-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_16717573-16905687

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g1675.t1
Valid prediction for snap_scaffold_1-snap.3015-T1
Valid prediction for Augustus_model.g1666.t1
Valid prediction for GeneMark_model.3296_t
Valid prediction for GeneMark_model.3285_t
Valid prediction for HiQ_model.g1658.t1
Valid prediction for GlimmerHMM_glimmerT_2301-T1
Valid prediction for snap_scaffold_1-snap.2992-T1
Valid prediction for GlimmerHMM_glimmerT_2304-T1
Valid prediction for CodingQuarry_transcript_2961-T1
Valid prediction for GlimmerHMM_glimmerT_2276-T1
Couldn't classify 140546, 140590
Sorry, prediction pasa_asmbl_2492.p1 fails validation.
(ATG)	 AG	139471-139602	GT	AGG
(CTG)	 AG	139695-139874	GT	AGG
(ATT)	 AG	140259-140333	GT	CTG
(ATC)	 AG	140546-140590	AC	AGA
-recovered pasa_asmbl_2492.p1, initial, 139471, 139602
-recovered pasa_asmbl_2492.p1, internal, 139471, 139602
-recovered pasa_asmbl_2492.p1, internal, 139695, 139874
-recovered pasa_asmbl_2492.p1, internal, 140259, 140333
Valid prediction for GlimmerHMM_glimmerT_2302-T1
Valid prediction for GeneMark_model.3282_t
Valid prediction for Augustus_model.g1682.t1
Valid prediction for snap_scaffold_1-snap.3011-T1
Valid prediction for GlimmerHMM_glimmerT_2274-T1
Valid prediction for snap_scaffold_1-snap.2994-T1
Valid prediction for snap_scaffold_1-snap.3029-T1
Valid prediction for Augustus_model.g1681.t1
Valid prediction for GlimmerHMM_glimmerT_2296-T1
Valid prediction for GlimmerHMM_glimmerT_2303-T1
Valid prediction for Augustus_model.g1665.t1
Valid prediction for HiQ_model.g1677.t1
Valid prediction for GeneMark_model.3265_t
Valid prediction for GeneMark_model.3273_t
Valid prediction for HiQ_model.g1671.t1
Valid prediction for GeneMark_model.3259_t
Valid prediction for Augustus_model.g1669.t1
Valid prediction for GeneMark_model.3289_t
Valid prediction for GlimmerHMM_glimmerT_2279-T1
Valid prediction for GlimmerHMM_glimmerT_2291-T1
Valid prediction for CodingQuarry_transcript_2962-T1
Couldn't classify 5064, 5417
Sorry, prediction pasa_asmbl_2480.p3 fails validation.
(GAG)	 GA	5064-5417	GA	GAG
Valid prediction for snap_scaffold_1-snap.3032-T1
Valid prediction for GeneMark_model.3267_t
Valid prediction for snap_scaffold_1-snap.3005-T1
Valid prediction for Augustus_model.g1678.t1
Valid prediction for snap_scaffold_1-snap.2997-T1
Valid prediction for snap_scaffold_1-snap.3001-T1
Valid prediction for snap_scaffold_1-snap.3006-T1
Valid prediction for GeneMark_model.3261_t
Valid prediction for snap_scaffold_1-snap.3031-T1
Valid prediction for GeneMark_model.3288_t
Valid prediction for Augustus_model.g1668.t1
Valid prediction for GeneMark_model.3257_t
Valid prediction for pasa_asmbl_2489.p1
Valid prediction for snap_scaffold_1-snap.3004-T1
Valid prediction for GeneMark_model.3294_t
Valid prediction for GeneMark_model.3290_t
Couldn't classify 19297, 19431
Sorry, prediction pasa_asmbl_2481.p1 fails validation.
