-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_19963619-20202553

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.4258_t
Valid prediction for GeneMark_model.4230_t
Valid prediction for GlimmerHMM_glimmerT_2777-T1
Valid prediction for GeneMark_model.4246_t
Valid prediction for snap_scaffold_1-snap.3763-T1
Valid prediction for GeneMark_model.4225_t
Valid prediction for GeneMark_model.4260_t
Valid prediction for GeneMark_model.4233_t
Valid prediction for GlimmerHMM_glimmerT_2753-T1
Valid prediction for GeneMark_model.4228_t
Valid prediction for GeneMark_model.4257_t
Valid prediction for GeneMark_model.4239_t
Valid prediction for snap_scaffold_1-snap.3752-T1
Valid prediction for GeneMark_model.4229_t
Valid prediction for GlimmerHMM_glimmerT_2767-T1
Valid prediction for Augustus_model.g1939.t1
Valid prediction for GeneMark_model.4243_t
Valid prediction for snap_scaffold_1-snap.3743-T1
Valid prediction for GeneMark_model.4273_t
Couldn't classify 117339, 117535
Sorry, prediction pasa_asmbl_2592.p1 fails validation.
(ATG)	 CA	116060-116217	GT	TGG
(GAA)	 AG	116908-117062	GT	AGG
(GTG)	 AG	117339-117535	GG	GAG
-recovered pasa_asmbl_2592.p1, initial, 116060, 116217
-recovered pasa_asmbl_2592.p1, internal, 116908, 117062
Valid prediction for snap_scaffold_1-snap.3739-T1
Valid prediction for GeneMark_model.4268_t
Valid prediction for snap_scaffold_1-snap.3745-T1
Valid prediction for GlimmerHMM_glimmerT_2763-T1
Valid prediction for GeneMark_model.4275_t
Valid prediction for GlimmerHMM_glimmerT_2769-T1
Valid prediction for GeneMark_model.4219_t
Valid prediction for snap_scaffold_1-snap.3756-T1
Valid prediction for snap_scaffold_1-snap.3734-T1
Valid prediction for GeneMark_model.4262_t
Valid prediction for Augustus_model.g1948.t1
Valid prediction for snap_scaffold_1-snap.3741-T1
Valid prediction for GeneMark_model.4251_t
Valid prediction for GeneMark_model.4249_t
Valid prediction for GeneMark_model.4269_t
Valid prediction for snap_scaffold_1-snap.3774-T1
Valid prediction for snap_scaffold_1-snap.3737-T1
Valid prediction for GlimmerHMM_glimmerT_2774-T1
Valid prediction for Augustus_model.g1940.t1
Valid prediction for GeneMark_model.4231_t
Valid prediction for snap_scaffold_1-snap.3767-T1
Valid prediction for snap_scaffold_1-snap.3782-T1
Valid prediction for GeneMark_model.4227_t
Valid prediction for GlimmerHMM_glimmerT_2751-T1
Valid prediction for snap_scaffold_1-snap.3765-T1
Valid prediction for GeneMark_model.4235_t
Valid prediction for GlimmerHMM_glimmerT_2775-T1
Valid prediction for GlimmerHMM_glimmerT_2752-T1
Valid prediction for GlimmerHMM_glimmerT_2770-T1
Valid prediction for GeneMark_model.4267_t
Valid prediction for GeneMark_model.4241_t
Valid prediction for Augustus_model.g1945.t1
Valid prediction for snap_scaffold_1-snap.3729-T1
Valid prediction for snap_scaffold_1-snap.3770-T1
Valid prediction for GeneMark_model.4210_t
Valid prediction for snap_scaffold_1-snap.3748-T1
Valid prediction for GeneMark_model.4244_t
Valid prediction for snap_scaffold_1-snap.3776-T1
Valid prediction for GeneMark_model.4271_t
Valid prediction for snap_scaffold_1-snap.3727-T1
Valid prediction for Augustus_model.g1943.t1
Valid prediction for snap_scaffold_1-snap.3757-T1
Valid prediction for snap_scaffold_1-snap.3777-T1
Valid prediction for Augustus_model.g1952.t1
Valid prediction for GeneMark_model.4255_t
Valid prediction for GlimmerHMM_glimmerT_2759-T1
Valid prediction for snap_scaffold_1-snap.3781-T1
Valid prediction for GlimmerHMM_glimmerT_2750-T1
Valid prediction for pasa_asmbl_2590.p1
Valid prediction for GeneMark_model.4223_t
Valid prediction for GeneMark_model.4215_t
Valid prediction for snap_scaffold_1-snap.3740-T1
Valid prediction for snap_scaffold_1-snap.3768-T1
Valid prediction for GeneMark_model.4217_t
Valid prediction for GlimmerHMM_glimmerT_2749-T1
Valid prediction for GeneMark_model.4206_t
Valid prediction for snap_scaffold_1-snap.3721-T1
Valid prediction for snap_scaffold_1-snap.3746-T1
Valid prediction for snap_scaffold_1-snap.3720-T1
Valid prediction for GeneMark_model.4221_t
Valid prediction for snap_scaffold_1-snap.3738-T1
Valid prediction for GeneMark_model.4208_t
Valid prediction for snap_scaffold_1-snap.3759-T1
Valid prediction for GeneMark_model.4237_t
Valid prediction for GlimmerHMM_glimmerT_2756-T1
Valid prediction for GeneMark_model.4264_t
Valid prediction for GeneMark_model.4265_t
Valid prediction for snap_scaffold_1-snap.3732-T1
