-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_11781543-12019405

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 131046, 131159
Couldn't classify 131334, 131387
Sorry, prediction CodingQuarry_transcript_2805-T1 fails validation.
(ATG)	 AA	128304-128351	GT	AGG
(AGA)	 AG	128435-128531	GT	AGG
(ACC)	 AG	128695-128822	GT	CGG
(CTT)	 AG	128912-129052	GT	TGG
(GAG)	 AG	129393-129550	GT	AGG
(TTC)	 AG	129705-129801	GT	CAG
(CTG)	 AG	129912-130031	GT	TGG
(CGA)	 AG	130252-130386	GT	AGG
(GTG)	 AG	130617-130805	GT	CTG
(AAT)	 AG	131046-131159	AC	TGA
(TCT)	 TT	131334-131387	GC	GAG
-recovered CodingQuarry_transcript_2805-T1, initial, 128304, 128351
-recovered CodingQuarry_transcript_2805-T1, internal, 128435, 128531
-recovered CodingQuarry_transcript_2805-T1, internal, 128695, 128822
-recovered CodingQuarry_transcript_2805-T1, internal, 128912, 129052
-recovered CodingQuarry_transcript_2805-T1, internal, 129393, 129550
-recovered CodingQuarry_transcript_2805-T1, internal, 129705, 129801
-recovered CodingQuarry_transcript_2805-T1, internal, 129912, 130031
-recovered CodingQuarry_transcript_2805-T1, internal, 130252, 130386
-recovered CodingQuarry_transcript_2805-T1, internal, 130617, 130805
Valid prediction for GlimmerHMM_glimmerT_1627-T1
Valid prediction for snap_scaffold_1-snap.2076-T1
Couldn't classify 151691, 151744
Couldn't classify 155501, 155553
Sorry, prediction pasa_asmbl_2151.p1 fails validation.
(CCG)	 CT	151691-151744	GT	CGG
(GGC)	 AG	151853-151980	GT	AGG
(GAT)	 AG	152236-152350	GT	AGG
(GCC)	 AG	152553-152754	GT	AGG
(TGG)	 AG	153016-153128	GT	AGG
(CAC)	 AG	154138-154218	GT	AGG
(GGG)	 AG	154503-154626	GT	TGG
(GTG)	 AG	154761-154882	GT	ACG
(GTC)	 AG	155052-155163	GT	AGG
(ATG)	 AG	155501-155553	AT	AGA
-recovered pasa_asmbl_2151.p1, internal, 151853, 151980
-recovered pasa_asmbl_2151.p1, internal, 152236, 152350
-recovered pasa_asmbl_2151.p1, internal, 152553, 152754
-recovered pasa_asmbl_2151.p1, internal, 153016, 153128
-recovered pasa_asmbl_2151.p1, internal, 154138, 154218
-recovered pasa_asmbl_2151.p1, internal, 154503, 154626
-recovered pasa_asmbl_2151.p1, internal, 154761, 154882
-recovered pasa_asmbl_2151.p1, internal, 155052, 155163
Valid prediction for snap_scaffold_1-snap.2083-T1
Valid prediction for snap_scaffold_1-snap.2052-T1
Valid prediction for CodingQuarry_transcript_2803-T1
Valid prediction for Augustus_model.g1198.t1
Valid prediction for GeneMark_model.2138_t
Valid prediction for Augustus_model.g1186.t1
Valid prediction for GeneMark_model.2163_t
Valid prediction for snap_scaffold_1-snap.2074-T1
Valid prediction for CodingQuarry_transcript_2798-T1
Valid prediction for Augustus_model.g1195.t1
Valid prediction for GlimmerHMM_glimmerT_1630-T1
Valid prediction for GeneMark_model.2155_t
Valid prediction for GeneMark_model.2154_t
Valid prediction for GlimmerHMM_glimmerT_1637-T1
Valid prediction for Augustus_model.g1197.t1
Valid prediction for pasa_asmbl_2148.p1
Valid prediction for HiQ_model.g1187.t1
Valid prediction for HiQ_model.g1191.t1
Valid prediction for pasa_asmbl_2719.p1
Valid prediction for GlimmerHMM_glimmerT_1626-T1
Valid prediction for CodingQuarry_transcript_2800-T1
Valid prediction for snap_scaffold_1-snap.2079-T1
Valid prediction for snap_scaffold_1-snap.2062-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.2159_t
Valid prediction for GeneMark_model.2171_t
Valid prediction for snap_scaffold_1-snap.2072-T1
Valid prediction for snap_scaffold_1-snap.2060-T1
Valid prediction for snap_scaffold_1-snap.2084-T1
Valid prediction for GlimmerHMM_glimmerT_1640-T1
Valid prediction for snap_scaffold_1-snap.2063-T1
Valid prediction for GeneMark_model.2175_t
Valid prediction for Augustus_model.g1182.t1
Valid prediction for GlimmerHMM_glimmerT_1614-T1
Valid prediction for snap_scaffold_1-snap.2073-T1
Valid prediction for GeneMark_model.2140_t
Valid prediction for GlimmerHMM_glimmerT_1635-T1
Couldn't classify 157132, 157155
Sorry, prediction pasa_asmbl_2152.p1 fails validation.
