-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_14355295-14607310

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.2687_t
Valid prediction for GlimmerHMM_glimmerT_1940-T1
Valid prediction for pasa_asmbl_2372.p1
Valid prediction for GeneMark_model.2660_t
Valid prediction for CodingQuarry_transcript_2915-T1
Valid prediction for pasa_asmbl_2374.p1
Valid prediction for snap_scaffold_1-snap.2522-T1
Valid prediction for GeneMark_model.2658_t
Valid prediction for snap_scaffold_1-snap.2521-T1
Valid prediction for GeneMark_model.2701_t
Valid prediction for GeneMark_model.2668_t
Valid prediction for CodingQuarry_transcript_2906-T1
Valid prediction for GlimmerHMM_glimmerT_1943-T1
Valid prediction for GlimmerHMM_glimmerT_1941-T1
Valid prediction for CodingQuarry_transcript_2914-T1
Valid prediction for GlimmerHMM_glimmerT_1944-T1
Valid prediction for pasa_asmbl_2782.p1
Valid prediction for GeneMark_model.2699_t
Valid prediction for GeneMark_model.2657_t
Valid prediction for GeneMark_model.2675_t
Valid prediction for GeneMark_model.2672_t
Valid prediction for HiQ_model.g1440.t1
Valid prediction for GeneMark_model.2691_t
Valid prediction for snap_scaffold_1-snap.2485-T1
Valid prediction for snap_scaffold_1-snap.2484-T1
Valid prediction for GlimmerHMM_glimmerT_1953-T1
Valid prediction for GlimmerHMM_glimmerT_1930-T1
Valid prediction for snap_scaffold_1-snap.2497-T1
Valid prediction for GeneMark_model.2696_t
Valid prediction for GeneMark_model.2679_t
Valid prediction for pasa_asmbl_2370.p1
Valid prediction for GeneMark_model.2655_t
Valid prediction for GeneMark_model.2662_t
Valid prediction for GlimmerHMM_glimmerT_1929-T1
Valid prediction for snap_scaffold_1-snap.2487-T1
Valid prediction for Augustus_model.g1456.t1
Couldn't classify 1718, 1906
Sorry, prediction pasa_asmbl_2369.p1 fails validation.
(GAG)	 TA	1718-1906	GT	AGG
(AGT)	 AG	2081-2191	GT	AAG
(GCC)	 AG	2366-2776	GT	ATG
(ATA)	 AG	2864-2918	GT	GGG
(CCT)	 AG	3021-3166	GT	TGG
(AAT)	 AG	3256-3282	AG	GAA
-recovered pasa_asmbl_2369.p1, terminal, 3256, 3282
-recovered pasa_asmbl_2369.p1, internal, 2081, 2191
-recovered pasa_asmbl_2369.p1, internal, 2366, 2776
-recovered pasa_asmbl_2369.p1, internal, 2864, 2918
-recovered pasa_asmbl_2369.p1, internal, 3021, 3166
Valid prediction for GeneMark_model.2698_t
Valid prediction for GlimmerHMM_glimmerT_1939-T1
Valid prediction for snap_scaffold_1-snap.2500-T1
Valid prediction for GeneMark_model.2677_t
Valid prediction for snap_scaffold_1-snap.2519-T1
Valid prediction for GlimmerHMM_glimmerT_1956-T1
Valid prediction for snap_scaffold_1-snap.2499-T1
Valid prediction for snap_scaffold_1-snap.2483-T1
Valid prediction for HiQ_model.g1434.t1
Valid prediction for GeneMark_model.2676_t
Valid prediction for Augustus_model.g1443.t1
Valid prediction for HiQ_model.g1435.t1
Couldn't classify 97272, 97677
Sorry, prediction pasa_asmbl_2378.p1 fails validation.