(ATG)	 GG	13429-13517	GT	AAG
(AGA)	 AG	13742-13820	GT	TGG
(GCT)	 AG	13929-13952	GT	AGG
(GAG)	 AG	14059-14112	GT	AGG
(GTG)	 AG	14414-14563	GT	AGG
(GAC)	 AG	14866-14929	GT	AGG
(GAC)	 AG	15154-15197	GT	AGG
(GTG)	 AG	15422-15547	GT	AGG
(GTG)	 AG	15788-15933	GT	AAG
(TCC)	 AG	17707-17836	GT	TGG
(TCC)	 AG	19297-19431	AG	CCA
-recovered pasa_asmbl_2481.p1, initial, 13429, 13517
-recovered pasa_asmbl_2481.p1, internal, 13742, 13820
-recovered pasa_asmbl_2481.p1, internal, 13929, 13952
-recovered pasa_asmbl_2481.p1, internal, 14059, 14112
-recovered pasa_asmbl_2481.p1, internal, 14414, 14563
-recovered pasa_asmbl_2481.p1, internal, 14866, 14929
-recovered pasa_asmbl_2481.p1, internal, 15154, 15197
-recovered pasa_asmbl_2481.p1, internal, 15422, 15547
-recovered pasa_asmbl_2481.p1, internal, 15788, 15933
-recovered pasa_asmbl_2481.p1, internal, 17707, 17836
Valid prediction for snap_scaffold_1-snap.3013-T1
Valid prediction for GlimmerHMM_glimmerT_2297-T1
Valid prediction for snap_scaffold_1-snap.2990-T1
Valid prediction for GeneMark_model.3272_t
Valid prediction for GlimmerHMM_glimmerT_2277-T1
Valid prediction for snap_scaffold_1-snap.2995-T1
Valid prediction for snap_scaffold_1-snap.3024-T1
Valid prediction for GeneMark_model.3276_t
Valid prediction for snap_scaffold_1-snap.2989-T1
Valid prediction for Augustus_model.g1680.t1
Valid prediction for GlimmerHMM_glimmerT_2299-T1
Valid prediction for snap_scaffold_1-snap.3003-T1
Valid prediction for snap_scaffold_1-snap.3000-T1
Valid prediction for GeneMark_model.3292_t
Valid prediction for snap_scaffold_1-snap.3028-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_1-snap.3026-T1
Valid prediction for GlimmerHMM_glimmerT_2284-T1
Valid prediction for snap_scaffold_1-snap.3009-T1
Couldn't classify 19732, 19857
Sorry, prediction pasa_asmbl_2485.p1 fails validation.
(TGC)	 TC	19732-19857	GT	TGG
(GTG)	 AG	19942-20160	GT	AGG
(AAT)	 AG	20244-20386	GT	GGG
(GAT)	 AG	20569-20728	GT	AGG
(GCA)	 AG	20907-21036	GT	CGG
(TGC)	 AG	21189-21350	GT	AGG
(TGT)	 AG	21815-21979	GT	AGG
(TGC)	 AG	22100-22302	GT	AAG
(GCT)	 AG	22530-22613	GT	AGG
(GCC)	 AG	22743-22833	GT	TGG
(GGA)	 AG	22954-23054	AG	AGA
-recovered pasa_asmbl_2485.p1, terminal, 22954, 23054
-recovered pasa_asmbl_2485.p1, internal, 19942, 20160
-recovered pasa_asmbl_2485.p1, internal, 20244, 20386
-recovered pasa_asmbl_2485.p1, internal, 20569, 20728
-recovered pasa_asmbl_2485.p1, internal, 20907, 21036
-recovered pasa_asmbl_2485.p1, internal, 21189, 21350
-recovered pasa_asmbl_2485.p1, internal, 21815, 21979
-recovered pasa_asmbl_2485.p1, internal, 22100, 22302
-recovered pasa_asmbl_2485.p1, internal, 22530, 22613
-recovered pasa_asmbl_2485.p1, internal, 22743, 22833
Valid prediction for snap_scaffold_1-snap.3027-T1
Valid prediction for Augustus_model.g1663.t1
Valid prediction for GeneMark_model.3255_t
Couldn't classify 154122, 154217
Couldn't classify 156341, 156371
Sorry, prediction pasa_asmbl_2495.p1 fails validation.
