-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_21305090-21542748

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.4659_t
Couldn't classify 58204, 58512
Sorry, prediction pasa_asmbl_2667.p1 fails validation.
(GCC)	 TG	58204-58512	CA	AGC
Valid prediction for Augustus_model.g2036.t1
Valid prediction for GeneMark_model.4657_t
Valid prediction for snap_scaffold_1-snap.4071-T1
Valid prediction for snap_scaffold_1-snap.4061-T1
Valid prediction for snap_scaffold_1-snap.4069-T1
Valid prediction for GlimmerHMM_glimmerT_2956-T1
Valid prediction for snap_scaffold_1-snap.4049-T1
Valid prediction for GlimmerHMM_glimmerT_2929-T1
Valid prediction for GeneMark_model.4619_t
Valid prediction for Augustus_model.g2035.t1
Valid prediction for GlimmerHMM_glimmerT_2944-T1
Valid prediction for snap_scaffold_1-snap.4083-T1
Valid prediction for GlimmerHMM_glimmerT_2930-T1
Valid prediction for GeneMark_model.4662_t
Valid prediction for GlimmerHMM_glimmerT_2937-T1
Valid prediction for GeneMark_model.4606_t
Valid prediction for snap_scaffold_1-snap.4079-T1
Valid prediction for CodingQuarry_transcript_3043-T1
Valid prediction for GeneMark_model.4655_t
Valid prediction for snap_scaffold_1-snap.4073-T1
Valid prediction for GeneMark_model.4664_t
Valid prediction for GeneMark_model.4628_t
Valid prediction for GeneMark_model.4646_t
Valid prediction for GlimmerHMM_glimmerT_2951-T1
Valid prediction for GlimmerHMM_glimmerT_2947-T1
Valid prediction for snap_scaffold_1-snap.4065-T1
Valid prediction for GlimmerHMM_glimmerT_2928-T1
Valid prediction for GlimmerHMM_glimmerT_2935-T1
Valid prediction for GeneMark_model.4609_t
Valid prediction for snap_scaffold_1-snap.4080-T1
Valid prediction for GeneMark_model.4611_t
Valid prediction for snap_scaffold_1-snap.4075-T1
Valid prediction for snap_scaffold_1-snap.4077-T1
Valid prediction for snap_scaffold_1-snap.4045-T1
Valid prediction for GeneMark_model.4621_t
Valid prediction for GeneMark_model.4645_t
Valid prediction for snap_scaffold_1-snap.4062-T1
Valid prediction for snap_scaffold_1-snap.4041-T1
Valid prediction for GeneMark_model.4661_t
Valid prediction for snap_scaffold_1-snap.4040-T1
Valid prediction for GeneMark_model.4639_t
Valid prediction for Augustus_model.g2039.t1
Valid prediction for GeneMark_model.4632_t
Valid prediction for GlimmerHMM_glimmerT_2952-T1
Valid prediction for GlimmerHMM_glimmerT_2931-T1
Valid prediction for GlimmerHMM_glimmerT_2941-T1
Valid prediction for GeneMark_model.4642_t
Valid prediction for GlimmerHMM_glimmerT_2932-T1
Valid prediction for GeneMark_model.4618_t
Valid prediction for GeneMark_model.4653_t
Valid prediction for snap_scaffold_1-snap.4064-T1
Valid prediction for snap_scaffold_1-snap.4091-T1
Valid prediction for GeneMark_model.4607_t
Valid prediction for GeneMark_model.4623_t
Valid prediction for snap_scaffold_1-snap.4081-T1
Valid prediction for GlimmerHMM_glimmerT_2927-T1
Valid prediction for GeneMark_model.4625_t
Valid prediction for snap_scaffold_1-snap.4059-T1
Valid prediction for GlimmerHMM_glimmerT_2943-T1
Valid prediction for GeneMark_model.4640_t
Valid prediction for GlimmerHMM_glimmerT_2936-T1
Valid prediction for snap_scaffold_1-snap.4072-T1
Valid prediction for GlimmerHMM_glimmerT_2949-T1
Valid prediction for GeneMark_model.4649_t
Valid prediction for GeneMark_model.4613_t
Valid prediction for GeneMark_model.4605_t
Valid prediction for GeneMark_model.4671_t
Valid prediction for GeneMark_model.4637_t
Valid prediction for GeneMark_model.4603_t
Valid prediction for GeneMark_model.4631_t
Valid prediction for snap_scaffold_1-snap.4085-T1
Valid prediction for snap_scaffold_1-snap.4087-T1
Valid prediction for GeneMark_model.4647_t
Valid prediction for GeneMark_model.4673_t
Valid prediction for GeneMark_model.4634_t
Valid prediction for snap_scaffold_1-snap.4066-T1
Valid prediction for GeneMark_model.4674_t
Couldn't classify 57122, 57174
Couldn't classify 58060, 58137
Sorry, prediction pasa_asmbl_2808.p1 fails validation.