(CTA)	 CT	157132-157155	GT	AGG
(ATC)	 AG	157247-157421	GT	GGG
(ATC)	 AG	157677-157800	GT	AGG
(TGC)	 AG	158014-158266	GG	GAG
-recovered pasa_asmbl_2152.p1, terminal, 158014, 158266
-recovered pasa_asmbl_2152.p1, internal, 157247, 157421
-recovered pasa_asmbl_2152.p1, internal, 157677, 157800
Valid prediction for GeneMark_model.2150_t
Couldn't classify 112926, 113009
Sorry, prediction pasa_asmbl_2144.p1 fails validation.
(CAG)	 AC	112926-113009	GT	AGG
(GAA)	 AG	113376-113478	GT	TGG
(GAA)	 AG	113575-113606	GT	CTG
(ATG)	 AG	113819-113893	GT	AGG
(AAT)	 AG	113988-114093	GT	AGG
(CTG)	 AG	114188-114267	TC	AGT
-recovered pasa_asmbl_2144.p1, initial, 113819, 113893
-recovered pasa_asmbl_2144.p1, terminal, 114188, 114267
-recovered pasa_asmbl_2144.p1, internal, 113376, 113478
-recovered pasa_asmbl_2144.p1, internal, 113575, 113606
-recovered pasa_asmbl_2144.p1, internal, 113819, 113893
-recovered pasa_asmbl_2144.p1, internal, 113988, 114093
Valid prediction for snap_scaffold_1-snap.2086-T1
Valid prediction for snap_scaffold_1-snap.2089-T1
Valid prediction for CodingQuarry_transcript_2802-T1
Valid prediction for Augustus_model.g1196.t1
Valid prediction for GeneMark_model.2153_t
Valid prediction for GlimmerHMM_glimmerT_1619-T1
Valid prediction for HiQ_model.g1177.t1
Valid prediction for snap_scaffold_1-snap.2058-T1
Valid prediction for GlimmerHMM_glimmerT_1641-T1
Couldn't classify 122455, 122529
Sorry, prediction pasa_asmbl_2146.p1 fails validation.
(GTC)	 TA	122455-122529	GT	GGG
(TTT)	 AG	122635-122759	GT	AGG
(TGT)	 AG	122848-123040	GT	AGG
(GAG)	 AG	123139-123528	AC	AGA
-recovered pasa_asmbl_2146.p1, terminal, 123139, 123528
-recovered pasa_asmbl_2146.p1, internal, 122635, 122759
-recovered pasa_asmbl_2146.p1, internal, 122848, 123040
Valid prediction for HiQ_model.g1184.t1
Valid prediction for pasa_asmbl_2135.p1
Valid prediction for snap_scaffold_1-snap.2075-T1
Valid prediction for GeneMark_model.2158_t
Valid prediction for GlimmerHMM_glimmerT_1628-T1
Valid prediction for snap_scaffold_1-snap.2071-T1
Valid prediction for GlimmerHMM_glimmerT_1618-T1
Valid prediction for CodingQuarry_transcript_2806-T1
Valid prediction for GeneMark_model.2157_t
Valid prediction for snap_scaffold_1-snap.2059-T1
Valid prediction for GeneMark_model.2137_t
Valid prediction for GeneMark_model.2145_t
Valid prediction for GeneMark_model.2152_t
Valid prediction for snap_scaffold_1-snap.2067-T1
Valid prediction for GlimmerHMM_glimmerT_1625-T1
Valid prediction for GeneMark_model.2169_t
Valid prediction for GeneMark_model.2162_t
Valid prediction for pasa_asmbl_2155.p1
Couldn't classify 98579, 98697
Sorry, prediction pasa_asmbl_2688.p1 fails validation.
