-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_18836441-19047971

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_2622-T1
Valid prediction for GeneMark_model.3907_t
Valid prediction for GeneMark_model.3949_t
Valid prediction for GeneMark_model.3927_t
Valid prediction for snap_scaffold_1-snap.3501-T1
Valid prediction for GeneMark_model.3917_t
Valid prediction for snap_scaffold_1-snap.3517-T1
Valid prediction for GeneMark_model.3894_t
Valid prediction for snap_scaffold_1-snap.3530-T1
Valid prediction for snap_scaffold_1-snap.3527-T1
Valid prediction for snap_scaffold_1-snap.3532-T1
Valid prediction for pasa_asmbl_2563.p3
Valid prediction for snap_scaffold_1-snap.3526-T1
Valid prediction for snap_scaffold_1-snap.3505-T1
Valid prediction for GeneMark_model.3898_t
Valid prediction for GlimmerHMM_glimmerT_2620-T1
Couldn't classify 199944, 200111
Sorry, prediction CodingQuarry_transcript_3000-T1 fails validation.
(ATG)	 AG	199944-200111	TG	GAT
(GTG)	 AG	200240-200404	GT	AAG
-recovered CodingQuarry_transcript_3000-T1, terminal, 200240, 200404
-recovered CodingQuarry_transcript_3000-T1, internal, 200240, 200404
Valid prediction for GeneMark_model.3929_t
Valid prediction for snap_scaffold_1-snap.3525-T1
Valid prediction for snap_scaffold_1-snap.3523-T1
Valid prediction for GeneMark_model.3952_t
Valid prediction for snap_scaffold_1-snap.3511-T1
Valid prediction for snap_scaffold_1-snap.3519-T1
Valid prediction for snap_scaffold_1-snap.3509-T1
Valid prediction for GeneMark_model.3944_t
Valid prediction for GeneMark_model.3956_t
Valid prediction for GeneMark_model.3904_t
Valid prediction for GlimmerHMM_glimmerT_2602-T1
Valid prediction for snap_scaffold_1-snap.3497-T1
Valid prediction for snap_scaffold_1-snap.3488-T1
Valid prediction for snap_scaffold_1-snap.3513-T1
Valid prediction for GeneMark_model.3933_t
Valid prediction for GlimmerHMM_glimmerT_2623-T1
Valid prediction for GeneMark_model.3910_t
Valid prediction for GeneMark_model.3939_t
Valid prediction for GeneMark_model.3954_t
Valid prediction for GlimmerHMM_glimmerT_2612-T1
Valid prediction for snap_scaffold_1-snap.3495-T1
Valid prediction for GlimmerHMM_glimmerT_2604-T1
Valid prediction for Augustus_model.g1874.t1
Valid prediction for snap_scaffold_1-snap.3493-T1
Valid prediction for snap_scaffold_1-snap.3506-T1
Valid prediction for Augustus_model.g1861.t1
Valid prediction for snap_scaffold_1-snap.3496-T1
Valid prediction for GeneMark_model.3896_t
Valid prediction for Augustus_model.g1862.t1
Valid prediction for snap_scaffold_1-snap.3521-T1
Valid prediction for GeneMark_model.3947_t
Valid prediction for Augustus_model.g1860.t1
Valid prediction for GeneMark_model.3901_t
Valid prediction for snap_scaffold_1-snap.3535-T1
Valid prediction for GeneMark_model.3921_t
Valid prediction for snap_scaffold_1-snap.3503-T1
Valid prediction for GlimmerHMM_glimmerT_2605-T1
Valid prediction for GeneMark_model.3924_t
Valid prediction for snap_scaffold_1-snap.3499-T1
Valid prediction for Augustus_model.g1873.t1
Valid prediction for GeneMark_model.3926_t
Valid prediction for GeneMark_model.3891_t
Valid prediction for snap_scaffold_1-snap.3514-T1
Couldn't classify 202115, 202218
Sorry, prediction pasa_asmbl_2565.p1 fails validation.