(CTC)	 AG	57122-57174	GT	GGG
(GAA)	 AG	57435-57654	GT	TGG
(GGG)	 AG	58060-58137	AC	CGA
-recovered pasa_asmbl_2808.p1, internal, 57122, 57174
-recovered pasa_asmbl_2808.p1, internal, 57435, 57654
Valid prediction for GeneMark_model.4670_t
Valid prediction for Augustus_model.g2041.t1
Valid prediction for snap_scaffold_1-snap.4051-T1
Valid prediction for GlimmerHMM_glimmerT_2933-T1
Valid prediction for GlimmerHMM_glimmerT_2939-T1
Valid prediction for GeneMark_model.4667_t
Valid prediction for GeneMark_model.4626_t
Valid prediction for snap_scaffold_1-snap.4058-T1
Valid prediction for Augustus_model.g2037.t1
Valid prediction for GeneMark_model.4616_t
Valid prediction for snap_scaffold_1-snap.4088-T1
Valid prediction for snap_scaffold_1-snap.4055-T1
Valid prediction for snap_scaffold_1-snap.4089-T1
Valid prediction for snap_scaffold_1-snap.4067-T1
Valid prediction for GeneMark_model.4676_t
Valid prediction for snap_scaffold_1-snap.4043-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.4627_t
Valid prediction for snap_scaffold_1-snap.4053-T1
Valid prediction for snap_scaffold_1-snap.4076-T1
Valid prediction for GlimmerHMM_glimmerT_2924-T1
Valid prediction for GeneMark_model.4636_t
Valid prediction for Augustus_model.g2040.t1
Valid prediction for GeneMark_model.4658_t
Valid prediction for GlimmerHMM_glimmerT_2954-T1
Valid prediction for GeneMark_model.4624_t
Valid prediction for GeneMark_model.4620_t
Valid prediction for GeneMark_model.4652_t
Valid prediction for GeneMark_model.4669_t
Valid prediction for GeneMark_model.4654_t
Valid prediction for snap_scaffold_1-snap.4063-T1
Valid prediction for snap_scaffold_1-snap.4078-T1
Valid prediction for GeneMark_model.4656_t
Valid prediction for GlimmerHMM_glimmerT_2957-T1
Valid prediction for GeneMark_model.4612_t
Valid prediction for snap_scaffold_1-snap.4092-T1
Valid prediction for GeneMark_model.4660_t
Valid prediction for snap_scaffold_1-snap.4068-T1
Valid prediction for GeneMark_model.4608_t
Valid prediction for snap_scaffold_1-snap.4050-T1
Valid prediction for snap_scaffold_1-snap.4086-T1
Valid prediction for GeneMark_model.4648_t
Valid prediction for Augustus_model.g2042.t1
Valid prediction for GlimmerHMM_glimmerT_2934-T1
Valid prediction for snap_scaffold_1-snap.4057-T1
Valid prediction for GeneMark_model.4610_t
Valid prediction for snap_scaffold_1-snap.4060-T1
Valid prediction for GeneMark_model.4665_t
Valid prediction for snap_scaffold_1-snap.4054-T1
Valid prediction for snap_scaffold_1-snap.4082-T1
Valid prediction for Augustus_model.g2045.t1
Valid prediction for snap_scaffold_1-snap.4042-T1
Valid prediction for GlimmerHMM_glimmerT_2950-T1
Valid prediction for snap_scaffold_1-snap.4052-T1
Valid prediction for GeneMark_model.4614_t
Valid prediction for GeneMark_model.4633_t
Valid prediction for GlimmerHMM_glimmerT_2942-T1
Valid prediction for GeneMark_model.4675_t
Valid prediction for GlimmerHMM_glimmerT_2953-T1
Valid prediction for snap_scaffold_1-snap.4074-T1
Valid prediction for GeneMark_model.4629_t
Valid prediction for GlimmerHMM_glimmerT_2925-T1
Valid prediction for GeneMark_model.4615_t
Valid prediction for snap_scaffold_1-snap.4090-T1
Valid prediction for snap_scaffold_1-snap.4044-T1
Valid prediction for GeneMark_model.4643_t
Valid prediction for snap_scaffold_1-snap.4048-T1
Couldn't classify 23719, 23769
Sorry, prediction GeneMark_model.4668_t fails validation.
