT AGG (GGA) AG 10588-10649 GT AGG (AGG) AG 10861-10943 GT AGG (GAC) AG 11069-11137 GA GAG -recovered CodingQuarry_transcript_2614-T1, initial, 5505, 5631 -recovered CodingQuarry_transcript_2614-T1, initial, 6897, 8465 add_exon() Sorry, CodingQuarry_transcript_2614-T1 10588-10649-terminal-2 is invalid. -recovered CodingQuarry_transcript_2614-T1, terminal, 10588, 10649 -recovered CodingQuarry_transcript_2614-T1, terminal, 11069, 11137 -recovered CodingQuarry_transcript_2614-T1, internal, 5734, 5796 -recovered CodingQuarry_transcript_2614-T1, internal, 5871, 5949 -recovered CodingQuarry_transcript_2614-T1, internal, 6407, 6557 -recovered CodingQuarry_transcript_2614-T1, internal, 8578, 8766 -recovered CodingQuarry_transcript_2614-T1, internal, 8886, 8996 -recovered CodingQuarry_transcript_2614-T1, internal, 9084, 9174 -recovered CodingQuarry_transcript_2614-T1, internal, 9268, 9403 -recovered CodingQuarry_transcript_2614-T1, internal, 9605, 9682 -recovered CodingQuarry_transcript_2614-T1, internal, 9849, 10171 -recovered CodingQuarry_transcript_2614-T1, internal, 10313, 10454 -recovered CodingQuarry_transcript_2614-T1, internal, 10588, 10649 -recovered CodingQuarry_transcript_2614-T1, internal, 10861, 10943 Valid prediction for snap_scaffold_1-snap.905-T1 Couldn't classify 58510, 58519 Couldn't classify 60384, 60465 Sorry, prediction pasa_asmbl_1753.p1 fails validation. (TGG) CC 58510-58519 GT TGG (TGG) AG 58659-58970 GT AGG (ATG) AG 59092-59757 GT AGG (GCT) AG 60199-60268 GT AGG (TGT) AG 60384-60465 GG CAG add_exon() Sorry, pasa_asmbl_1753.p1 59092-59757-initial-1 is invalid. -recovered pasa_asmbl_1753.p1, initial, 59092, 59757 -recovered pasa_asmbl_1753.p1, internal, 58659, 58970 -recovered pasa_asmbl_1753.p1, internal, 59092, 59757 -recovered pasa_asmbl_1753.p1, internal, 60199, 60268 Valid prediction for snap_scaffold_1-snap.927-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g562.t1 Valid prediction for GlimmerHMM_glimmerT_743-T1 Couldn't classify 114380, 114532 Sorry, prediction pasa_asmbl_303.p1 fails validation. (GCT) GG 114380-114532 GT AGG (GTC) AG 114618-114682 GT TGG (TTT) AG 114875-114924 GT GGG (ACG) AG 115037-115142 GT AGG (GTT) AG 115239-115334 GT GGG (GCG) AG 115540-115650 GT AGG (GCC) AG 115867-115897 GG AGG -recovered pasa_asmbl_303.p1, terminal, 115867, 115897 -recovered pasa_asmbl_303.p1, internal, 114618, 114682 -recovered pasa_asmbl_303.p1, internal, 114875, 114924 -recovered pasa_asmbl_303.p1, internal, 115037, 115142 -recovered pasa_asmbl_303.p1, internal, 115239, 115334 -recovered pasa_asmbl_303.p1, internal, 115540, 115650 Valid prediction for snap_scaffold_1-snap.944-T1 Valid prediction for Augustus_model.g542.t1 Valid prediction for GeneMark_model.904_t Valid prediction for GlimmerHMM_glimmerT_745-T1 Valid prediction for GlimmerHMM_glimmerT_749-T1 Valid prediction for snap_scaffold_1-snap.938-T1 Valid prediction for Augustus_model.g553.t1 Valid prediction for GeneMark_model.938_t Valid prediction for Augustus_model.g570.t1 Valid prediction for CodingQuarry_transcript_2616-T1 Valid prediction for GlimmerHMM_glimmerT_720-T1 Valid prediction for GeneMark_model.907_t Valid prediction for GeneMark_model.930_t Valid prediction for GeneMark_model.908_t Valid prediction for Augustus_model.g569.t1 Valid prediction for GeneMark_model.921_t Valid prediction for snap_scaffold_1-snap.928-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GeneMark_model.920_t Valid prediction for GeneMark_model.928_t Valid prediction for HiQ_model.g549.t1 Valid prediction for GlimmerHMM_glimmerT_718-T1 Valid prediction for