-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_12297847-12626607

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g1240.t1
Valid prediction for pasa_asmbl_2205.p3
Valid prediction for GlimmerHMM_glimmerT_1684-T1
Valid prediction for Augustus_model.g1243.t1
Valid prediction for HiQ_model.g1251.t1
Valid prediction for HiQ_model.g1237.t1
Valid prediction for snap_scaffold_1-snap.2160-T1
Valid prediction for GeneMark_model.2257_t
Valid prediction for HiQ_model.g1232.t1
Valid prediction for GeneMark_model.2255_t
Valid prediction for GlimmerHMM_glimmerT_1701-T1
Valid prediction for GeneMark_model.2270_t
Couldn't classify 190187, 190228
Couldn't classify 192797, 193144
Sorry, prediction pasa_asmbl_2214.p1 fails validation.
(CAA)	 AC	190187-190228	GT	CAG
(TCG)	 AG	192797-193144	GG	TGG
Valid prediction for GlimmerHMM_glimmerT_1699-T1
Valid prediction for GlimmerHMM_glimmerT_1698-T1
Valid prediction for GeneMark_model.2269_t
Valid prediction for CodingQuarry_transcript_2833-T1
Valid prediction for snap_scaffold_1-snap.2151-T1
Valid prediction for snap_scaffold_1-snap.2167-T1
Couldn't classify 196268, 196322
Sorry, prediction pasa_asmbl_2216.p1 fails validation.
(GAG)	 AG	196268-196322	GT	GGG
(GCC)	 AG	196437-196552	GT	CTG
(GCC)	 AG	196745-196822	GT	TGG
(GTA)	 AG	197077-197128	GT	TGG
(GCA)	 AG	197405-197484	GT	GAG
(AAG)	 AG	197598-197731	GT	AGG
(CTT)	 AG	197853-199002	GA	AGG
-recovered pasa_asmbl_2216.p1, terminal, 197853, 199002
-recovered pasa_asmbl_2216.p1, internal, 196268, 196322
-recovered pasa_asmbl_2216.p1, internal, 196437, 196552
-recovered pasa_asmbl_2216.p1, internal, 196745, 196822
-recovered pasa_asmbl_2216.p1, internal, 197077, 197128
-recovered pasa_asmbl_2216.p1, internal, 197405, 197484
-recovered pasa_asmbl_2216.p1, internal, 197598, 197731
Valid prediction for snap_scaffold_1-snap.2147-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.2267_t
Valid prediction for GlimmerHMM_glimmerT_1688-T1
Valid prediction for Augustus_model.g1227.t1
Valid prediction for GeneMark_model.2265_t
Valid prediction for CodingQuarry_transcript_2822-T1
Valid prediction for GeneMark_model.2247_t
Valid prediction for GlimmerHMM_glimmerT_1676-T1
Valid prediction for HiQ_model.g1234.t1
Valid prediction for Augustus_model.g1242.t1
Valid prediction for snap_scaffold_1-snap.2170-T1
Valid prediction for GlimmerHMM_glimmerT_1693-T1
Valid prediction for GlimmerHMM_glimmerT_1685-T1
Valid prediction for GeneMark_model.2243_t
Valid prediction for pasa_asmbl_2740.p1
Valid prediction for HiQ_model.g1253.t1
Valid prediction for GlimmerHMM_glimmerT_1681-T1
Valid prediction for CodingQuarry_transcript_2821-T1
Valid prediction for snap_scaffold_1-snap.2168-T1
Valid prediction for GlimmerHMM_glimmerT_1682-T1
Valid prediction for pasa_asmbl_2184.p1
Valid prediction for GeneMark_model.2241_t
Couldn't classify 29791, 29801
Sorry, prediction CodingQuarry_transcript_2817-T1 fails validation.