(GCA)	 CT	202115-202218	GT	AAG
(CCA)	 AG	203182-203350	GT	CTG
(ATC)	 AG	204918-205007	GT	ACG
(ATC)	 AG	205622-205692	GT	AAG
(GAC)	 AG	205905-206007	GT	AAG
(GGC)	 AG	208170-208286	CA	GAC
-recovered pasa_asmbl_2565.p1, terminal, 208170, 208286
-recovered pasa_asmbl_2565.p1, internal, 203182, 203350
-recovered pasa_asmbl_2565.p1, internal, 204918, 205007
-recovered pasa_asmbl_2565.p1, internal, 205622, 205692
-recovered pasa_asmbl_2565.p1, internal, 205905, 206007
Valid prediction for snap_scaffold_1-snap.3533-T1
Valid prediction for GeneMark_model.3937_t
Valid prediction for snap_scaffold_1-snap.3529-T1
Valid prediction for GeneMark_model.3913_t
Valid prediction for GlimmerHMM_glimmerT_2618-T1
Valid prediction for snap_scaffold_1-snap.3534-T1
Valid prediction for GeneMark_model.3957_t
Valid prediction for snap_scaffold_1-snap.3492-T1
Valid prediction for GeneMark_model.3935_t
Valid prediction for GeneMark_model.3946_t
Valid prediction for GeneMark_model.3940_t
Valid prediction for GlimmerHMM_glimmerT_2599-T1
Valid prediction for GeneMark_model.3919_t
Valid prediction for GeneMark_model.3931_t
Valid prediction for GeneMark_model.3912_t
Valid prediction for GeneMark_model.3923_t
Valid prediction for snap_scaffold_1-snap.3487-T1
Valid prediction for GlimmerHMM_glimmerT_2603-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_2611-T1
Valid prediction for GeneMark_model.3951_t
Valid prediction for GeneMark_model.3916_t
Valid prediction for snap_scaffold_1-snap.3491-T1
Valid prediction for snap_scaffold_1-snap.3500-T1
Valid prediction for snap_scaffold_1-snap.3508-T1
Valid prediction for GlimmerHMM_glimmerT_2606-T1
Valid prediction for GlimmerHMM_glimmerT_2607-T1
Couldn't classify 34750, 34770
Sorry, prediction pasa_asmbl_1287.p1 fails validation.
(GAC)	 AT	34750-34770	GT	AGG
(GAC)	 AG	34871-34944	GT	CAG
(CAT)	 AG	35243-35301	GT	CGG
(ACG)	 AG	35748-35868	GT	AGG
(GTG)	 AG	36539-36669	GT	CGG
(CGA)	 AG	37355-37422	GT	TGG
(AGG)	 AG	38642-38788	TT	GAT
-recovered pasa_asmbl_1287.p1, terminal, 38642, 38788
-recovered pasa_asmbl_1287.p1, internal, 34871, 34944
-recovered pasa_asmbl_1287.p1, internal, 35243, 35301
-recovered pasa_asmbl_1287.p1, internal, 35748, 35868
-recovered pasa_asmbl_1287.p1, internal, 36539, 36669
-recovered pasa_asmbl_1287.p1, internal, 37355, 37422
Valid prediction for GlimmerHMM_glimmerT_2621-T1
Valid prediction for snap_scaffold_1-snap.3528-T1
Valid prediction for snap_scaffold_1-snap.3504-T1
Valid prediction for snap_scaffold_1-snap.3516-T1
Valid prediction for GlimmerHMM_glimmerT_2608-T1
Couldn't classify 53976, 54077
Couldn't classify 59069, 59201
Sorry, prediction pasa_asmbl_1300.p1 fails validation.