(AGC)	 GC	97272-97677	GT	AGG
(AGG)	 AG	100558-100703	GT	TGG
(TCC)	 AG	102980-103105	GT	ACG
(GTT)	 AG	103764-104063	AG	GAA
-recovered pasa_asmbl_2378.p1, terminal, 103764, 104063
-recovered pasa_asmbl_2378.p1, internal, 100558, 100703
-recovered pasa_asmbl_2378.p1, internal, 102980, 103105
Valid prediction for GeneMark_model.2664_t
Valid prediction for GlimmerHMM_glimmerT_1927-T1
Valid prediction for snap_scaffold_1-snap.2488-T1
Valid prediction for GeneMark_model.2669_t
Valid prediction for snap_scaffold_1-snap.2507-T1
Valid prediction for GeneMark_model.2681_t
Valid prediction for snap_scaffold_1-snap.2502-T1
Valid prediction for snap_scaffold_1-snap.2496-T1
Valid prediction for GeneMark_model.2694_t
Valid prediction for snap_scaffold_1-snap.2503-T1
Valid prediction for snap_scaffold_1-snap.2516-T1
Valid prediction for snap_scaffold_1-snap.2525-T1
Valid prediction for GeneMark_model.2666_t
Valid prediction for Augustus_model.g1444.t1
Valid prediction for GeneMark_model.2659_t
Valid prediction for Augustus_model.g1446.t1
Valid prediction for HiQ_model.g1442.t1
Valid prediction for GlimmerHMM_glimmerT_1937-T1
Valid prediction for snap_scaffold_1-snap.2482-T1
Valid prediction for GeneMark_model.2683_t
Valid prediction for snap_scaffold_1-snap.2509-T1
Valid prediction for snap_scaffold_1-snap.2486-T1
Valid prediction for GlimmerHMM_glimmerT_1928-T1
Valid prediction for snap_scaffold_1-snap.2526-T1
Valid prediction for snap_scaffold_1-snap.2501-T1
Valid prediction for CodingQuarry_transcript_2908-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.2665_t
Valid prediction for snap_scaffold_1-snap.2505-T1
Valid prediction for GlimmerHMM_glimmerT_1951-T1
Valid prediction for GeneMark_model.2693_t
Valid prediction for GeneMark_model.2667_t
Valid prediction for Augustus_model.g1450.t1
Valid prediction for CodingQuarry_transcript_2913-T1
Valid prediction for GeneMark_model.2692_t
Valid prediction for GlimmerHMM_glimmerT_1950-T1
Valid prediction for snap_scaffold_1-snap.2524-T1
Valid prediction for snap_scaffold_1-snap.2529-T1
Valid prediction for snap_scaffold_1-snap.2515-T1
Valid prediction for CodingQuarry_transcript_2910-T1
Valid prediction for snap_scaffold_1-snap.2523-T1
Valid prediction for GeneMark_model.2690_t
Valid prediction for GlimmerHMM_glimmerT_1931-T1
Valid prediction for snap_scaffold_1-snap.2520-T1
Valid prediction for snap_scaffold_1-snap.2527-T1
Valid prediction for GeneMark_model.2688_t
Valid prediction for CodingQuarry_transcript_2907-T1
Valid prediction for snap_scaffold_1-snap.2510-T1
Couldn't classify 72336, 72483
Sorry, prediction pasa_asmbl_940.p1 fails validation.
(GTG)	 CG	72336-72483	GT	CAG
(CTT)	 AG	72652-72830	GT	AGG
(GGC)	 AG	72918-73142	GT	AGG
(AGC)	 AG	73277-73405	GT	AGG
(GAG)	 AG	73563-73703	CT	AGC
-recovered pasa_asmbl_940.p1, terminal, 73563, 73703
-recovered pasa_asmbl_940.p1, internal, 72652, 72830
-recovered pasa_asmbl_940.p1, internal, 72918, 73142
-recovered pasa_asmbl_940.p1, internal, 73277, 73405
Valid prediction for GeneMark_model.2684_t
Valid prediction for GeneMark_model.2682_t
Valid prediction for GeneMark_model.2700_t
Couldn't classify 20071, 23096
Sorry, prediction pasa_asmbl_950.p1 fails validation.
(ATG)	 AT	18435-18444	GT	AGG
(ATT)	 AG	20071-23096	AG	AAA
-recovered pasa_asmbl_950.p1, initial, 18435, 18444
Valid prediction for GeneMark_model.2678_t
Valid prediction for snap_scaffold_1-snap.2481-T1
Valid prediction for GlimmerHMM_glimmerT_1954-T1
Valid prediction for GeneMark_model.2670_t
Valid prediction for snap_scaffold_1-snap.2528-T1
Couldn't classify 242074, 242112
Sorry, prediction pasa_asmbl_915.p1 fails validation.