Valid prediction for snap_scaffold_1-snap.3760-T1
Valid prediction for GeneMark_model.4250_t
Valid prediction for Augustus_model.g1938.t1
Valid prediction for pasa_asmbl_2594.p2
Valid prediction for snap_scaffold_1-snap.3731-T1
Valid prediction for GeneMark_model.4259_t
Valid prediction for snap_scaffold_1-snap.3718-T1
Valid prediction for GeneMark_model.4253_t
Valid prediction for Augustus_model.g1946.t1
Valid prediction for snap_scaffold_1-snap.3749-T1
Valid prediction for GeneMark_model.4248_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.3775-T1
Valid prediction for snap_scaffold_1-snap.3754-T1
Valid prediction for GlimmerHMM_glimmerT_2757-T1
Valid prediction for snap_scaffold_1-snap.3724-T1
Valid prediction for GlimmerHMM_glimmerT_2765-T1
Valid prediction for GlimmerHMM_glimmerT_2755-T1
Valid prediction for CodingQuarry_transcript_3012-T1
Valid prediction for GeneMark_model.4212_t
Valid prediction for GeneMark_model.4276_t
Valid prediction for snap_scaffold_1-snap.3719-T1
Valid prediction for GlimmerHMM_glimmerT_2754-T1
Valid prediction for GeneMark_model.4261_t
Valid prediction for snap_scaffold_1-snap.3755-T1
Valid prediction for snap_scaffold_1-snap.3766-T1
Valid prediction for GeneMark_model.4252_t
Valid prediction for GeneMark_model.4232_t
Valid prediction for snap_scaffold_1-snap.3778-T1
Valid prediction for snap_scaffold_1-snap.3771-T1
Valid prediction for GlimmerHMM_glimmerT_2760-T1
Valid prediction for snap_scaffold_1-snap.3784-T1
Valid prediction for snap_scaffold_1-snap.3726-T1
Valid prediction for snap_scaffold_1-snap.3728-T1
Valid prediction for GlimmerHMM_glimmerT_2758-T1
Valid prediction for GeneMark_model.4266_t
Valid prediction for snap_scaffold_1-snap.3762-T1
Valid prediction for GlimmerHMM_glimmerT_2768-T1
Valid prediction for GlimmerHMM_glimmerT_2773-T1
Valid prediction for GlimmerHMM_glimmerT_2766-T1
Valid prediction for snap_scaffold_1-snap.3747-T1
Valid prediction for snap_scaffold_1-snap.3758-T1
Valid prediction for snap_scaffold_1-snap.3735-T1
Valid prediction for GeneMark_model.4263_t
Valid prediction for snap_scaffold_1-snap.3783-T1
Valid prediction for snap_scaffold_1-snap.3753-T1
Valid prediction for HiQ_model.g1944.t1
Valid prediction for GeneMark_model.4211_t
Valid prediction for GeneMark_model.4234_t
Valid prediction for GeneMark_model.4270_t
Valid prediction for GeneMark_model.4220_t
Valid prediction for pasa_asmbl_1170.p2
Valid prediction for GeneMark_model.4224_t
Valid prediction for snap_scaffold_1-snap.3764-T1
Valid prediction for GeneMark_model.4218_t
Valid prediction for GeneMark_model.4247_t
Valid prediction for snap_scaffold_1-snap.3722-T1
Valid prediction for snap_scaffold_1-snap.3769-T1
Valid prediction for GlimmerHMM_glimmerT_2771-T1
Valid prediction for GeneMark_model.4207_t
Valid prediction for snap_scaffold_1-snap.3733-T1
Valid prediction for GlimmerHMM_glimmerT_2772-T1
Valid prediction for snap_scaffold_1-snap.3780-T1
Valid prediction for GeneMark_model.4222_t
Valid prediction for Augustus_model.g1941.t1
Couldn't classify 169872, 170057
Sorry, prediction pasa_asmbl_1163.p1 fails validation.
(ATG)	 AC	164704-164781	GT	GGG
(GTG)	 AG	165145-165291	GT	ATG
(GTC)	 AG	166392-166499	GT	GGG
(TTC)	 AG	167236-167415	GT	TTG
(GAC)	 AG	167688-167825	GT	GCG
(TAC)	 AG	168483-168554	GT	GGG
(AAA)	 AG	168840-168923	GT	AGG
(ACC)	 AG	169195-169332	GT	TGG
(ACA)	 AG	169872-170057	AC	TCA
-recovered pasa_asmbl_1163.p1, initial, 164704, 164781
-recovered pasa_asmbl_1163.p1, internal, 165145, 165291
-recovered pasa_asmbl_1163.p1, internal, 166392, 166499
-recovered pasa_asmbl_1163.p1, internal, 167236, 167415
-recovered pasa_asmbl_1163.p1, internal, 167688, 167825
-recovered pasa_asmbl_1163.p1, internal, 168483, 168554
-recovered pasa_asmbl_1163.p1, internal, 168840, 168923
-recovered pasa_asmbl_1163.p1, internal, 169195, 169332
Valid prediction for snap_scaffold_1-snap.3736-T1
Valid prediction for snap_scaffold_1-snap.3772-T1
Valid prediction for GeneMark_model.4254_t
Valid prediction for GlimmerHMM_glimmerT_2779-T1
Valid prediction for snap_scaffold_1-snap.3744-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 90018, 90035
Sorry, prediction pasa_asmbl_1167.p1 fails validation.
(ATG)	 GC	87320-87379	GT	AGG
(GTG)	 AG	87853-88009	GT	AGG
(GCC)	 AG	88263-88498	GT	AGG
(CTG)	 AG	89205-89360	GT	AGG
(GCC)	 AG	90018-90035	CG	AGC
-recovered pasa_asmbl_1167.p1, initial, 87320, 87379
-recovered pasa_asmbl_1167.p1, internal, 87853, 88009
