-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_15504483-15680038

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.2956_t
Valid prediction for GlimmerHMM_glimmerT_2106-T1
Valid prediction for GeneMark_model.2957_t
Valid prediction for GeneMark_model.2961_t
Valid prediction for snap_scaffold_1-snap.2742-T1
Valid prediction for GeneMark_model.2951_t
Valid prediction for snap_scaffold_1-snap.2731-T1
Valid prediction for snap_scaffold_1-snap.2741-T1
Valid prediction for snap_scaffold_1-snap.2730-T1
Valid prediction for GeneMark_model.2963_t
Valid prediction for GeneMark_model.2947_t
Valid prediction for GeneMark_model.2964_t
Valid prediction for snap_scaffold_1-snap.2728-T1
Valid prediction for Augustus_model.g1545.t1
Valid prediction for GeneMark_model.2940_t
Valid prediction for GeneMark_model.2944_t
Valid prediction for snap_scaffold_1-snap.2749-T1
Valid prediction for GeneMark_model.2966_t
Valid prediction for snap_scaffold_1-snap.2734-T1
Valid prediction for Augustus_model.g1546.t1
Valid prediction for GeneMark_model.2946_t
Valid prediction for GlimmerHMM_glimmerT_2109-T1
Valid prediction for GlimmerHMM_glimmerT_2110-T1
Valid prediction for GlimmerHMM_glimmerT_2103-T1
Valid prediction for snap_scaffold_1-snap.2727-T1
Valid prediction for GeneMark_model.2942_t
Valid prediction for GeneMark_model.2968_t
Valid prediction for GeneMark_model.2954_t
Valid prediction for snap_scaffold_1-snap.2744-T1
Valid prediction for GlimmerHMM_glimmerT_2099-T1
Valid prediction for GlimmerHMM_glimmerT_2104-T1
Valid prediction for GeneMark_model.2937_t
Valid prediction for GeneMark_model.2955_t
Valid prediction for GeneMark_model.2967_t
Valid prediction for snap_scaffold_1-snap.2746-T1
Valid prediction for GlimmerHMM_glimmerT_2095-T1
Valid prediction for snap_scaffold_1-snap.2745-T1
Valid prediction for GeneMark_model.2949_t
Valid prediction for snap_scaffold_1-snap.2751-T1
Valid prediction for GeneMark_model.2935_t
Valid prediction for snap_scaffold_1-snap.2739-T1
Valid prediction for snap_scaffold_1-snap.2736-T1
Valid prediction for GeneMark_model.2938_t
Valid prediction for snap_scaffold_1-snap.2725-T1
Valid prediction for GeneMark_model.2939_t
Valid prediction for snap_scaffold_1-snap.2735-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.2750-T1
Valid prediction for GlimmerHMM_glimmerT_2107-T1
Valid prediction for snap_scaffold_1-snap.2729-T1
Valid prediction for GlimmerHMM_glimmerT_2105-T1
Valid prediction for GeneMark_model.2952_t
Valid prediction for snap_scaffold_1-snap.2737-T1
Valid prediction for GeneMark_model.2941_t
Valid prediction for GeneMark_model.2950_t
Valid prediction for GeneMark_model.2948_t
Valid prediction for GeneMark_model.2945_t
Valid prediction for GeneMark_model.2936_t
Valid prediction for GlimmerHMM_glimmerT_2112-T1
Valid prediction for snap_scaffold_1-snap.2732-T1
Valid prediction for snap_scaffold_1-snap.2733-T1
Valid prediction for GeneMark_model.2970_t
Valid prediction for snap_scaffold_1-snap.2743-T1
Valid prediction for GeneMark_model.2969_t
Valid prediction for snap_scaffold_1-snap.2740-T1
Valid prediction for GeneMark_model.2943_t
Valid prediction for GlimmerHMM_glimmerT_2096-T1
Valid prediction for GeneMark_model.2958_t
Valid prediction for GeneMark_model.2953_t
Valid prediction for GlimmerHMM_glimmerT_2094-T1
Valid prediction for GlimmerHMM_glimmerT_2108-T1
Valid prediction for GeneMark_model.2959_t
Valid prediction for GlimmerHMM_glimmerT_2111-T1
Valid prediction for Augustus_model.g1548.t1
Valid prediction for Augustus_model.g1547.t1
Valid prediction for GlimmerHMM_glimmerT_2098-T1
Valid prediction for snap_scaffold_1-snap.2747-T1
Valid prediction for snap_scaffold_1-snap.2726-T1
Valid prediction for GlimmerHMM_glimmerT_2113-T1
Valid prediction for GlimmerHMM_glimmerT_2101-T1
Valid prediction for GlimmerHMM_glimmerT_2100-T1
Valid prediction for GlimmerHMM_glimmerT_2102-T1
Valid prediction for Augustus_model.g1544.t1
Valid prediction for GeneMark_model.2962_t
Valid prediction for GeneMark_model.2960_t
Valid prediction for snap_scaffold_1-snap.2738-T1
Valid prediction for snap_scaffold_1-snap.2752-T1
Valid prediction for GeneMark_model.2965_t
Valid prediction for GlimmerHMM_glimmerT_2097-T1
Valid prediction for snap_scaffold_1-snap.2748-T1