(CTG)	 TA	242074-242112	GT	GTG
(ATG)	 AG	244295-244639	GT	GGG
(GTT)	 AG	244750-244831	GT	TGG
(AAA)	 AG	245308-245498	GT	AGG
(ATA)	 AG	245625-245721	GT	TGG
(GTT)	 AG	245872-246034	GT	AGG
(GGT)	 AG	246337-246522	GT	AGG
(GTA)	 AG	246992-247082	GT	TGG
(TCT)	 AG	247210-247333	GT	AGG
(GAT)	 AG	247546-247754	CT	AGC
-recovered pasa_asmbl_915.p1, initial, 244295, 244639
-recovered pasa_asmbl_915.p1, terminal, 247546, 247754
-recovered pasa_asmbl_915.p1, internal, 244295, 244639
-recovered pasa_asmbl_915.p1, internal, 244750, 244831
-recovered pasa_asmbl_915.p1, internal, 245308, 245498
-recovered pasa_asmbl_915.p1, internal, 245625, 245721
-recovered pasa_asmbl_915.p1, internal, 245872, 246034
-recovered pasa_asmbl_915.p1, internal, 246337, 246522
-recovered pasa_asmbl_915.p1, internal, 246992, 247082
-recovered pasa_asmbl_915.p1, internal, 247210, 247333
Valid prediction for CodingQuarry_transcript_2916-T1
Valid prediction for pasa_asmbl_932.p1
Valid prediction for GeneMark_model.2671_t
Valid prediction for Augustus_model.g1447.t1
Valid prediction for GlimmerHMM_glimmerT_1934-T1
Couldn't classify 69304, 69326
Sorry, prediction pasa_asmbl_942.p1 fails validation.
(ATG)	 AC	68464-68488	GT	TGG
(ATG)	 AG	68585-68679	GT	ATG
(GTG)	 AG	68828-69071	GT	AGG
(GTG)	 AG	69304-69326	TG	ATT
-recovered pasa_asmbl_942.p1, initial, 68464, 68488
add_exon() Sorry, pasa_asmbl_942.p1 68585-68679-initial-1 is invalid.
-recovered pasa_asmbl_942.p1, initial, 68585, 68679
-recovered pasa_asmbl_942.p1, internal, 68585, 68679
-recovered pasa_asmbl_942.p1, internal, 68828, 69071
Valid prediction for snap_scaffold_1-snap.2511-T1
Valid prediction for snap_scaffold_1-snap.2504-T1
Valid prediction for HiQ_model.g1451.t1
Valid prediction for GlimmerHMM_glimmerT_1946-T1
Valid prediction for Augustus_model.g1457.t1
Valid prediction for pasa_asmbl_930.p2
Valid prediction for GeneMark_model.2686_t
Valid prediction for GlimmerHMM_glimmerT_1945-T1
Valid prediction for pasa_asmbl_920.p1
Valid prediction for snap_scaffold_1-snap.2512-T1
Valid prediction for snap_scaffold_1-snap.2493-T1
Valid prediction for snap_scaffold_1-snap.2491-T1
Couldn't classify 77598, 77691
Sorry, prediction pasa_asmbl_938.p1 fails validation.
(TCC)	 CG	77598-77691	GT	CGG
(GTG)	 AG	77877-77989	GT	AGG
(CTG)	 AG	78101-78178	GT	ACG
(GCC)	 AG	78434-78583	GT	AGG
(ATA)	 AG	80706-80819	CC	GAC
-recovered pasa_asmbl_938.p1, terminal, 80706, 80819
-recovered pasa_asmbl_938.p1, internal, 77877, 77989
-recovered pasa_asmbl_938.p1, internal, 78101, 78178
-recovered pasa_asmbl_938.p1, internal, 78434, 78583
Valid prediction for Augustus_model.g1454.t1
Valid prediction for HiQ_model.g1439.t1
Valid prediction for HiQ_model.g1438.t1
Valid prediction for snap_scaffold_1-snap.2513-T1
Valid prediction for Augustus_model.g1453.t1
Valid prediction for HiQ_model.g1437.t1
Valid prediction for snap_scaffold_1-snap.2498-T1
Valid prediction for snap_scaffold_1-snap.2494-T1
Valid prediction for GlimmerHMM_glimmerT_1952-T1
Valid prediction for snap_scaffold_1-snap.2518-T1
Valid prediction for GeneMark_model.2673_t
Valid prediction for CodingQuarry_transcript_2912-T1
Valid prediction for HiQ_model.g1449.t1
Valid prediction for GeneMark_model.2674_t
Valid prediction for snap_scaffold_1-snap.2517-T1
Valid prediction for snap_scaffold_1-snap.2514-T1
Valid prediction for snap_scaffold_1-snap.2490-T1
Valid prediction for GlimmerHMM_glimmerT_1955-T1
Valid prediction for Augustus_model.g1436.t1
Valid prediction for GlimmerHMM_glimmerT_1932-T1
Valid prediction for GeneMark_model.2663_t
Valid prediction for snap_scaffold_1-snap.2489-T1
Valid prediction for GeneMark_model.2656_t
Valid prediction for GeneMark_model.2689_t
Valid prediction for GeneMark_model.2661_t
Valid prediction for pasa_asmbl_944.p1
Valid prediction for Augustus_model.g1433.t1
Valid prediction for snap_scaffold_1-snap.2508-T1
Valid prediction for GlimmerHMM_glimmerT_1948-T1
Valid prediction for GlimmerHMM_glimmerT_1947-T1
Valid prediction for HiQ_model.g1441.t1
Valid prediction for GeneMark_model.2695_t
Couldn't classify 37242, 37287
Sorry, prediction pasa_asmbl_946.p1 fails validation.
