-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_18520360-18687407

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_2569-T1
Valid prediction for GlimmerHMM_glimmerT_2564-T1
Valid prediction for GeneMark_model.3788_t
Valid prediction for snap_scaffold_1-snap.3429-T1
Valid prediction for GeneMark_model.3805_t
Valid prediction for snap_scaffold_1-snap.3418-T1
Valid prediction for GlimmerHMM_glimmerT_2560-T1
Valid prediction for GeneMark_model.3828_t
Valid prediction for GeneMark_model.3786_t
Valid prediction for GlimmerHMM_glimmerT_2562-T1
Valid prediction for GeneMark_model.3803_t
Valid prediction for Augustus_model.g1844.t1
Valid prediction for snap_scaffold_1-snap.3411-T1
Valid prediction for GeneMark_model.3802_t
Valid prediction for snap_scaffold_1-snap.3407-T1
Valid prediction for GlimmerHMM_glimmerT_2571-T1
Valid prediction for GeneMark_model.3787_t
Valid prediction for Augustus_model.g1843.t1
Valid prediction for Augustus_model.g1845.t1
Valid prediction for snap_scaffold_1-snap.3409-T1
Valid prediction for snap_scaffold_1-snap.3441-T1
Valid prediction for GeneMark_model.3811_t
Valid prediction for snap_scaffold_1-snap.3423-T1
Valid prediction for snap_scaffold_1-snap.3413-T1
Valid prediction for snap_scaffold_1-snap.3432-T1
Valid prediction for GlimmerHMM_glimmerT_2563-T1
Valid prediction for GeneMark_model.3818_t
Valid prediction for snap_scaffold_1-snap.3439-T1
Valid prediction for GeneMark_model.3830_t
Valid prediction for GeneMark_model.3836_t
Valid prediction for GeneMark_model.3807_t
Valid prediction for snap_scaffold_1-snap.3425-T1
Valid prediction for GeneMark_model.3822_t
Valid prediction for GlimmerHMM_glimmerT_2561-T1
Valid prediction for GeneMark_model.3799_t
Valid prediction for GeneMark_model.3798_t
Valid prediction for GeneMark_model.3813_t
Valid prediction for snap_scaffold_1-snap.3422-T1
Valid prediction for GeneMark_model.3794_t
Valid prediction for snap_scaffold_1-snap.3404-T1
Valid prediction for snap_scaffold_1-snap.3412-T1
Valid prediction for GeneMark_model.3834_t
Valid prediction for Augustus_model.g1848.t1
Valid prediction for GeneMark_model.3826_t
Valid prediction for snap_scaffold_1-snap.3442-T1
Valid prediction for GeneMark_model.3815_t
Valid prediction for snap_scaffold_1-snap.3436-T1
Valid prediction for GlimmerHMM_glimmerT_2558-T1
Valid prediction for GeneMark_model.3791_t
Valid prediction for snap_scaffold_1-snap.3434-T1
Valid prediction for snap_scaffold_1-snap.3445-T1
Valid prediction for snap_scaffold_1-snap.3420-T1
Valid prediction for GlimmerHMM_glimmerT_2566-T1
Valid prediction for snap_scaffold_1-snap.3417-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.3824_t
Valid prediction for GeneMark_model.3820_t
Valid prediction for snap_scaffold_1-snap.3427-T1
Valid prediction for GlimmerHMM_glimmerT_2559-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.3832_t
Valid prediction for GeneMark_model.3785_t
Valid prediction for GlimmerHMM_glimmerT_2556-T1
Valid prediction for GeneMark_model.3795_t
Valid prediction for GeneMark_model.3812_t
Valid prediction for GeneMark_model.3827_t
Valid prediction for GlimmerHMM_glimmerT_2555-T1
Valid prediction for Augustus_model.g1842.t1
Valid prediction for GeneMark_model.3809_t
Valid prediction for GlimmerHMM_glimmerT_2554-T1
Valid prediction for GeneMark_model.3816_t
Valid prediction for snap_scaffold_1-snap.3426-T1
Valid prediction for snap_scaffold_1-snap.3438-T1
Valid prediction for GeneMark_model.3835_t
Valid prediction for snap_scaffold_1-snap.3435-T1
Valid prediction for GeneMark_model.3821_t
Valid prediction for snap_scaffold_1-snap.3419-T1
Valid prediction for snap_scaffold_1-snap.3403-T1
Valid prediction for GlimmerHMM_glimmerT_2572-T1
Valid prediction for GeneMark_model.3833_t
Valid prediction for Augustus_model.g1841.t1
Valid prediction for snap_scaffold_1-snap.3437-T1
Valid prediction for snap_scaffold_1-snap.3402-T1
Valid prediction for GeneMark_model.3814_t
Valid prediction for snap_scaffold_1-snap.3446-T1
Valid prediction for GlimmerHMM_glimmerT_2565-T1
Valid prediction for GeneMark_model.3792_t
Valid prediction for GlimmerHMM_glimmerT_2557-T1
Valid prediction for GeneMark_model.3804_t
Valid prediction for GeneMark_model.3825_t
Valid prediction for GeneMark_model.3810_t
Valid prediction for snap_scaffold_1-snap.3416-T1
Valid prediction for snap_scaffold_1-snap.3431-T1
Valid prediction for Augustus_model.g1840.t1
Valid prediction for GlimmerHMM_glimmerT_2567-T1
Valid prediction for snap_scaffold_1-snap.3405-T1
Valid prediction for snap_scaffold_1-snap.3421-T1
Valid prediction for snap_scaffold_1-snap.3408-T1