(CAG)	 TG	53976-54077	GT	TGG
(GCG)	 AG	54323-54429	GT	TGG
(GTG)	 AG	54771-54910	GT	CGG
(CTG)	 AG	55382-55544	GT	GGG
(GTA)	 AG	56144-56370	GT	CGG
(ACC)	 AG	56738-56886	GT	CTG
(ACG)	 AG	57129-57257	GT	AGG
(AAT)	 AG	57649-57924	GT	AGG
(TCT)	 AG	58336-58502	GT	AGG
(CAC)	 AG	59069-59201	AG	AGA
-recovered pasa_asmbl_1300.p1, internal, 54323, 54429
-recovered pasa_asmbl_1300.p1, internal, 54771, 54910
-recovered pasa_asmbl_1300.p1, internal, 55382, 55544
-recovered pasa_asmbl_1300.p1, internal, 56144, 56370
-recovered pasa_asmbl_1300.p1, internal, 56738, 56886
-recovered pasa_asmbl_1300.p1, internal, 57129, 57257
-recovered pasa_asmbl_1300.p1, internal, 57649, 57924
-recovered pasa_asmbl_1300.p1, internal, 58336, 58502
Valid prediction for HiQ_model.g1871.t1
Valid prediction for GeneMark_model.3895_t
Valid prediction for GeneMark_model.3922_t
Valid prediction for CodingQuarry_transcript_2996-T1
Valid prediction for GlimmerHMM_glimmerT_2619-T1
Valid prediction for GeneMark_model.3903_t
Valid prediction for GeneMark_model.3934_t
Valid prediction for GlimmerHMM_glimmerT_2610-T1
Valid prediction for HiQ_model.g1870.t1
Valid prediction for HiQ_model.g1869.t1
Valid prediction for GeneMark_model.3950_t
Couldn't classify 51913, 52013
Couldn't classify 52551, 52611
Sorry, prediction pasa_asmbl_1133.p1 fails validation.
(ATG)	 AT	43222-43387	GT	GGG
(AGT)	 AG	45544-45605	GT	AGG
(CTG)	 AG	48541-48627	GT	GGG
(GCC)	 AG	49212-49413	GT	AGG
(AGT)	 AG	49921-50009	GT	AGG
(GTC)	 AG	50358-50444	GT	AGG
(GGA)	 AG	51074-51193	GT	AGG
(GCA)	 AG	51913-52013	AT	TTA
(TTA)	 AC	52551-52611	AC	GTA
-recovered pasa_asmbl_1133.p1, initial, 43222, 43387
-recovered pasa_asmbl_1133.p1, internal, 45544, 45605
-recovered pasa_asmbl_1133.p1, internal, 48541, 48627
-recovered pasa_asmbl_1133.p1, internal, 49212, 49413
-recovered pasa_asmbl_1133.p1, internal, 49921, 50009
-recovered pasa_asmbl_1133.p1, internal, 50358, 50444
-recovered pasa_asmbl_1133.p1, internal, 51074, 51193
Valid prediction for GeneMark_model.3925_t
Valid prediction for GeneMark_model.3945_t
Valid prediction for GeneMark_model.3936_t
Valid prediction for GeneMark_model.3899_t
Valid prediction for pasa_asmbl_1303.p1
Valid prediction for GlimmerHMM_glimmerT_2613-T1
Valid prediction for GlimmerHMM_glimmerT_2601-T1
Valid prediction for GeneMark_model.3902_t
Valid prediction for GeneMark_model.3948_t
Valid prediction for GeneMark_model.3911_t
Valid prediction for snap_scaffold_1-snap.3522-T1
Valid prediction for GeneMark_model.3914_t
Valid prediction for GeneMark_model.3955_t
Valid prediction for GeneMark_model.3900_t
Valid prediction for snap_scaffold_1-snap.3510-T1
Valid prediction for GeneMark_model.3920_t
Valid prediction for GeneMark_model.3953_t
Valid prediction for GeneMark_model.3893_t
Valid prediction for GeneMark_model.3932_t
Valid prediction for snap_scaffold_1-snap.3518-T1
Valid prediction for Augustus_model.g1859.t1
Valid prediction for GeneMark_model.3905_t
Valid prediction for snap_scaffold_1-snap.3502-T1
Valid prediction for GlimmerHMM_glimmerT_2615-T1
Valid prediction for GeneMark_model.3938_t
Couldn't classify 75880, 77052
Sorry, prediction pasa_asmbl_1132.p1 fails validation.
(GCC)	 AG	75880-77052	AA	GCA
Valid prediction for GeneMark_model.3890_t
Valid prediction for Augustus_model.g1864.t1
Valid prediction for GeneMark_model.3943_t
Valid prediction for GeneMark_model.3892_t
Valid prediction for snap_scaffold_1-snap.3494-T1
Couldn't classify 25521, 25613
Sorry, prediction pasa_asmbl_1136.p1 fails validation.