-recovered pasa_asmbl_1167.p1, internal, 88263, 88498
-recovered pasa_asmbl_1167.p1, internal, 89205, 89360
Valid prediction for snap_scaffold_1-snap.3773-T1
Valid prediction for GeneMark_model.4240_t
Valid prediction for snap_scaffold_1-snap.3730-T1
Valid prediction for GeneMark_model.4216_t
Valid prediction for GlimmerHMM_glimmerT_2778-T1
Valid prediction for GeneMark_model.4256_t
Valid prediction for GlimmerHMM_glimmerT_2762-T1
Valid prediction for CodingQuarry_transcript_3014-T1
Valid prediction for snap_scaffold_1-snap.3751-T1
Valid prediction for snap_scaffold_1-snap.3725-T1
Valid prediction for GeneMark_model.4226_t
Valid prediction for GeneMark_model.4242_t
Valid prediction for snap_scaffold_1-snap.3779-T1
Valid prediction for GlimmerHMM_glimmerT_2776-T1
Valid prediction for snap_scaffold_1-snap.3723-T1
Valid prediction for CodingQuarry_transcript_3015-T1
Valid prediction for GeneMark_model.4277_t
Valid prediction for Augustus_model.g1950.t1
Valid prediction for GlimmerHMM_glimmerT_2761-T1
Valid prediction for snap_scaffold_1-snap.3761-T1
Valid prediction for Augustus_model.g1949.t1
Valid prediction for GlimmerHMM_glimmerT_2764-T1
Valid prediction for Augustus_model.g1951.t1
Valid prediction for GeneMark_model.4245_t
Valid prediction for CodingQuarry_transcript_3016-T1
Valid prediction for GeneMark_model.4272_t
Valid prediction for GeneMark_model.4236_t
Couldn't classify 140653, 141058
Sorry, prediction Augustus_model.g1942.t1 fails validation.
(GAC)	 AG	140653-141058	GT	AGG
(CCA)	 AG	141338-141433	TT	AAT
-recovered Augustus_model.g1942.t1, terminal, 141338, 141433
-recovered Augustus_model.g1942.t1, internal, 140653, 141058
Valid prediction for pasa_asmbl_1164.p2
Valid prediction for GeneMark_model.4213_t
Valid prediction for snap_scaffold_1-snap.3742-T1
Valid prediction for GeneMark_model.4274_t
Valid prediction for GeneMark_model.4209_t
Valid prediction for Augustus_model.g1947.t1
Valid prediction for snap_scaffold_1-snap.3750-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7152, rend_intergenic: 4354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9733, rend_intergenic: 7162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11377, rend_intergenic: 9917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33156, rend_intergenic: 21376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36371, rend_intergenic: 33210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42583, rend_intergenic: 37815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45113, rend_intergenic: 42589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52717, rend_intergenic: 46829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58118, rend_intergenic: 54036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59551, rend_intergenic: 59318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82833, rend_intergenic: 64328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86805, rend_intergenic: 83184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93686, rend_intergenic: 90493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98171, rend_intergenic: 94916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103323, rend_intergenic: 98174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111043, rend_intergenic: 103373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130681, rend_intergenic: 125905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134853, rend_intergenic: 133429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140950, rend_intergenic: 136711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150210, rend_intergenic: 147092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150669, rend_intergenic: 150342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151616, rend_intergenic: 151174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158854, rend_intergenic: 151646  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164745, rend_intergenic: 159777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179215, rend_intergenic: 175543  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210541, rend_intergenic: 203411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216836, rend_intergenic: 211810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228494, rend_intergenic: 223876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231875, rend_intergenic: 230073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 238935
-exon list size: 1164