(ATG)	 GT	22584-22600	GT	GAG
(ACT)	 AG	22623-22640	GT	CAG
(ACT)	 AG	22661-22690	GT	CAG
(TGG)	 AG	22711-22749	GT	CAG
(TGG)	 AG	22770-22808	GT	CAG
(TGG)	 AG	22829-22867	GT	CAG
(AGA)	 AG	22895-22912	GT	TGG
(GAG)	 AG	22946-22951	GT	GAG
(ACT)	 AG	22974-22991	GT	CAG
(TGG)	 AG	23012-23050	GT	CAG
(ACT)	 AG	23071-23100	GT	CAG
(TGG)	 AG	23121-23159	GT	CAG
(TGG)	 AG	23180-23242	GT	GAG
(ACT)	 AG	23265-23300	GT	GAG
(ACT)	 AG	23325-23354	GT	GAG
(ACT)	 AG	23390-23416	GT	GAG
(ACA)	 AG	23443-23529	GT	CAG
(ACT)	 AG	23561-23590	GT	CAG
(AGA)	 AG	23637-23648	GT	CAG
(ACT)	 AG	23669-23698	GT	CAG
(ACT)	 AG	23719-23769	GT	GAG
-recovered GeneMark_model.4668_t, initial, 22584, 22600
-recovered GeneMark_model.4668_t, internal, 22623, 22640
-recovered GeneMark_model.4668_t, internal, 22661, 22690
-recovered GeneMark_model.4668_t, internal, 22711, 22749
-recovered GeneMark_model.4668_t, internal, 22770, 22808
-recovered GeneMark_model.4668_t, internal, 22829, 22867
-recovered GeneMark_model.4668_t, internal, 22895, 22912
-recovered GeneMark_model.4668_t, internal, 22946, 22951
-recovered GeneMark_model.4668_t, internal, 22974, 22991
-recovered GeneMark_model.4668_t, internal, 23012, 23050
-recovered GeneMark_model.4668_t, internal, 23071, 23100
-recovered GeneMark_model.4668_t, internal, 23121, 23159
-recovered GeneMark_model.4668_t, internal, 23180, 23242
-recovered GeneMark_model.4668_t, internal, 23265, 23300
-recovered GeneMark_model.4668_t, internal, 23325, 23354
-recovered GeneMark_model.4668_t, internal, 23390, 23416
-recovered GeneMark_model.4668_t, internal, 23443, 23529
-recovered GeneMark_model.4668_t, internal, 23561, 23590
-recovered GeneMark_model.4668_t, internal, 23637, 23648
-recovered GeneMark_model.4668_t, internal, 23669, 23698
-recovered GeneMark_model.4668_t, internal, 23719, 23769
Couldn't classify 116876, 117058
Sorry, prediction pasa_asmbl_1210.p1 fails validation.
(CCC)	 AG	116876-117058	GT	AGG
(AAC)	 AG	118634-118713	GT	AGG
(GTA)	 AG	119603-119803	GT	CAG
(TCT)	 AG	120987-121068	GT	ACG
(GCT)	 AG	123673-123795	GT	AGG
(CTG)	 AG	126080-126219	GT	AGG
(GGC)	 AG	126533-126695	GT	AGG
(GCG)	 AG	127494-127593	GT	AGG
(GCG)	 AG	127725-127880	GT	GGG
(GTG)	 AG	127987-128094	GT	TGG
(GAA)	 AG	129068-129195	AG	AGA
-recovered pasa_asmbl_1210.p1, terminal, 129068, 129195
-recovered pasa_asmbl_1210.p1, internal, 116876, 117058
-recovered pasa_asmbl_1210.p1, internal, 118634, 118713
-recovered pasa_asmbl_1210.p1, internal, 119603, 119803
-recovered pasa_asmbl_1210.p1, internal, 120987, 121068
-recovered pasa_asmbl_1210.p1, internal, 123673, 123795
-recovered pasa_asmbl_1210.p1, internal, 126080, 126219
-recovered pasa_asmbl_1210.p1, internal, 126533, 126695
-recovered pasa_asmbl_1210.p1, internal, 127494, 127593
-recovered pasa_asmbl_1210.p1, internal, 127725, 127880
-recovered pasa_asmbl_1210.p1, internal, 127987, 128094
Valid prediction for GlimmerHMM_glimmerT_2946-T1
Valid prediction for snap_scaffold_1-snap.4070-T1
Valid prediction for snap_scaffold_1-snap.4084-T1
Valid prediction for HiQ_model.g2038.t1
Valid prediction for GeneMark_model.4666_t
Valid prediction for GeneMark_model.4604_t
Valid prediction for Augustus_model.g2043.t1
Valid prediction for Augustus_model.g2046.t1
Valid prediction for GlimmerHMM_glimmerT_2948-T1
Valid prediction for GeneMark_model.4617_t
Valid prediction for GeneMark_model.4663_t
Valid prediction for GeneMark_model.4622_t
Valid prediction for snap_scaffold_1-snap.4047-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for Augustus_model.g2044.t1
Valid prediction for GeneMark_model.4641_t
Valid prediction for GeneMark_model.4650_t
Valid prediction for GeneMark_model.4672_t
Valid prediction for GlimmerHMM_glimmerT_2945-T1
Valid prediction for GlimmerHMM_glimmerT_2955-T1
Valid prediction for snap_scaffold_1-snap.4046-T1
Valid prediction for snap_scaffold_1-snap.4056-T1
Valid prediction for GeneMark_model.4638_t
Valid prediction for GlimmerHMM_glimmerT_2926-T1
Valid prediction for GlimmerHMM_glimmerT_2938-T1
Valid prediction for GlimmerHMM_glimmerT_2940-T1
Valid prediction for GeneMark_model.4635_t
Valid prediction for GeneMark_model.4644_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16533, rend_intergenic: 14283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24680, rend_intergenic: 16828  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55996, rend_intergenic: 45663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61739, rend_intergenic: 56685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77763, rend_intergenic: 74733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83744, rend_intergenic: 81356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96084, rend_intergenic: 86045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99159, rend_intergenic: 96109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107466, rend_intergenic: 104050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109967, rend_intergenic: 108465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125235, rend_intergenic: 