(CTT)	 AC	37242-37287	GT	AGG
(CTG)	 AG	37475-37533	GT	GGG
(GAG)	 AG	38768-38839	GT	GGG
(GTG)	 AG	39322-39390	GT	TGG
(ATG)	 AG	41857-41940	GT	AAG
(GTC)	 AG	42046-42125	GT	AGG
(TTC)	 AG	42311-42407	GT	AGG
(GCC)	 AG	42538-42675	GT	AGG
(GTG)	 AG	42959-43061	GT	AGG
(GTG)	 AG	43184-43332	GT	AGG
(GTG)	 AG	43735-43836	GT	AGG
(GAC)	 AG	44203-44357	GT	AGG
(GTG)	 AG	44601-44637	CA	AGC
-recovered pasa_asmbl_946.p1, initial, 41857, 41940
add_exon() Sorry, pasa_asmbl_946.p1 42046-42125-terminal-2 is invalid.
-recovered pasa_asmbl_946.p1, terminal, 42046, 42125
-recovered pasa_asmbl_946.p1, terminal, 44601, 44637
-recovered pasa_asmbl_946.p1, internal, 37475, 37533
-recovered pasa_asmbl_946.p1, internal, 38768, 38839
-recovered pasa_asmbl_946.p1, internal, 39322, 39390
-recovered pasa_asmbl_946.p1, internal, 41857, 41940
-recovered pasa_asmbl_946.p1, internal, 42046, 42125
-recovered pasa_asmbl_946.p1, internal, 42311, 42407
-recovered pasa_asmbl_946.p1, internal, 42538, 42675
-recovered pasa_asmbl_946.p1, internal, 42959, 43061
-recovered pasa_asmbl_946.p1, internal, 43184, 43332
-recovered pasa_asmbl_946.p1, internal, 43735, 43836
-recovered pasa_asmbl_946.p1, internal, 44203, 44357
Valid prediction for HiQ_model.g1448.t1
Valid prediction for GlimmerHMM_glimmerT_1938-T1
Valid prediction for GlimmerHMM_glimmerT_1933-T1
Valid prediction for CodingQuarry_transcript_2911-T1
Valid prediction for GeneMark_model.2685_t
Valid prediction for GlimmerHMM_glimmerT_1936-T1
Valid prediction for snap_scaffold_1-snap.2492-T1
Valid prediction for HiQ_model.g1452.t1
Valid prediction for CodingQuarry_transcript_2918-T1
Valid prediction for GeneMark_model.2680_t
Valid prediction for pasa_asmbl_922.p1
Valid prediction for GlimmerHMM_glimmerT_1926-T1
Couldn't classify 69801, 69933
Couldn't classify 72076, 72171
Sorry, prediction pasa_asmbl_941.p1 fails validation.
