-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1/scaffold_1_11490928-11787593 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_1580-T1 Valid prediction for snap_scaffold_1-snap.2046-T1 Valid prediction for GlimmerHMM_glimmerT_1573-T1 Valid prediction for GeneMark_model.2083_t Valid prediction for GeneMark_model.2101_t Valid prediction for snap_scaffold_1-snap.2015-T1 Valid prediction for GeneMark_model.2076_t Valid prediction for GlimmerHMM_glimmerT_1610-T1 Valid prediction for Augustus_model.g1156.t1 Valid prediction for snap_scaffold_1-snap.2008-T1 Couldn't classify 170706, 170883 Sorry, prediction pasa_asmbl_2800.p1 fails validation. (ACT) AG 170706-170883 GT CTG (CCT) AG 171116-171246 GT GTG (GGT) AG 171381-171416 GG GAG -recovered pasa_asmbl_2800.p1, terminal, 171381, 171416 -recovered pasa_asmbl_2800.p1, internal, 170706, 170883 -recovered pasa_asmbl_2800.p1, internal, 171116, 171246 Valid prediction for HiQ_model.g1165.t1 Valid prediction for snap_scaffold_1-snap.2016-T1 Valid prediction for snap_scaffold_1-snap.2013-T1 Valid prediction for GeneMark_model.2120_t Valid prediction for CodingQuarry_transcript_2789-T1 Valid prediction for pasa_asmbl_2111.p1 Valid prediction for CodingQuarry_transcript_2794-T1 Valid prediction for snap_scaffold_1-snap.2043-T1 Valid prediction for GlimmerHMM_glimmerT_1607-T1 Valid prediction for GlimmerHMM_glimmerT_1608-T1 Valid prediction for GlimmerHMM_glimmerT_1574-T1 Valid prediction for snap_scaffold_1-snap.2033-T1 Valid prediction for GlimmerHMM_glimmerT_1572-T1 Valid prediction for Augustus_model.g1148.t1 Valid prediction for GeneMark_model.2097_t Valid prediction for GlimmerHMM_glimmerT_1577-T1 Valid prediction for GlimmerHMM_glimmerT_1603-T1 Valid prediction for snap_scaffold_1-snap.2007-T1 Valid prediction for snap_scaffold_1-snap.2005-T1 Valid prediction for GeneMark_model.2116_t Valid prediction for pasa_asmbl_2123.p1 Valid prediction for Augustus_model.g1170.t1 Valid prediction for GeneMark_model.2125_t Valid prediction for HiQ_model.g1162.t1 Valid prediction for GeneMark_model.2100_t Valid prediction for CodingQuarry_transcript_2780-T1 Valid prediction for snap_scaffold_1-snap.2038-T1 Valid prediction for GeneMark_model.2084_t Valid prediction for GeneMark_model.2104_t Valid prediction for CodingQuarry_transcript_2790-T1 Valid prediction for snap_scaffold_1-snap.1997-T1 Valid prediction for GeneMark_model.2080_t Valid prediction for GlimmerHMM_glimmerT_1576-T1 Valid prediction for snap_scaffold_1-snap.2031-T1 Valid prediction for GlimmerHMM_glimmerT_1588-T1 Valid prediction for GeneMark_model.2087_t Valid prediction for snap_scaffold_1-snap.2029-T1 Valid prediction for snap_scaffold_1-snap.2001-T1 Valid prediction for HiQ_model.g1142.t1 Valid prediction for pasa_asmbl_2728.p1 Valid prediction for GeneMark_model.2134_t Valid prediction for GeneMark_model.2126_t Valid prediction for GeneMark_model.2113_t Valid prediction for GeneMark_model.2088_t Valid prediction for pasa_asmbl_2114.p1 Valid prediction for GeneMark_model.2111_t Valid prediction for GlimmerHMM_glimmerT_1600-T1 Valid prediction for HiQ_model.g1160.t1 Valid prediction for pasa_asmbl_2102.p1 Valid prediction for GlimmerHMM_glimmerT_1597-T1 Valid prediction for snap_scaffold_1-snap.1999-T1 Valid prediction for CodingQuarry_transcript_2795-T1 Couldn't classify 212816, 213118 Sorry, prediction pasa_asmbl_2117.p1 fails validation. (CAG) GC 212816-213118 GG AAG Valid prediction