(GGC)	 AA	98579-98697	GC	AGG
(CTG)	 AG	99217-99430	CA	AGC
-recovered pasa_asmbl_2688.p1, terminal, 99217, 99430
Valid prediction for snap_scaffold_1-snap.2070-T1
Valid prediction for snap_scaffold_1-snap.2090-T1
Valid prediction for Augustus_model.g1189.t1
Valid prediction for Augustus_model.g1190.t1
Valid prediction for snap_scaffold_1-snap.2081-T1
Valid prediction for Augustus_model.g1185.t1
Valid prediction for CodingQuarry_transcript_2799-T1
Valid prediction for CodingQuarry_transcript_2804-T1
Valid prediction for Augustus_model.g1183.t1
Valid prediction for GlimmerHMM_glimmerT_1634-T1
Valid prediction for GlimmerHMM_glimmerT_1629-T1
Valid prediction for GeneMark_model.2160_t
Valid prediction for GeneMark_model.2164_t
Couldn't classify 39509, 39574
Sorry, prediction pasa_asmbl_2136.p1 fails validation.
(CTA)	 TG	39509-39574	GT	TGG
(TCT)	 AG	39812-39839	GT	CGG
(AGT)	 AG	41304-41447	GT	CGG
(AGA)	 AG	42051-42224	GT	GGG
(GAG)	 AG	42668-42745	GT	AGG
(AAC)	 AG	44714-44742	AG	GAA
-recovered pasa_asmbl_2136.p1, terminal, 44714, 44742
-recovered pasa_asmbl_2136.p1, internal, 39812, 39839
-recovered pasa_asmbl_2136.p1, internal, 41304, 41447
-recovered pasa_asmbl_2136.p1, internal, 42051, 42224
-recovered pasa_asmbl_2136.p1, internal, 42668, 42745
Valid prediction for GeneMark_model.2136_t
Valid prediction for GlimmerHMM_glimmerT_1639-T1
Valid prediction for snap_scaffold_1-snap.2069-T1
Valid prediction for snap_scaffold_1-snap.2066-T1
Valid prediction for GeneMark_model.2177_t
Valid prediction for GeneMark_model.2167_t
Valid prediction for snap_scaffold_1-snap.2057-T1
Valid prediction for HiQ_model.g1181.t1
Valid prediction for GlimmerHMM_glimmerT_1632-T1
Valid prediction for GlimmerHMM_glimmerT_1631-T1
Valid prediction for GeneMark_model.2144_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_1633-T1
Valid prediction for snap_scaffold_1-snap.2068-T1
Valid prediction for Augustus_model.g1175.t1
Valid prediction for snap_scaffold_1-snap.2088-T1
Valid prediction for snap_scaffold_1-snap.2054-T1
Valid prediction for GeneMark_model.2176_t
Valid prediction for snap_scaffold_1-snap.2056-T1
Valid prediction for GeneMark_model.2161_t
Valid prediction for Augustus_model.g1199.t1
Valid prediction for CodingQuarry_transcript_2801-T1
Valid prediction for GlimmerHMM_glimmerT_1644-T1
Valid prediction for snap_scaffold_1-snap.2053-T1
Valid prediction for GeneMark_model.2166_t
Valid prediction for GlimmerHMM_glimmerT_1622-T1
Valid prediction for snap_scaffold_1-snap.2061-T1
Valid prediction for Augustus_model.g1179.t1
Valid prediction for GlimmerHMM_glimmerT_1621-T1
Valid prediction for Augustus_model.g1194.t1
Valid prediction for GeneMark_model.2170_t
Valid prediction for GeneMark_model.2139_t
Valid prediction for GeneMark_model.2135_t
Valid prediction for GeneMark_model.2148_t
Valid prediction for snap_scaffold_1-snap.2055-T1
Valid prediction for Augustus_model.g1188.t1
Valid prediction for GlimmerHMM_glimmerT_1620-T1
Valid prediction for snap_scaffold_1-snap.2077-T1
Couldn't classify 186179, 186255
Couldn't classify 186993, 187053
Sorry, prediction pasa_asmbl_1361.p1 fails validation.