(CTG)	 GA	69801-69933	GT	AGG
(ACC)	 AG	70065-70162	GT	AGG
(GAC)	 AG	70254-70355	GC	AGG
(GTG)	 AG	70513-70672	GT	AGG
(GGT)	 AG	70823-70905	GT	CAG
(GAC)	 AG	71024-71150	GT	AGG
(GGC)	 AG	71237-71350	GT	AGG
(TTG)	 AG	71509-71551	GT	CAG
(CCG)	 AG	71663-71730	GT	AGG
(GAC)	 AG	71836-71975	GT	AGG
(GTG)	 AG	72076-72171	AC	AGA
-recovered pasa_asmbl_941.p1, internal, 70065, 70162
-recovered pasa_asmbl_941.p1, internal, 70254, 70355
-recovered pasa_asmbl_941.p1, internal, 70513, 70672
-recovered pasa_asmbl_941.p1, internal, 70823, 70905
-recovered pasa_asmbl_941.p1, internal, 71024, 71150
-recovered pasa_asmbl_941.p1, internal, 71237, 71350
-recovered pasa_asmbl_941.p1, internal, 71509, 71551
-recovered pasa_asmbl_941.p1, internal, 71663, 71730
-recovered pasa_asmbl_941.p1, internal, 71836, 71975
Valid prediction for HiQ_model.g1455.t1
Valid prediction for CodingQuarry_transcript_2909-T1
Couldn't classify 88403, 88495
Sorry, prediction pasa_asmbl_933.p1 fails validation.
(AAA)	 GG	88403-88495	GT	AGG
(AAC)	 AG	88749-88778	GT	AGG
(AAA)	 AG	89377-89400	GT	AAG
(GTG)	 AG	89662-89816	GT	ATG
(GGA)	 AG	89890-89994	GT	AAG
(GAC)	 AG	90103-90265	GT	AGG
(ATT)	 AG	90458-90568	GT	AGG
(GCA)	 AG	90738-90866	GT	AGG
(ATT)	 AG	91004-91120	GT	AGG
(ACA)	 AG	91470-91638	GT	AAG
(TGA)	 AG	91767-91892	GT	CGG
(GAG)	 AG	92000-92181	GT	AGG
(GGT)	 AG	92412-92597	GT	GGG
(AGT)	 AG	92715-92854	GT	AGG
(AGG)	 AG	92998-93158	GT	GGG
(AGG)	 AG	93256-93282	GT	AAG
(GTT)	 AG	93390-93449	GT	TGG
(TGG)	 AG	93562-93675	GT	AGG
(GTC)	 AG	93791-93992	GT	ACG
(TGT)	 AG	94127-94299	GT	AGG
(GCC)	 AG	94421-94532	GT	AGG
(GGG)	 AG	94638-94767	GA	GAG
add_exon() Sorry, pasa_asmbl_933.p1 94127-94299-terminal-2 is invalid.
-recovered pasa_asmbl_933.p1, terminal, 94127, 94299
-recovered pasa_asmbl_933.p1, terminal, 94638, 94767
-recovered pasa_asmbl_933.p1, internal, 88749, 88778
-recovered pasa_asmbl_933.p1, internal, 89377, 89400
-recovered pasa_asmbl_933.p1, internal, 89662, 89816
-recovered pasa_asmbl_933.p1, internal, 89890, 89994
-recovered pasa_asmbl_933.p1, internal, 90103, 90265
-recovered pasa_asmbl_933.p1, internal, 90458, 90568
-recovered pasa_asmbl_933.p1, internal, 90738, 90866
-recovered pasa_asmbl_933.p1, internal, 91004, 91120
-recovered pasa_asmbl_933.p1, internal, 91470, 91638
-recovered pasa_asmbl_933.p1, internal, 91767, 91892
-recovered pasa_asmbl_933.p1, internal, 92000, 92181
-recovered pasa_asmbl_933.p1, internal, 92412, 92597
-recovered pasa_asmbl_933.p1, internal, 92715, 92854
-recovered pasa_asmbl_933.p1, internal, 92998, 93158
-recovered pasa_asmbl_933.p1, internal, 93256, 93282
-recovered pasa_asmbl_933.p1, internal, 93390, 93449
-recovered pasa_asmbl_933.p1, internal, 93562, 93675
-recovered pasa_asmbl_933.p1, internal, 93791, 93992
-recovered pasa_asmbl_933.p1, internal, 94127, 94299
-recovered pasa_asmbl_933.p1, internal, 94421, 94532
Valid prediction for GeneMark_model.2697_t
Valid prediction for pasa_asmbl_918.p1
Valid prediction for snap_scaffold_1-snap.2495-T1
Valid prediction for GlimmerHMM_glimmerT_1942-T1
Valid prediction for GlimmerHMM_glimmerT_1949-T1
Valid prediction for GlimmerHMM_glimmerT_1935-T1
Valid prediction for GlimmerHMM_glimmerT_1957-T1
Valid prediction for Augustus_model.g1445.t1
Valid prediction for snap_scaffold_1-snap.2506-T1
Valid prediction for CodingQuarry_transcript_2917-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 115628, rend_intergenic: 108177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129356, rend_intergenic: 125857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131277, rend_intergenic: 131194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200450, rend_intergenic: 197173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210195, rend_intergenic: 207017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213391, rend_intergenic: 210751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217776, rend_intergenic: 214171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 252016
-exon list size: 800


building trellis

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13.8    
14.0    
14.1    
14.2    
14.3    
14.5    
14.6    
14.7    
14.8    
15.0    
15.1    
15.2    
15.3    
15.5    
15.6    
15.7    
15.8    