(GTT)	 AG	154122-154217	GT	CGG
(GTG)	 AG	155493-155579	GT	AGG
(CTT)	 AG	155768-155827	GT	CGG
(GTG)	 AG	155951-156084	GT	ACG
(TGA)	 AG	156341-156371	GC	GAG
-recovered pasa_asmbl_2495.p1, internal, 154122, 154217
-recovered pasa_asmbl_2495.p1, internal, 155493, 155579
-recovered pasa_asmbl_2495.p1, internal, 155768, 155827
-recovered pasa_asmbl_2495.p1, internal, 155951, 156084
-recovered pasa_asmbl_2495.p1, internal, 156341, 156371
Valid prediction for GlimmerHMM_glimmerT_2287-T1
Valid prediction for HiQ_model.g1659.t1
Valid prediction for GlimmerHMM_glimmerT_2275-T1
Valid prediction for snap_scaffold_1-snap.3019-T1
Valid prediction for pasa_asmbl_2490.p1
Valid prediction for GlimmerHMM_glimmerT_2289-T1
Valid prediction for GeneMark_model.3269_t
Valid prediction for snap_scaffold_1-snap.3023-T1
Valid prediction for GlimmerHMM_glimmerT_2286-T1
Valid prediction for Augustus_model.g1661.t1
Valid prediction for snap_scaffold_1-snap.3022-T1
Couldn't classify 82043, 82732
Sorry, prediction pasa_asmbl_2488.p1 fails validation.
(CTC)	 CA	82043-82732	GT	AGG
(ATT)	 AG	84397-84834	AC	GAA
-recovered pasa_asmbl_2488.p1, terminal, 84397, 84834
Valid prediction for snap_scaffold_1-snap.3020-T1
Valid prediction for Augustus_model.g1679.t1
Valid prediction for GlimmerHMM_glimmerT_2285-T1
Valid prediction for GeneMark_model.3279_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.3025-T1
Valid prediction for snap_scaffold_1-snap.3034-T1
Valid prediction for snap_scaffold_1-snap.3010-T1
Valid prediction for GeneMark_model.3262_t
Valid prediction for snap_scaffold_1-snap.2991-T1
Valid prediction for snap_scaffold_1-snap.3021-T1
Valid prediction for snap_scaffold_1-snap.3035-T1
Valid prediction for GeneMark_model.3254_t
Valid prediction for snap_scaffold_1-snap.2993-T1
Valid prediction for snap_scaffold_1-snap.3014-T1
Valid prediction for GeneMark_model.3295_t
Valid prediction for snap_scaffold_1-snap.3018-T1
Valid prediction for snap_scaffold_1-snap.3016-T1
Valid prediction for GeneMark_model.3278_t
Valid prediction for snap_scaffold_1-snap.3007-T1
Valid prediction for GeneMark_model.3275_t
Valid prediction for snap_scaffold_1-snap.3030-T1
Valid prediction for Augustus_model.g1667.t1
Valid prediction for pasa_asmbl_1016.p1
Valid prediction for GeneMark_model.3260_t
Valid prediction for GlimmerHMM_glimmerT_2300-T1
Valid prediction for GeneMark_model.3270_t
Valid prediction for GlimmerHMM_glimmerT_2305-T1
Valid prediction for Augustus_model.g1676.t1
Valid prediction for GeneMark_model.3268_t
Couldn't classify 67078, 67240
Sorry, prediction pasa_asmbl_1019.p1 fails validation.