building trellis

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32.0    
32.1    
32.2    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.7    
99.8    
99.9    
-found 40 predictions from path traversal
Error with prediction: snap lend_intergenic: 7152, rend_intergenic: 4354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9733, rend_intergenic: 7162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11377, rend_intergenic: 9917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33156, rend_intergenic: 21376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36371, rend_intergenic: 33210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42583, rend_intergenic: 37815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45113, rend_intergenic: 42589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52717, rend_intergenic: 46829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58118, rend_intergenic: 54036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59551, rend_intergenic: 59318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82833, rend_intergenic: 64328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86805, rend_intergenic: 83184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93686, rend_intergenic: 90493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98171, rend_intergenic: 94916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103323, rend_intergenic: 98174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111043, rend_intergenic: 103373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130681, rend_intergenic: 125905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134853, rend_intergenic: 133429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140950, rend_intergenic: 136711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150210, rend_intergenic: 147092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150669, rend_intergenic: 150342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151616, rend_intergenic: 151174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158854, rend_intergenic: 151646  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164745, rend_intergenic: 159777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179215, rend_intergenic: 175543  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210541, rend_intergenic: 203411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216836, rend_intergenic: 211810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228494, rend_intergenic: 223876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231875, rend_intergenic: 230073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 23111
-exon list size: 95


building trellis

1.0    
2.1    
3.1    
4.1    
5.2    
6.2    
7.2    
8.2    
9.3    
10.3    
11.3    
12.4    
13.4    
14.4    
15.5    
16.5    
17.5    
18.6    
19.6    
20.6    
21.6    
22.7    
23.7    
24.7    
25.8    
26.8    
27.8    
28.9    
29.9    
30.9    
32.0    
33.0    
34.0    
35.1    
36.1    
37.1    
38.1    
39.2    
40.2    
41.2    
42.3    
43.3    
44.3    
45.4    
46.4    
47.4    
48.5    
49.5    
50.5    
51.5    
52.6    
53.6    
54.6    
55.7    
56.7    
57.7    
58.8    
59.8    
60.8    
61.9    
62.9    
63.9    
64.9    
66.0    
67.0    
68.0    
69.1    
70.1    
71.1    
72.2    
73.2    
74.2    
75.3    
76.3    
77.3    
78.4    
79.4    
80.4    
81.4    
82.5    
83.5    
84.5    
85.6    
86.6    
87.6    
88.7    
89.7    
90.7    
91.8    
92.8    
93.8    
94.8    
95.9    
96.9    
97.9    
99.0    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12468
-exon list size: 70


building trellis

1.4    
2.8    
4.2    
5.6    
6.9    
8.3    
9.7    
11.1    
12.5    
13.9    
15.3    
16.7    
18.1    
19.4    
20.8    
22.2    
23.6    
25.0    
26.4    
27.8    
29.2    
30.6    
31.9    
33.3    
34.7    
36.1    
37.5    
38.9    
40.3    
41.7    
43.1    
44.4    
45.8    
47.2    
48.6    
50.0    
51.4    
52.8    
54.2    
55.6    
56.9    
58.3    
59.7    
61.1    
62.5    
63.9    
65.3    
66.7    
68.1    
69.4    
70.8    
72.2    
73.6    
75.0    
76.4    
77.8    
79.2    
80.6    
81.9    
83.3    
84.7    
86.1    
87.5    
88.9    
90.3    
91.7    
93.1    
94.4    
95.8    
97.2    
98.6    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11085
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10310
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support