(ATG)	 AG	29121-29237	GT	AGG
(GGG)	 AG	29524-29695	GT	GGG
(GCG)	 CA	29791-29801	TG	AAT
-recovered CodingQuarry_transcript_2817-T1, initial, 29121, 29237
-recovered CodingQuarry_transcript_2817-T1, internal, 29121, 29237
-recovered CodingQuarry_transcript_2817-T1, internal, 29524, 29695
Valid prediction for GlimmerHMM_glimmerT_1690-T1
Valid prediction for snap_scaffold_1-snap.2137-T1
Valid prediction for HiQ_model.g1233.t1
Valid prediction for snap_scaffold_1-snap.2169-T1
Valid prediction for GeneMark_model.2240_t
Valid prediction for snap_scaffold_1-snap.2140-T1
Valid prediction for CodingQuarry_transcript_2832-T1
Valid prediction for GeneMark_model.2258_t
Valid prediction for GlimmerHMM_glimmerT_1687-T1
Valid prediction for pasa_asmbl_2210.p1
Valid prediction for snap_scaffold_1-snap.2150-T1
Valid prediction for snap_scaffold_1-snap.2143-T1
Valid prediction for GlimmerHMM_glimmerT_1683-T1
Valid prediction for GlimmerHMM_glimmerT_1679-T1
Valid prediction for CodingQuarry_transcript_2820-T1
Valid prediction for HiQ_model.g1230.t1
Valid prediction for GeneMark_model.2250_t
Valid prediction for CodingQuarry_transcript_2835-T1
Valid prediction for Augustus_model.g1250.t1
Valid prediction for Augustus_model.g1225.t1
Valid prediction for GeneMark_model.2236_t
Valid prediction for Augustus_model.g1252.t1
Valid prediction for GlimmerHMM_glimmerT_1696-T1
Valid prediction for pasa_asmbl_2218.p1
Valid prediction for snap_scaffold_1-snap.2161-T1
Valid prediction for GeneMark_model.2266_t
Valid prediction for GlimmerHMM_glimmerT_1700-T1
Valid prediction for GeneMark_model.2271_t
Valid prediction for snap_scaffold_1-snap.2148-T1
Valid prediction for Augustus_model.g1249.t1
Valid prediction for Augustus_model.g1244.t1
Valid prediction for snap_scaffold_1-snap.2142-T1
Valid prediction for CodingQuarry_transcript_2834-T1
Valid prediction for HiQ_model.g1247.t1
Valid prediction for pasa_asmbl_2220.p1
Valid prediction for snap_scaffold_1-snap.2177-T1
Valid prediction for CodingQuarry_transcript_2830-T1
Couldn't classify 29085, 29237
Sorry, prediction pasa_asmbl_2180.p1 fails validation.
(CCA)	 CA	29085-29237	GT	AGG
(GGG)	 AG	29524-29695	GT	GGG
(CGG)	 AG	29792-29955	GT	CGG
(AAC)	 AG	30043-30219	GT	TGG
(ATG)	 AG	30422-30626	GT	AGG
(ATC)	 AG	30723-30881	GT	GGG
(GGG)	 AG	31048-31370	GA	GAG
-recovered pasa_asmbl_2180.p1, initial, 30422, 30626
-recovered pasa_asmbl_2180.p1, terminal, 31048, 31370
-recovered pasa_asmbl_2180.p1, internal, 29524, 29695
-recovered pasa_asmbl_2180.p1, internal, 29792, 29955
-recovered pasa_asmbl_2180.p1, internal, 30043, 30219
-recovered pasa_asmbl_2180.p1, internal, 30422, 30626
-recovered pasa_asmbl_2180.p1, internal, 30723, 30881
Valid prediction for GlimmerHMM_glimmerT_1692-T1
Valid prediction for Augustus_model.g1235.t1
Valid prediction for GlimmerHMM_glimmerT_1702-T1
Valid prediction for HiQ_model.g1231.t1
Valid prediction for GeneMark_model.2251_t
Valid prediction for Augustus_model.g1254.t1
Valid prediction for pasa_asmbl_2222.p1
Valid prediction for snap_scaffold_1-snap.2173-T1
Valid prediction for CodingQuarry_transcript_2824-T1
Valid prediction for snap_scaffold_1-snap.2172-T1
Valid prediction for snap_scaffold_1-snap.2154-T1
Valid prediction for snap_scaffold_1-snap.2146-T1
Valid prediction for pasa_asmbl_2187.p1
Couldn't classify 292222, 292258
Sorry, prediction pasa_asmbl_2224.p1 fails validation.