(ATG)	 AG	66199-66328	GT	CGG
(GGA)	 AG	66489-66588	GT	TTG
(GTC)	 AG	66732-66884	GT	AGG
(GAT)	 AG	67078-67240	AG	CCA
-recovered pasa_asmbl_1019.p1, initial, 66199, 66328
-recovered pasa_asmbl_1019.p1, internal, 66199, 66328
-recovered pasa_asmbl_1019.p1, internal, 66489, 66588
-recovered pasa_asmbl_1019.p1, internal, 66732, 66884
Valid prediction for snap_scaffold_1-snap.2996-T1
Valid prediction for GeneMark_model.3283_t
Valid prediction for GlimmerHMM_glimmerT_2278-T1
Valid prediction for GeneMark_model.3281_t
Valid prediction for GeneMark_model.3293_t
Valid prediction for Augustus_model.g1672.t1
Valid prediction for GlimmerHMM_glimmerT_2293-T1
Valid prediction for snap_scaffold_1-snap.2999-T1
Valid prediction for HiQ_model.g1662.t1
Valid prediction for GlimmerHMM_glimmerT_2281-T1
Valid prediction for Augustus_model.g1683.t1
Valid prediction for GlimmerHMM_glimmerT_2292-T1
Valid prediction for GeneMark_model.3291_t
Valid prediction for GeneMark_model.3271_t
Valid prediction for GeneMark_model.3284_t
Valid prediction for GeneMark_model.3297_t
Valid prediction for GeneMark_model.3263_t
Valid prediction for Augustus_model.g1673.t1
Valid prediction for GlimmerHMM_glimmerT_2290-T1
Valid prediction for GlimmerHMM_glimmerT_2295-T1
Valid prediction for GlimmerHMM_glimmerT_2273-T1
Valid prediction for snap_scaffold_1-snap.3008-T1
Valid prediction for GlimmerHMM_glimmerT_2288-T1
Valid prediction for GeneMark_model.3264_t
Valid prediction for snap_scaffold_1-snap.3036-T1
Valid prediction for GlimmerHMM_glimmerT_2282-T1
Valid prediction for snap_scaffold_1-snap.3012-T1
Valid prediction for GeneMark_model.3258_t
Valid prediction for Augustus_model.g1660.t1
Valid prediction for GeneMark_model.3280_t
Valid prediction for snap_scaffold_1-snap.3017-T1
Valid prediction for snap_scaffold_1-snap.3002-T1
Valid prediction for Augustus_model.g1664.t1
Valid prediction for snap_scaffold_1-snap.3033-T1
Valid prediction for snap_scaffold_1-snap.2998-T1
Valid prediction for GlimmerHMM_glimmerT_2272-T1
Valid prediction for GeneMark_model.3286_t
Valid prediction for GeneMark_model.3274_t
Valid prediction for GlimmerHMM_glimmerT_2294-T1
Valid prediction for Augustus_model.g1674.t1
Valid prediction for CodingQuarry_transcript_2960-T1
Valid prediction for GeneMark_model.3266_t
Valid prediction for Augustus_model.g1670.t1
Valid prediction for GlimmerHMM_glimmerT_2283-T1
Valid prediction for GlimmerHMM_glimmerT_2298-T1
Valid prediction for snap_scaffold_1-snap.2988-T1
Valid prediction for GeneMark_model.3277_t
Valid prediction for GeneMark_model.3256_t
Valid prediction for GlimmerHMM_glimmerT_2280-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11256, rend_intergenic: 4770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12698, rend_intergenic: 11391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15088, rend_intergenic: 12866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15958, rend_intergenic: 15374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18400, rend_intergenic: 16637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37299, rend_intergenic: 29262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44029, rend_intergenic: 41098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52915, rend_intergenic: 46791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76301, rend_intergenic: 65238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82783, rend_intergenic: 79988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91082, rend_intergenic: 89303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104174, rend_intergenic: 91572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141902, rend_intergenic: 139471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165820, rend_intergenic: 160630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179509, rend_intergenic: 169262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 188115
-exon list size: 775


building trellis

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55.5    
55.6    
55.7    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
58.9    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.4    
63.6    
63.7    
63.8    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.2    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.9    
69.0    
69.1    
69.2    
69.4    
69.5    
69.6    
69.8    
69.9    
70.0    
70.1    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
71.9    
72.1    
72.2    
72.3    
72.5    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.6    
76.7    
76.8    
77.0    
77.1    
77.2    
77.3    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.9    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.1    
93.2    
93.3    
93.4    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 11256, rend_intergenic: 4770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12698, rend_intergenic: 11391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15088, rend_intergenic: 12866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15958, rend_intergenic: 15374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18400, rend_intergenic: 16637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37299, rend_intergenic: 29262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44029, rend_intergenic: 41098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52915, rend_intergenic: 46791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76301, rend_intergenic: 65238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82783, rend_intergenic: 79988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91082, rend_intergenic: 89303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104174, rend_intergenic: 91572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141902, rend_intergenic: 139471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165820, rend_intergenic: 160630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179509, rend_intergenic: 169262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support