16.0    
16.1    
16.2    
16.3    
16.5    
16.6    
16.7    
16.8    
17.0    
17.1    
17.2    
17.3    
17.5    
17.6    
17.7    
17.8    
18.0    
18.1    
18.2    
18.3    
18.5    
18.6    
18.7    
18.8    
19.0    
19.1    
19.2    
19.3    
19.5    
19.6    
19.7    
19.8    
20.0    
20.1    
20.2    
20.3    
20.4    
20.6    
20.7    
20.8    
20.9    
21.1    
21.2    
21.3    
21.4    
21.6    
21.7    
21.8    
21.9    
22.1    
22.2    
22.3    
22.4    
22.6    
22.7    
22.8    
22.9    
23.1    
23.2    
23.3    
23.4    
23.6    
23.7    
23.8    
23.9    
24.1    
24.2    
24.3    
24.4    
24.6    
24.7    
24.8    
24.9    
25.1    
25.2    
25.3    
25.4    
25.6    
25.7    
25.8    
25.9    
26.1    
26.2    
26.3    
26.4    
26.6    
26.7    
26.8    
26.9    
27.1    
27.2    
27.3    
27.4    
27.6    
27.7    
27.8    
27.9    
28.1    
28.2    
28.3    
28.4    
28.6    
28.7    
28.8    
28.9    
29.1    
29.2    
29.3    
29.4    
29.6    
29.7    
29.8    
29.9    
30.0    
30.2    
30.3    
30.4    
30.5    
30.7    
30.8    
30.9    
31.0    
31.2    
31.3    
31.4    
31.5    
31.7    
31.8    
31.9    
32.0    
32.2    
32.3    
32.4    
32.5    
32.7    
32.8    
32.9    
33.0    
33.2    
33.3    
33.4    
33.5    
33.7    
33.8    
33.9    
34.0    
34.2    
34.3    
34.4    
34.5    
34.7    
34.8    
34.9    
35.0    
35.2    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.0    
36.2    
36.3    
36.4    
36.5    
36.7    
36.8    
36.9    
37.0    
37.2    
37.3    
37.4    
37.5    
37.7    
37.8    
37.9    
38.0    
38.2    
38.3    
38.4    
38.5    
38.7    
38.8    
38.9    
39.0    
39.2    
39.3    
39.4    
39.5    
39.7    
39.8    
39.9    
40.0    
40.1    
40.3    
40.4    
40.5    
40.6    
40.8    
40.9    
41.0    
41.1    
41.3    
41.4    
41.5    
41.6    
41.8    
41.9    
42.0    
42.1    
42.3    
42.4    
42.5    
42.6    
42.8    
42.9    
43.0    
43.1    
43.3    
43.4    
43.5    
43.6    
43.8    
43.9    
44.0    
44.1    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.3    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.1    
46.3    
46.4    
46.5    
46.6    
46.8    
46.9    
47.0    
47.1    
47.3    
47.4    
47.5    
47.6    
47.8    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.1    
49.3    
49.4    
49.5    
49.6    
49.8    
49.9    
50.0    
50.1    
50.2    
50.4    
50.5    
50.6    
50.7    
50.9    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.7    
52.9    
53.0    
53.1    
53.2    
53.4    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.9    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.7    
57.9    
58.0    
58.1    
58.2    
58.4    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.2    
60.3    
60.5    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.3    
61.5    
61.6    
61.7    
61.8    
62.0    
62.1    
62.2    
62.3    
62.5    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
69.0    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.3    
70.4    
70.6    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
71.9    
72.1    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.4    
73.6    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.4    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.6    
76.7    
76.8    
76.9    
77.1    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.4    
79.6    
79.7    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.2    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.0    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 115628, rend_intergenic: 108177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129356, rend_intergenic: 125857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131277, rend_intergenic: 131194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200450, rend_intergenic: 197173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210195, rend_intergenic: 207017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213391, rend_intergenic: 210751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217776, rend_intergenic: 214171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support