(CAC)	 TG	292222-292258	GT	TGG
(GTA)	 AG	292355-292483	GT	GGG
(GTC)	 AG	292588-292752	GT	AGG
(GAG)	 AG	292864-292991	GT	AGG
(GGA)	 AG	293124-293354	GG	AGG
-recovered pasa_asmbl_2224.p1, terminal, 293124, 293354
-recovered pasa_asmbl_2224.p1, internal, 292355, 292483
-recovered pasa_asmbl_2224.p1, internal, 292588, 292752
-recovered pasa_asmbl_2224.p1, internal, 292864, 292991
Valid prediction for GeneMark_model.2260_t
Valid prediction for GlimmerHMM_glimmerT_1677-T1
Valid prediction for HiQ_model.g1238.t1
Valid prediction for snap_scaffold_1-snap.2162-T1
Valid prediction for snap_scaffold_1-snap.2159-T1
Valid prediction for snap_scaffold_1-snap.2171-T1
Valid prediction for snap_scaffold_1-snap.2156-T1
Valid prediction for snap_scaffold_1-snap.2166-T1
Valid prediction for GeneMark_model.2263_t
Valid prediction for Augustus_model.g1229.t1
Valid prediction for GeneMark_model.2268_t
Valid prediction for Augustus_model.g1255.t1
Valid prediction for GlimmerHMM_glimmerT_1703-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.2139-T1
Valid prediction for GeneMark_model.2237_t
Valid prediction for Augustus_model.g1236.t1
Valid prediction for GeneMark_model.2273_t
Valid prediction for snap_scaffold_1-snap.2149-T1
Valid prediction for CodingQuarry_transcript_2831-T1
Couldn't classify 189861, 190202
Sorry, prediction pasa_asmbl_724.p1 fails validation.
(TGC)	 AC	189861-190202	CG	AAC
Valid prediction for GlimmerHMM_glimmerT_1689-T1
Valid prediction for Augustus_model.g1248.t1
Valid prediction for Augustus_model.g1258.t1
Valid prediction for snap_scaffold_1-snap.2145-T1
Valid prediction for GeneMark_model.2253_t
Valid prediction for CodingQuarry_transcript_2827-T1
Valid prediction for snap_scaffold_1-snap.2176-T1
Couldn't classify 123956, 124141
Sorry, prediction pasa_asmbl_731.p1 fails validation.
(GAT)	 AG	123956-124141	GT	GGG
(GAC)	 AG	126482-126539	GT	AGG
(ATG)	 AG	127296-127415	GT	AGG
(AGG)	 AG	127581-127714	GT	CGG
(GTG)	 AG	128105-128239	GC	GAG
add_exon() Sorry, pasa_asmbl_731.p1 127296-127415-initial-1 is invalid.
-recovered pasa_asmbl_731.p1, initial, 127296, 127415
-recovered pasa_asmbl_731.p1, terminal, 128105, 128239
-recovered pasa_asmbl_731.p1, internal, 123956, 124141
-recovered pasa_asmbl_731.p1, internal, 126482, 126539
-recovered pasa_asmbl_731.p1, internal, 127296, 127415
-recovered pasa_asmbl_731.p1, internal, 127581, 127714
-recovered pasa_asmbl_731.p1, internal, 128105, 128239
Valid prediction for GeneMark_model.2238_t
Valid prediction for HiQ_model.g1228.t1
Valid prediction for snap_scaffold_1-snap.2155-T1
Valid prediction for GeneMark_model.2256_t
Valid prediction for GeneMark_model.2254_t
Valid prediction for Augustus_model.g1226.t1
Valid prediction for snap_scaffold_1-snap.2175-T1
Valid prediction for GeneMark_model.2262_t
Valid prediction for GeneMark_model.2259_t
Couldn't classify 119501, 119689
Sorry, prediction pasa_asmbl_735.p1 fails validation.
(ATG)	 CA	117083-117216	GT	AGG
(TTA)	 AG	117494-117569	GT	AGG
(GTG)	 AG	118858-118982	GT	AAG
(GAT)	 AG	119250-119385	GT	AGG
(ATT)	 AG	119501-119689	GT	CGG
-recovered pasa_asmbl_735.p1, initial, 117083, 117216
-recovered pasa_asmbl_735.p1, internal, 117494, 117569
-recovered pasa_asmbl_735.p1, internal, 118858, 118982
-recovered pasa_asmbl_735.p1, internal, 119250, 119385
-recovered pasa_asmbl_735.p1, internal, 119501, 119689
Valid prediction for snap_scaffold_1-snap.2152-T1
Valid prediction for GeneMark_model.2261_t
Valid prediction for snap_scaffold_1-snap.2141-T1
Valid prediction for snap_scaffold_1-snap.2164-T1
Valid prediction for GlimmerHMM_glimmerT_1706-T1
Valid prediction for GlimmerHMM_glimmerT_1705-T1
Valid prediction for GeneMark_model.2239_t
Valid prediction for GlimmerHMM_glimmerT_1678-T1
Valid prediction for snap_scaffold_1-snap.2153-T1
Valid prediction for snap_scaffold_1-snap.2163-T1
Valid prediction for pasa_asmbl_725.p1
Valid prediction for CodingQuarry_transcript_2828-T1
Valid prediction for CodingQuarry_transcript_2826-T1
Valid prediction for GeneMark_model.2272_t
Valid prediction for Augustus_model.g1257.t1
Valid prediction for GlimmerHMM_glimmerT_1694-T1
Valid prediction for GlimmerHMM_glimmerT_1686-T1
Valid prediction for HiQ_model.g1239.t1
Valid prediction for snap_scaffold_1-snap.2165-T1
Valid prediction for snap_scaffold_1-snap.2157-T1
Valid prediction for snap_scaffold_1-snap.2144-T1
Valid prediction for CodingQuarry_transcript_2818-T1
Couldn't classify 31512, 31605
Sorry, prediction pasa_asmbl_741.p1 fails validation.