for GlimmerHMM_glimmerT_1609-T1 Valid prediction for CodingQuarry_transcript_2787-T1 Valid prediction for GeneMark_model.2081_t Valid prediction for Augustus_model.g1151.t1 Valid prediction for CodingQuarry_transcript_2791-T1 Valid prediction for GeneMark_model.2122_t Valid prediction for CodingQuarry_transcript_2796-T1 Valid prediction for GlimmerHMM_glimmerT_1595-T1 Valid prediction for GeneMark_model.2109_t Valid prediction for pasa_asmbl_2129.p1 Valid prediction for snap_scaffold_1-snap.2040-T1 Valid prediction for snap_scaffold_1-snap.2044-T1 Valid prediction for GlimmerHMM_glimmerT_1599-T1 Valid prediction for HiQ_model.g1161.t1 Valid prediction for GeneMark_model.2110_t Valid prediction for snap_scaffold_1-snap.2003-T1 Valid prediction for GeneMark_model.2082_t Valid prediction for pasa_asmbl_2113.p1 Valid prediction for GlimmerHMM_glimmerT_1569-T1 Valid prediction for pasa_asmbl_2127.p1 Valid prediction for CodingQuarry_transcript_2793-T1 Valid prediction for GeneMark_model.2117_t Valid prediction for HiQ_model.g1141.t1 Valid prediction for HiQ_model.g1171.t1 Valid prediction for snap_scaffold_1-snap.2034-T1 Valid prediction for snap_scaffold_1-snap.2032-T1 Valid prediction for GeneMark_model.2130_t Valid prediction for pasa_asmbl_2107.p1 Valid prediction for GlimmerHMM_glimmerT_1605-T1 Valid prediction for snap_scaffold_1-snap.2045-T1 Valid prediction for snap_scaffold_1-snap.2009-T1 Valid prediction for GlimmerHMM_glimmerT_1601-T1 Valid prediction for CodingQuarry_transcript_2781-T1 Valid prediction for HiQ_model.g1169.t1 Valid prediction for GlimmerHMM_glimmerT_1611-T1 Valid prediction for GeneMark_model.2128_t Valid prediction for HiQ_model.g1168.t1 Valid prediction for snap_scaffold_1-snap.2022-T1 Valid prediction for GeneMark_model.2091_t Valid prediction for HiQ_model.g1166.t1 Valid prediction for snap_scaffold_1-snap.2010-T1 Valid prediction for Augustus_model.g1158.t1 Valid prediction for snap_scaffold_1-snap.2027-T1 Valid prediction for CodingQuarry_transcript_2788-T1 Couldn't classify 228909, 229247 Sorry, prediction pasa_asmbl_2122.p1 fails validation. (GAG) CA 228909-229247 GT TGG (GAA) AG 229358-229459 GT TGG (AAC) AG 231700-231827 GT ATG (ATA) AG 232051-232117 GT AGG (GGG) AG 232247-232350 GT GAG (TTA) AG 233032-233101 GT ACG (GAA) AG 234320-234409 GT AGG (GAG) AG 234729-234821 GT AGG (GAC) AG 235452-235502 GT AGG (AAA) AG 235634-235711 GT AGG (GGT) AG 235802-235993 GT AGG (GTT) AG 236163-236343 GT CGG (CTC) AG 236632-236852 GT AGG (CCT) AG 237049-237204 GT AGG (GGT) AG 238168-238269 TG GAT -recovered pasa_asmbl_2122.p1, terminal, 238168, 238269 -recovered pasa_asmbl_2122.p1, internal, 229358, 229459 -recovered pasa_asmbl_2122.p1, internal, 231700, 231827 -recovered pasa_asmbl_2122.p1, internal, 232051, 232117 -recovered pasa_asmbl_2122.p1, internal, 232247, 232350 -recovered pasa_asmbl_2122.p1, internal, 233032, 233101 -recovered pasa_asmbl_2122.p1, internal, 234320, 234409 -recovered pasa_asmbl_2122.p1, internal, 234729, 234821 -recovered pasa_asmbl_2122.p1, internal, 235452, 235502 -recovered pasa_asmbl_2122.p1, internal, 235634, 235711 -recovered pasa_asmbl_2122.p1, internal, 235802, 235993 -recovered pasa_asmbl_2122.p1, internal, 236163, 236343 -recovered pasa_asmbl_2122.p1, internal, 236632, 236852 -recovered pasa_asmbl_2122.p1, internal, 237049, 237204 Valid prediction for GeneMark_model.2090_t Valid prediction for GeneMark_model.2085_t Valid prediction for