Augustus_model.g564.t1 Valid prediction for snap_scaffold_1-snap.910-T1 Valid prediction for Augustus_model.g548.t1 Valid prediction for snap_scaffold_1-snap.946-T1 Valid prediction for GeneMark_model.918_t Valid prediction for GlimmerHMM_glimmerT_733-T1 Valid prediction for GlimmerHMM_glimmerT_714-T1 Valid prediction for Augustus_model.g563.t1 Valid prediction for GlimmerHMM_glimmerT_750-T1 Valid prediction for GlimmerHMM_glimmerT_712-T1 Valid prediction for snap_scaffold_1-snap.943-T1 Valid prediction for GlimmerHMM_glimmerT_748-T1 Valid prediction for pasa_asmbl_294.p1 Valid prediction for snap_scaffold_1-snap.935-T1 Valid prediction for snap_scaffold_1-snap.934-T1 Valid prediction for snap_scaffold_1-snap.932-T1 Valid prediction for GeneMark_model.926_t Valid prediction for CodingQuarry_transcript_2619-T1 Valid prediction for snap_scaffold_1-snap.941-T1 Valid prediction for GeneMark_model.924_t Valid prediction for GeneMark_model.933_t Valid prediction for GlimmerHMM_glimmerT_738-T1 Valid prediction for Augustus_model.g546.t1 Valid prediction for GeneMark_model.913_t Valid prediction for GlimmerHMM_glimmerT_734-T1 Valid prediction for GlimmerHMM_glimmerT_722-T1 Valid prediction for snap_scaffold_1-snap.940-T1 Valid prediction for GeneMark_model.935_t Valid prediction for snap_scaffold_1-snap.913-T1 Valid prediction for GeneMark_model.916_t Valid prediction for snap_scaffold_1-snap.917-T1 Valid prediction for GeneMark_model.939_t Valid prediction for GeneMark_model.931_t Valid prediction for GlimmerHMM_glimmerT_721-T1 Valid prediction for snap_scaffold_1-snap.912-T1 Valid prediction for GlimmerHMM_glimmerT_736-T1 Valid prediction for snap_scaffold_1-snap.902-T1 Valid prediction for snap_scaffold_1-snap.945-T1 Valid prediction for GlimmerHMM_glimmerT_739-T1 Valid prediction for pasa_asmbl_291.p1 Valid prediction for snap_scaffold_1-snap.931-T1 Valid prediction for Augustus_model.g567.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 133872, rend_intergenic: 130700 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141815, rend_intergenic: 138713 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156580, rend_intergenic: 150385 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161277, rend_intergenic: 156608 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170879, rend_intergenic: 165828 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176454, rend_intergenic: 173047 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179503, rend_intergenic: 176518 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 192152, rend_intergenic: 181408 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196937, rend_intergenic: 194110 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 201617 -exon list size: 717 building trellis 0.1 0.3 0.4 0.6 0.7 0.8 1.0 1.1 1.3 1.4 1.5 1.7 1.8 1.9 2.1 2.2 2.4 2.5 2.6 2.8 2.9 3.1 3.2 3.3 3.5 3.6 3.8 3.9 4.0 4.2 4.3 4.5 4.6 4.7 4.9 5.0 5.1 5.3 5.4 5.6 5.7 5.8 6.0 6.1 6.3 6.4 6.5 6.7 6.8 7.0 7.1 7.2 7.4 7.5 7.6 7.8 7.9 8.1 8.2 8.3 8.5 8.6 8.8 8.9 9.0 9.2 9.3 9.5 9.6 9.7 9.9 10.0 10.2 10.3 10.4 10.6 10.7 10.8 11.0 11.1 11.3 11.4 11.5 11.7 11.8 12.0 12.1 12.2 12.4 12.5 12.7 12.8 12.9 13.1 13.2 13.4 13.5 13.6 13.8 13.9 14.0 14.2 14.3 14.5 14.6 14.7 14.9 15.0 15.2 15.3 15.4 15.6 15.7 15.9 16.0 16.1 16.3 16.4 16.6 16.7 16.8 17.0 17.1 17.2 17.4 17.5 17.7 17.8 17.9 18.1 18.2 18.4 18.5 18.6 18.8 18.9 19.1 19.2 19.3 19.5 19.6 19.7 19.9 20.0 20.2 20.3 20.4 20.6 20.7 20.9 21.0 21.1 21.3 21.4 21.6 21.7 21.8 22.0 22.1 22.3 22.4 22.5 22.7 22.8 22.9 23.1 23.2 23.4 23.5 23.6 23.8 23.9 24.1 24.2 24.3 24.5 24.6 24.8 24.9 