Valid prediction for GeneMark_model.2934_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6385, rend_intergenic: 6106  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35793, rend_intergenic: 32966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51397, rend_intergenic: 42232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58684, rend_intergenic: 55846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67073, rend_intergenic: 61879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72973, rend_intergenic: 71921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76871, rend_intergenic: 73434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 175556
-exon list size: 401


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
2.0    
2.2    
2.5    
2.7    
3.0    
3.2    
3.5    
3.7    
4.0    
4.2    
4.5    
4.7    
5.0    
5.2    
5.5    
5.7    
6.0    
6.2    
6.5    
6.7    
6.9    
7.2    
7.4    
7.7    
7.9    
8.2    
8.4    
8.7    
8.9    
9.2    
9.4    
9.7    
9.9    
10.2    
10.4    
10.7    
10.9    
11.2    
11.4    
11.7    
11.9    
12.2    
12.4    
12.7    
12.9    
13.2    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.9    
15.1    
15.4    
15.6    
15.9    
16.1    
16.4    
16.6    
16.9    
17.1    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.9    
19.1    
19.4    
19.6    
19.9    
20.1    
20.3    
20.6    
20.8    
21.1    
21.3    
21.6    
21.8    
22.1    
22.3    
22.6    
22.8    
23.1    
23.3    
23.6    
23.8    
24.1    
24.3    
24.6    
24.8    
25.1    
25.3    
25.6    
25.8    
26.1    
26.3    
26.6    
26.8    
27.0    
27.3    
27.5    
27.8    
28.0    
28.3    
28.5    
28.8    
29.0    
29.3    
29.5    
29.8    
30.0    
30.3    
30.5    
30.8    
31.0    
31.3    
31.5    
31.8    
32.0    
32.3    
32.5    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.5    
34.7    
35.0    
35.2    
35.5    
35.7    
36.0    
36.2    
36.5    
36.7    
37.0    
37.2    
37.5    
37.7    
38.0    
38.2    
38.5    
38.7    
39.0    
39.2    
39.5    
39.7    
40.0    
40.2    
40.4    
40.7    
40.9    
41.2    
41.4    
41.7    
41.9    
42.2    
42.4    
42.7    
42.9    
43.2    
43.4    
43.7    
43.9    
44.2    
44.4    
44.7    
44.9    
45.2    
45.4    
45.7    
45.9    
46.2    
46.4    
46.7    
46.9    
47.1    
47.4    
47.6    
47.9    
48.1    
48.4    
48.6    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.4    
51.6    
51.9    
52.1    
52.4    
52.6    
52.9    
53.1    
53.3    
53.6    
53.8    
54.1    
54.3    
54.6    
54.8    
55.1    
55.3    
55.6    
55.8    
56.1    
56.3    
56.6    
56.8    
57.1    
57.3    
57.6    
57.8    
58.1    
58.3    
58.6    
58.8    
59.1    
59.3    
59.6    
59.8    
60.0    
60.3    
60.5    
60.8    
61.0    
61.3    
61.5    
61.8    
62.0    
62.3    
62.5    
62.8    
63.0    
63.3    
63.5    
63.8    
64.0    
64.3    
64.5    
64.8    
65.0    
65.3    
65.5    
65.8    
66.0    
66.3    
66.5    
66.7    
67.0    
67.2    
67.5    
67.7    
68.0    
68.2    
68.5    
68.7    
69.0    
69.2    
69.5    
69.7    
70.0    
70.2    
70.5    
70.7    
71.0    
71.2    
71.5    
71.7    
72.0    
72.2    
72.5    
72.7    
73.0    
73.2    
73.4    
73.7    
73.9    
74.2    
74.4    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.2    
76.4    
76.7    
76.9    
77.2    
77.4    
77.7    
77.9    
78.2    
78.4    
78.7    
78.9    
79.2    
79.4    
79.7    
79.9    
80.1    
80.4    
80.6    
80.9    
81.1    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.9    
83.1    
83.4    
83.6    
83.9    
84.1    
84.4    
84.6    
84.9    
85.1    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.6    
87.8    
88.1    
88.3    
88.6    
88.8    
89.1    
89.3    
89.6    
89.8    
90.1    
90.3    
90.6    
90.8    
91.1    
91.3    
91.6    
91.8    
92.1    
92.3    
92.6    
92.8    
93.1    
93.3    
93.5    
93.8    
94.0    
94.3    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.0    
96.3    
96.5    
96.8    
97.0    
97.3    
97.5    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 6385, rend_intergenic: 6106  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35793, rend_intergenic: 32966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51397, rend_intergenic: 42232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58684, rend_intergenic: 55846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67073, rend_intergenic: 61879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72973, rend_intergenic: 71921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76871, rend_intergenic: 73434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 165505 - 175556
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support