(AGC)	 AC	31512-31605	GT	AGG
(TCA)	 AG	31874-32022	GT	CTG
(AGC)	 AG	32128-32277	GG	GAG
-recovered pasa_asmbl_741.p1, terminal, 32128, 32277
-recovered pasa_asmbl_741.p1, internal, 31874, 32022
Valid prediction for CodingQuarry_transcript_2825-T1
Valid prediction for GeneMark_model.2244_t
Valid prediction for pasa_asmbl_717.p1
Couldn't classify 13373, 13459
Sorry, prediction pasa_asmbl_1368.p1 fails validation.
(ATG)	 AT	12606-12710	GT	AGG
(ACC)	 AG	12848-12981	GT	AGG
(GCA)	 AG	13155-13242	GT	ATG
(TTT)	 AG	13373-13459	CG	GCC
-recovered pasa_asmbl_1368.p1, initial, 12606, 12710
-recovered pasa_asmbl_1368.p1, internal, 12848, 12981
-recovered pasa_asmbl_1368.p1, internal, 13155, 13242
Valid prediction for pasa_asmbl_736.p1
Valid prediction for snap_scaffold_1-snap.2138-T1
Valid prediction for GlimmerHMM_glimmerT_1691-T1
Valid prediction for GlimmerHMM_glimmerT_1680-T1
Valid prediction for snap_scaffold_1-snap.2158-T1
Valid prediction for GlimmerHMM_glimmerT_1697-T1
Valid prediction for GeneMark_model.2242_t
Valid prediction for GeneMark_model.2264_t
Valid prediction for GeneMark_model.2248_t
Valid prediction for GlimmerHMM_glimmerT_1707-T1
Valid prediction for CodingQuarry_transcript_2829-T1
Valid prediction for Augustus_model.g1241.t1
Couldn't classify 14283, 14444
Sorry, prediction pasa_asmbl_743.p1 fails validation.
(TTC)	 TC	14283-14444	GT	AGG
(AAA)	 AG	14594-14719	GT	AGG
(CTG)	 AG	14820-14971	GT	AGG
(GGA)	 AG	15093-15190	GT	CCG
(GGC)	 AG	15314-15437	GT	AGG
(ATT)	 AG	15647-15848	GT	AAG
(GAG)	 AG	15977-16116	GT	AGG
(AGA)	 AG	16247-16332	GT	AGG
(TGC)	 AG	16460-16583	GT	AAG
(GAA)	 AG	16719-16801	GT	TGG
(ATG)	 AG	16934-17091	GT	TGG
(ACT)	 AG	17513-17723	GT	AGG
(GTA)	 AG	17846-17914	GT	AGG
(GCT)	 AG	18078-18196	GT	AGG
(GAG)	 AG	18314-18533	GT	AGG
(ATT)	 AG	18668-18713	GT	AGG
(ATC)	 AG	18792-18853	GT	AGG
(ATG)	 AG	18984-19114	TG	AGT
add_exon() Sorry, pasa_asmbl_743.p1 16934-17091-initial-1 is invalid.