(CCC)	 AC	186179-186255	GT	AGG
(TGT)	 AG	186468-186539	GT	ATG
(TTA)	 AG	186664-186777	GT	AGG
(GGT)	 AG	186993-187053	CC	GAC
-recovered pasa_asmbl_1361.p1, internal, 186468, 186539
-recovered pasa_asmbl_1361.p1, internal, 186664, 186777
Valid prediction for GlimmerHMM_glimmerT_1617-T1
Valid prediction for snap_scaffold_1-snap.2080-T1
Valid prediction for GeneMark_model.2174_t
Valid prediction for GlimmerHMM_glimmerT_1615-T1
Valid prediction for HiQ_model.g1193.t1
Valid prediction for GlimmerHMM_glimmerT_1616-T1
Valid prediction for GlimmerHMM_glimmerT_1636-T1
Valid prediction for GeneMark_model.2147_t
Valid prediction for GlimmerHMM_glimmerT_1638-T1
Valid prediction for Augustus_model.g1178.t1
Valid prediction for GeneMark_model.2141_t
Valid prediction for GlimmerHMM_glimmerT_1624-T1
Valid prediction for GeneMark_model.2143_t
Valid prediction for snap_scaffold_1-snap.2085-T1
Valid prediction for GeneMark_model.2151_t
Valid prediction for CodingQuarry_transcript_2807-T1
Valid prediction for GeneMark_model.2168_t
Valid prediction for GeneMark_model.2146_t
Valid prediction for GlimmerHMM_glimmerT_1623-T1
Valid prediction for snap_scaffold_1-snap.2087-T1
Valid prediction for GeneMark_model.2173_t
Valid prediction for Augustus_model.g1174.t1
Couldn't classify 187722, 187767
Couldn't classify 188871, 189002
Sorry, prediction pasa_asmbl_684.p1 fails validation.
(GTG)	 CA	187722-187767	GT	GGG
(AGG)	 AG	187920-188081	GT	TGG
(AAG)	 AG	188197-188258	GT	AGG
(CAG)	 AG	188357-188480	GT	GGG
(GCG)	 AG	188580-188743	GT	AGG
(CAC)	 AG	188871-189002	GC	AGG
-recovered pasa_asmbl_684.p1, internal, 187920, 188081
-recovered pasa_asmbl_684.p1, internal, 188197, 188258
-recovered pasa_asmbl_684.p1, internal, 188357, 188480
-recovered pasa_asmbl_684.p1, internal, 188580, 188743
-recovered pasa_asmbl_684.p1, internal, 188871, 189002
Valid prediction for GeneMark_model.2156_t
Valid prediction for Augustus_model.g1200.t1
Valid prediction for Augustus_model.g1176.t1
Valid prediction for pasa_asmbl_686.p1
Valid prediction for Augustus_model.g1180.t1
Valid prediction for GeneMark_model.2165_t
Valid prediction for Augustus_model.g1192.t1
Valid prediction for snap_scaffold_1-snap.2082-T1
Valid prediction for GlimmerHMM_glimmerT_1642-T1
Valid prediction for GeneMark_model.2172_t
Valid prediction for snap_scaffold_1-snap.2078-T1
Valid prediction for snap_scaffold_1-snap.2051-T1
Valid prediction for GeneMark_model.2149_t
Valid prediction for snap_scaffold_1-snap.2065-T1
Valid prediction for GlimmerHMM_glimmerT_1643-T1
Valid prediction for snap_scaffold_1-snap.2064-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25686, rend_intergenic: 6318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54441, rend_intergenic: 48354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82044, rend_intergenic: 78770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86471, rend_intergenic: 82964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138787, rend_intergenic: 136114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158266, rend_intergenic: 139032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183923, rend_intergenic: 177717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198792, rend_intergenic: 196898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201837, rend_intergenic: 198912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235169, rend_intergenic: 223930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 237863
-exon list size: 737


building trellis

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51.3    
51.4    
51.6    
51.7    
51.8    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.2    
53.3    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.1    
55.2    
55.3    
55.5    
55.6    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
62.0    
62.1    
62.2    
62.4    
62.5    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.7    
64.8    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
67.0    
67.1    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.9    
69.0    
69.1    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.9    
74.0    
74.2    
74.3    
74.4    
74.6    
74.7    
74.8    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.8    
75.9    
76.0    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.5    
78.6    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.8    
80.9    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.6    
89.7    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.5    
91.6    
91.7    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.2    
94.3    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 25686, rend_intergenic: 6318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54441, rend_intergenic: 48354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82044, rend_intergenic: 78770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86471, rend_intergenic: 82964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138787, rend_intergenic: 136114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158266, rend_intergenic: 139032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183923, rend_intergenic: 177717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198792, rend_intergenic: 196898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201837, rend_intergenic: 198912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235169, rend_intergenic: 223930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support