(ATG)	 AG	20603-20741	GT	AGG
(GAG)	 AG	23161-23233	GT	GAG
(GGA)	 AG	24855-24909	GT	AGG
(ACG)	 AG	25521-25613	AA	CCA
-recovered pasa_asmbl_1136.p1, initial, 20603, 20741
add_exon() Sorry, pasa_asmbl_1136.p1 20603-20741-terminal-3 is invalid.
-recovered pasa_asmbl_1136.p1, terminal, 20603, 20741
-recovered pasa_asmbl_1136.p1, internal, 20603, 20741
-recovered pasa_asmbl_1136.p1, internal, 23161, 23233
-recovered pasa_asmbl_1136.p1, internal, 24855, 24909
Valid prediction for snap_scaffold_1-snap.3489-T1
Valid prediction for CodingQuarry_transcript_2997-T1
Valid prediction for GeneMark_model.3941_t
Valid prediction for GlimmerHMM_glimmerT_2609-T1
Valid prediction for HiQ_model.g1868.t1
Valid prediction for snap_scaffold_1-snap.3498-T1
Valid prediction for snap_scaffold_1-snap.3507-T1
Valid prediction for Augustus_model.g1865.t1
Valid prediction for Augustus_model.g1872.t1
Valid prediction for CodingQuarry_transcript_2999-T1
Valid prediction for snap_scaffold_1-snap.3512-T1
Valid prediction for GlimmerHMM_glimmerT_2616-T1
Valid prediction for snap_scaffold_1-snap.3524-T1
Valid prediction for GeneMark_model.3908_t
Valid prediction for GeneMark_model.3918_t
Valid prediction for GlimmerHMM_glimmerT_2600-T1
Valid prediction for Augustus_model.g1863.t1
Valid prediction for HiQ_model.g1866.t1
Valid prediction for snap_scaffold_1-snap.3515-T1
Valid prediction for CodingQuarry_transcript_2998-T1
Valid prediction for GeneMark_model.3906_t
Valid prediction for Augustus_model.g1867.t1
Valid prediction for GlimmerHMM_glimmerT_2617-T1
Valid prediction for GeneMark_model.3909_t
Valid prediction for snap_scaffold_1-snap.3490-T1
Valid prediction for GlimmerHMM_glimmerT_2614-T1
Valid prediction for snap_scaffold_1-snap.3531-T1
Valid prediction for GeneMark_model.3897_t
Valid prediction for GeneMark_model.3930_t
Valid prediction for snap_scaffold_1-snap.3520-T1
Valid prediction for GeneMark_model.3928_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17825, rend_intergenic: 9870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32493, rend_intergenic: 29810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44406, rend_intergenic: 33669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52190, rend_intergenic: 46121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59128, rend_intergenic: 56197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69871, rend_intergenic: 64102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75166, rend_intergenic: 73122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76661, rend_intergenic: 76446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78458, rend_intergenic: 76691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90603, rend_intergenic: 84501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105732, rend_intergenic: 95350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110702, rend_intergenic: 108852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120152, rend_intergenic: 110773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140697, rend_intergenic: 139410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143786, rend_intergenic: 141326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154918, rend_intergenic: 152316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167493, rend_intergenic: 156605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185996, rend_intergenic: 169838  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187821, rend_intergenic: 186602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198525, rend_intergenic: 197254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 211531
-exon list size: 870


building trellis

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44.4    
44.5    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.7    
99.8    
99.9    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 17825, rend_intergenic: 9870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32493, rend_intergenic: 29810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44406, rend_intergenic: 33669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52190, rend_intergenic: 46121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59128, rend_intergenic: 56197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69871, rend_intergenic: 64102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75166, rend_intergenic: 73122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76661, rend_intergenic: 76446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78458, rend_intergenic: 76691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90603, rend_intergenic: 84501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105732, rend_intergenic: 95350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110702, rend_intergenic: 108852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120152, rend_intergenic: 110773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140697, rend_intergenic: 139410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143786, rend_intergenic: 141326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154918, rend_intergenic: 152316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167493, rend_intergenic: 156605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185996, rend_intergenic: 169838  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187821, rend_intergenic: 186602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198525, rend_intergenic: 197254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14182
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support