25.0 25.2 25.3 25.5 25.6 25.7 25.9 26.0 26.1 26.3 26.4 26.6 26.7 26.8 27.0 27.1 27.3 27.4 27.5 27.7 27.8 28.0 28.1 28.2 28.4 28.5 28.7 28.8 28.9 29.1 29.2 29.3 29.5 29.6 29.8 29.9 30.0 30.2 30.3 30.5 30.6 30.7 30.9 31.0 31.2 31.3 31.4 31.6 31.7 31.8 32.0 32.1 32.3 32.4 32.5 32.7 32.8 33.0 33.1 33.2 33.4 33.5 33.7 33.8 33.9 34.1 34.2 34.4 34.5 34.6 34.8 34.9 35.0 35.2 35.3 35.5 35.6 35.7 35.9 36.0 36.2 36.3 36.4 36.6 36.7 36.9 37.0 37.1 37.3 37.4 37.6 37.7 37.8 38.0 38.1 38.2 38.4 38.5 38.7 38.8 38.9 39.1 39.2 39.4 39.5 39.6 39.8 39.9 40.1 40.2 40.3 40.5 40.6 40.8 40.9 41.0 41.2 41.3 41.4 41.6 41.7 41.9 42.0 42.1 42.3 42.4 42.6 42.7 42.8 43.0 43.1 43.3 43.4 43.5 43.7 43.8 43.9 44.1 44.2 44.4 44.5 44.6 44.8 44.9 45.1 45.2 45.3 45.5 45.6 45.8 45.9 46.0 46.2 46.3 46.5 46.6 46.7 46.9 47.0 47.1 47.3 47.4 47.6 47.7 47.8 48.0 48.1 48.3 48.4 48.5 48.7 48.8 49.0 49.1 49.2 49.4 49.5 49.7 49.8 49.9 50.1 50.2 50.3 50.5 50.6 50.8 50.9 51.0 51.2 51.3 51.5 51.6 51.7 51.9 52.0 52.2 52.3 52.4 52.6 52.7 52.9 53.0 53.1 53.3 53.4 53.5 53.7 53.8 54.0 54.1 54.2 54.4 54.5 54.7 54.8 54.9 55.1 55.2 55.4 55.5 55.6 55.8 55.9 56.1 56.2 56.3 56.5 56.6 56.7 56.9 57.0 57.2 57.3 57.4 57.6 57.7 57.9 58.0 58.1 58.3 58.4 58.6 58.7 58.8 59.0 59.1 59.2 59.4 59.5 59.7 59.8 59.9 60.1 60.2 60.4 60.5 60.6 60.8 60.9 61.1 61.2 61.3 61.5 61.6 61.8 61.9 62.0 62.2 62.3 62.4 62.6 62.7 62.9 63.0 63.1 63.3 63.4 63.6 63.7 63.8 64.0 64.1 64.3 64.4 64.5 64.7 64.8 65.0 65.1 65.2 65.4 65.5 65.6 65.8 65.9 66.1 66.2 66.3 66.5 66.6 66.8 66.9 67.0 67.2 67.3 67.5 67.6 67.7 67.9 68.0 68.2 68.3 68.4 68.6 68.7 68.8 69.0 69.1 69.3 69.4 69.5 69.7 69.8 70.0 70.1 70.2 70.4 70.5 70.7 70.8 70.9 71.1 71.2 71.3 71.5 71.6 71.8 71.9 72.0 72.2 72.3 72.5 72.6 72.7 72.9 73.0 73.2 73.3 73.4 73.6 73.7 73.9 74.0 74.1 74.3 74.4 74.5 74.7 74.8 75.0 75.1 75.2 75.4 75.5 75.7 75.8 75.9 76.1 76.2 76.4 76.5 76.6 76.8 76.9 77.1 77.2 77.3 77.5 77.6 77.7 77.9 78.0 78.2 78.3 78.4 78.6 78.7 78.9 79.0 79.1 79.3 79.4 79.6 79.7 79.8 80.0 80.1 80.3 80.4 80.5 80.7 80.8 80.9 81.1 81.2 81.4 81.5 81.6 81.8 81.9 82.1 82.2 82.3 82.5 82.6 82.8 82.9 83.0 83.2 83.3 83.4 83.6 83.7 83.9 84.0 84.1 84.3 84.4 84.6 84.7 84.8 85.0 85.1 85.3 85.4 85.5 85.7 85.8 86.0 86.1 86.2 86.4 86.5 86.6 86.8 86.9 87.1 87.2 87.3 87.5 87.6 87.8 87.9 88.0 88.2 88.3 88.5 88.6 88.7 88.9 89.0 89.2 89.3 89.4 89.6 89.7 89.8 90.0 90.1 90.3 90.4 90.5 90.7 90.8 91.0 91.1 91.2 91.4 91.5 91.7 91.8 91.9 92.1 92.2 92.4 92.5 92.6 92.8 92.9 93.0 93.2 93.3 93.5 93.6 93.7 93.9 94.0 94.2 94.3 94.4 94.6 94.7 94.9 95.0 95.1 95.3 95.4 95.5 95.7 95.8 96.0 96.1 96.2 96.4 96.5 96.7 96.8 96.9 97.1 97.2 97.4 97.5 97.6 97.8 97.9 98.1 98.2 98.3 98.5 98.6 98.7 98.9 99.0 99.2 99.3 99.4 99.6 99.7 99.9 -found 44 predictions from path traversal Error with prediction: snap lend_intergenic: 133872, rend_intergenic: 130700 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141815, rend_intergenic: 138713 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156580, rend_intergenic: 150385 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161277, rend_intergenic: 156608 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170879, rend_intergenic: 165828 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176454, rend_intergenic: 173047 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179503, rend_intergenic: 176518 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 192152, rend_intergenic: 181408 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196937, rend_intergenic: 194110 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 30 predictions persist after filtering for low support