110108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140099, rend_intergenic: 133425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147398, rend_intergenic: 145059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151481, rend_intergenic: 147566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160361, rend_intergenic: 151835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182797, rend_intergenic: 165197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189693, rend_intergenic: 184861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193059, rend_intergenic: 191925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193935, rend_intergenic: 193205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197194, rend_intergenic: 194898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198308, rend_intergenic: 197684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206652, rend_intergenic: 198467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217156, rend_intergenic: 216970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219831, rend_intergenic: 217199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220678, rend_intergenic: 219878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 237659
-exon list size: 1045


building trellis

0.1    
0.2    
0.3    
0.4    
0.5    
0.6    
0.7    
0.8    
0.9    
1.0    
1.1    
1.1    
1.2    
1.3    
1.4    
1.5    
1.6    
1.7    
1.8    
1.9    
2.0    
2.1    
2.2    
2.3    
2.4    
2.5    
2.6    
2.7    
2.8    
2.9    
3.0    
3.1    
3.2    
3.2    
3.3    
3.4    
3.5    
3.6    
3.7    
3.8    
3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.5    
4.6    
4.7    
4.8    
4.9    
5.0    
5.1    
5.2    
5.3    
5.3    
5.4    
5.5    
5.6    
5.7    
5.8    
5.9    
6.0    
6.1    
6.2    
6.3    
6.4    
6.5    
6.6    
6.7    
6.8    
6.9    
7.0    
7.1    
7.2    
7.3    
7.4    
7.4    
7.5    
7.6    
7.7    
7.8    
7.9    
8.0    
8.1    
8.2    
8.3    
8.4    
8.5    
8.6    
8.7    
8.8    
8.9    
9.0    
9.1    
9.2    
9.3    
9.4    
9.5    
9.6    
9.6    
9.7    
9.8    
9.9    
10.0    
10.1    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.8    
10.9    
11.0    
11.1    
11.2    
11.3    
11.4    
11.5    
11.6    
11.7    
11.7    
11.8    
11.9    
12.0    
12.1    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.8    
12.9    
13.0    
13.1    
13.2    
13.3    
13.4    
13.5    
13.6    
13.7    
13.8    
13.8    
13.9    
14.0    
14.1    
14.2    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
15.9    
16.0    
16.0    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.7    
16.8    
16.9    
17.0    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.1    
18.2    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.3    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 47 predictions from path traversal
Error with prediction: snap lend_intergenic: 16533, rend_intergenic: 14283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24680, rend_intergenic: 16828  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55996, rend_intergenic: 45663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61739, rend_intergenic: 56685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77763, rend_intergenic: 74733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83744, rend_intergenic: 81356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96084, rend_intergenic: 86045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99159, rend_intergenic: 96109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107466, rend_intergenic: 104050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109967, rend_intergenic: 108465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125235, rend_intergenic: 110108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140099, rend_intergenic: 133425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147398, rend_intergenic: 145059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151481, rend_intergenic: 147566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160361, rend_intergenic: 151835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182797, rend_intergenic: 165197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189693, rend_intergenic: 184861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193059, rend_intergenic: 191925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193935, rend_intergenic: 193205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197194, rend_intergenic: 194898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198308, rend_intergenic: 197684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206652, rend_intergenic: 198467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217156, rend_intergenic: 216970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219831, rend_intergenic: 217199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220678, rend_intergenic: 219878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support