Valid prediction for GeneMark_model.3793_t
Valid prediction for snap_scaffold_1-snap.3443-T1
Valid prediction for GeneMark_model.3831_t
Valid prediction for snap_scaffold_1-snap.3414-T1
Valid prediction for GeneMark_model.3801_t
Valid prediction for GeneMark_model.3800_t
Valid prediction for GlimmerHMM_glimmerT_2570-T1
Valid prediction for Augustus_model.g1849.t1
Valid prediction for GeneMark_model.3808_t
Valid prediction for snap_scaffold_1-snap.3406-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.3797_t
Valid prediction for snap_scaffold_1-snap.3428-T1
Valid prediction for GeneMark_model.3829_t
Valid prediction for snap_scaffold_1-snap.3433-T1
Valid prediction for snap_scaffold_1-snap.3440-T1
Valid prediction for GeneMark_model.3790_t
Valid prediction for snap_scaffold_1-snap.3444-T1
Valid prediction for GeneMark_model.3806_t
Valid prediction for snap_scaffold_1-snap.3415-T1
Valid prediction for GeneMark_model.3819_t
Valid prediction for GeneMark_model.3817_t
Valid prediction for snap_scaffold_1-snap.3430-T1
Valid prediction for Augustus_model.g1847.t1
Valid prediction for Augustus_model.g1846.t1
Valid prediction for snap_scaffold_1-snap.3410-T1
Valid prediction for GeneMark_model.3789_t
Valid prediction for snap_scaffold_1-snap.3424-T1
Valid prediction for GeneMark_model.3796_t
Valid prediction for GeneMark_model.3823_t
Valid prediction for GlimmerHMM_glimmerT_2568-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26213, rend_intergenic: 20564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30595, rend_intergenic: 27373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40032, rend_intergenic: 34024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60626, rend_intergenic: 58060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63754, rend_intergenic: 60942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81026, rend_intergenic: 64679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81714, rend_intergenic: 81185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85956, rend_intergenic: 82143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98753, rend_intergenic: 95757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112919, rend_intergenic: 109812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113289, rend_intergenic: 113059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115763, rend_intergenic: 113758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119803, rend_intergenic: 117932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122733, rend_intergenic: 120608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125025, rend_intergenic: 122992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143000, rend_intergenic: 129182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145989, rend_intergenic: 143318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153703, rend_intergenic: 150625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 167048
-exon list size: 730


building trellis

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-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 26213, rend_intergenic: 20564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30595, rend_intergenic: 27373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40032, rend_intergenic: 34024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60626, rend_intergenic: 58060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63754, rend_intergenic: 60942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81026, rend_intergenic: 64679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81714, rend_intergenic: 81185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85956, rend_intergenic: 82143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98753, rend_intergenic: 95757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112919, rend_intergenic: 109812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113289, rend_intergenic: 113059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115763, rend_intergenic: 113758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119803, rend_intergenic: 117932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122733, rend_intergenic: 120608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125025, rend_intergenic: 122992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143000, rend_intergenic: 129182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145989, rend_intergenic: 143318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153703, rend_intergenic: 150625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support