-recovered pasa_asmbl_743.p1, initial, 16934, 17091
-recovered pasa_asmbl_743.p1, terminal, 18984, 19114
-recovered pasa_asmbl_743.p1, internal, 14594, 14719
-recovered pasa_asmbl_743.p1, internal, 14820, 14971
-recovered pasa_asmbl_743.p1, internal, 15093, 15190
-recovered pasa_asmbl_743.p1, internal, 15314, 15437
-recovered pasa_asmbl_743.p1, internal, 15647, 15848
-recovered pasa_asmbl_743.p1, internal, 15977, 16116
-recovered pasa_asmbl_743.p1, internal, 16247, 16332
-recovered pasa_asmbl_743.p1, internal, 16460, 16583
-recovered pasa_asmbl_743.p1, internal, 16719, 16801
-recovered pasa_asmbl_743.p1, internal, 16934, 17091
-recovered pasa_asmbl_743.p1, internal, 17513, 17723
-recovered pasa_asmbl_743.p1, internal, 17846, 17914
-recovered pasa_asmbl_743.p1, internal, 18078, 18196
-recovered pasa_asmbl_743.p1, internal, 18314, 18533
-recovered pasa_asmbl_743.p1, internal, 18668, 18713
-recovered pasa_asmbl_743.p1, internal, 18792, 18853
Valid prediction for GeneMark_model.2252_t
Valid prediction for GlimmerHMM_glimmerT_1704-T1
Valid prediction for GeneMark_model.2249_t
Valid prediction for Augustus_model.g1245.t1
Valid prediction for Augustus_model.g1246.t1
Valid prediction for Augustus_model.g1256.t1
Valid prediction for GeneMark_model.2274_t
Valid prediction for GlimmerHMM_glimmerT_1695-T1
Valid prediction for snap_scaffold_1-snap.2174-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14655, rend_intergenic: 9658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22091, rend_intergenic: 21545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25367, rend_intergenic: 23327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27005, rend_intergenic: 26865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40659, rend_intergenic: 37639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199017, rend_intergenic: 196397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 328761
-exon list size: 604


building trellis

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46.4    
46.5    
46.7    
46.9    
47.0    
47.2    
47.4    
47.5    
47.7    
47.9    
48.0    
48.2    
48.3    
48.5    
48.7    
48.8    
49.0    
49.2    
49.3    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.7    
50.8    
51.0    
51.2    
51.3    
51.5    
51.7    
51.8    
52.0    
52.1    
52.3    
52.5    
52.6    
52.8    
53.0    
53.1    
53.3    
53.5    
53.6    
53.8    
54.0    
54.1    
54.3    
54.5    
54.6    
54.8    
55.0    
55.1    
55.3    
55.4    
55.6    
55.8    
55.9    
56.1    
56.3    
56.4    
56.6    
56.8    
56.9    
57.1    
57.3    
57.4    
57.6    
57.8    
57.9    
58.1    
58.3    
58.4    
58.6    
58.7    
58.9    
59.1    
59.2    
59.4    
59.6    
59.7    
59.9    
60.1    
60.2    
60.4    
60.6    
60.7    
60.9    
61.1    
61.2    
61.4    
61.6    
61.7    
61.9    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.0    
63.2    
63.4    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.5    
64.7    
64.9    
65.0    
65.2    
65.3    
65.5    
65.7    
65.8    
66.0    
66.2    
66.3    
66.5    
66.7    
66.8    
67.0    
67.2    
67.3    
67.5    
67.7    
67.8    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
69.0    
69.1    
69.3    
69.5    
69.6    
69.8    
70.0    
70.1    
70.3    
70.5    
70.6    
70.8    
71.0    
71.1    
71.3    
71.5    
71.6    
71.8    
71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
72.9    
73.1    
73.3    
73.4    
73.6    
73.8    
73.9    
74.1    
74.3    
74.4    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.6    
75.7    
75.9    
76.1    
76.2    
76.4    
76.6    
76.7    
76.9    
77.1    
77.2    
77.4    
77.6    
77.7    
77.9    
78.1    
78.2    
78.4    
78.5    
78.7    
78.9    
79.0    
79.2    
79.4    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.5    
80.7    
80.9    
81.0    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.2    
82.3    
82.5    
82.7    
82.8    
83.0    
83.2    
83.3    
83.5    
83.7    
83.8    
84.0    
84.2    
84.3    
84.5    
84.7    
84.8    
85.0    
85.1    
85.3    
85.5    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.6    
86.8    
87.0    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.1    
88.3    
88.4    
88.6    
88.8    
88.9    
89.1    
89.3    
89.4    
89.6    
89.8    
89.9    
90.1    
90.3    
90.4    
90.6    
90.8    
90.9    
91.1    
91.3    
91.4    
91.6    
91.7    
91.9    
92.1    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.2    
93.4    
93.6    
93.7    
93.9    
94.1    
94.2    
94.4    
94.6    
94.7    
94.9    
95.0    
95.2    
95.4    
95.5    
95.7    
95.9    
96.0    
96.2    
96.4    
96.5    
96.7    
96.9    
97.0    
97.2    
97.4    
97.5    
97.7    
97.9    
98.0    
98.2    
98.3    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 14655, rend_intergenic: 9658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22091, rend_intergenic: 21545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25367, rend_intergenic: 23327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27005, rend_intergenic: 26865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40659, rend_intergenic: 37639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199017, rend_intergenic: 196397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14455
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11858
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support