GlimmerHMM_glimmerT_1584-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_1602-T1 Valid prediction for GlimmerHMM_glimmerT_1589-T1 Valid prediction for GlimmerHMM_glimmerT_1606-T1 Valid prediction for CodingQuarry_transcript_2797-T1 Valid prediction for snap_scaffold_1-snap.2036-T1 Valid prediction for CodingQuarry_transcript_2785-T1 Valid prediction for GeneMark_model.2112_t Valid prediction for GlimmerHMM_glimmerT_1593-T1 Valid prediction for HiQ_model.g1150.t1 Valid prediction for GeneMark_model.2123_t Couldn't classify 15298, 15627 Sorry, prediction pasa_asmbl_670.p1 fails validation. (CCC) CA 15298-15627 CC AGC Valid prediction for Augustus_model.g1172.t1 Valid prediction for snap_scaffold_1-snap.2012-T1 Valid prediction for HiQ_model.g1152.t1 Valid prediction for GeneMark_model.2096_t Valid prediction for Augustus_model.g1140.t1 Valid prediction for pasa_asmbl_651.p1 Valid prediction for GeneMark_model.2119_t Valid prediction for GeneMark_model.2133_t Valid prediction for GlimmerHMM_glimmerT_1590-T1 Valid prediction for GeneMark_model.2107_t Valid prediction for snap_scaffold_1-snap.2041-T1 Couldn't classify 161433, 161529 Sorry, prediction pasa_asmbl_652.p1 fails validation. (AAG) CG 161433-161529 GT CGG (GCA) AG 162098-162204 GT CTG (TAC) AG 162321-162523 GT AGG (TGA) AG 162716-162865 GT GGG (GAT) AG 163640-163802 GT AGG (AGG) AG 164704-164766 GT CAG (GAG) AG 164927-165011 GT CGG (ACT) AG 165181-165296 GT GGG (TGC) AG 166243-166307 GT AGG (TCT) AG 167451-167582 GT GGG (CTA) AG 168647-168830 AC GAA -recovered pasa_asmbl_652.p1, terminal, 168647, 168830 -recovered pasa_asmbl_652.p1, internal, 162098, 162204 -recovered pasa_asmbl_652.p1, internal, 162321, 162523 -recovered pasa_asmbl_652.p1, internal, 162716, 162865 -recovered pasa_asmbl_652.p1, internal, 163640, 163802 -recovered pasa_asmbl_652.p1, internal, 164704, 164766 -recovered pasa_asmbl_652.p1, internal, 164927, 165011 -recovered pasa_asmbl_652.p1, internal, 165181, 165296 -recovered pasa_asmbl_652.p1, internal, 166243, 166307 -recovered pasa_asmbl_652.p1, internal, 167451, 167582 Valid prediction for snap_scaffold_1-snap.2039-T1 Couldn't classify 14356, 14691 Sorry, prediction pasa_asmbl_671.p1 fails validation. (TTC) CC 14356-14691 CT TCC Valid prediction for GlimmerHMM_glimmerT_1604-T1 Valid prediction for Augustus_model.g1154.t1 Valid prediction for GeneMark_model.2093_t Valid prediction for GlimmerHMM_glimmerT_1575-T1 Valid prediction for GeneMark_model.2079_t Valid prediction for GeneMark_model.2124_t Valid prediction for Augustus_model.g1163.t1 Valid prediction for snap_scaffold_1-snap.2017-T1 Valid prediction for Augustus_model.g1144.t1 Valid prediction for CodingQuarry_transcript_2783-T1 Valid prediction for GlimmerHMM_glimmerT_1612-T1 Valid prediction for snap_scaffold_1-snap.2050-T1 Valid prediction for snap_scaffold_1-snap.2023-T1 Valid prediction for GlimmerHMM_glimmerT_1594-T1 Valid prediction for GlimmerHMM_glimmerT_1583-T1 Valid prediction for GeneMark_model.2099_t Valid prediction for snap_scaffold_1-snap.2021-T1 Valid prediction for GeneMark_model.2086_t Valid prediction for Augustus_model.g1159.t1 Valid prediction for CodingQuarry_transcript_2792-T1 Couldn't classify 215702, 215815 Sorry, prediction pasa_asmbl_644.p1 fails validation. (TCC) CC 215702-215815 GT GGG (GAG) AG 215945-216016 GT GGG (GTG) AG 216745-216813 GT TGG (ATG) AG 217879-217962 GT AGG (GTC) AG 218086-218165 GT AGG (CTC) AG 218553-218649 GT AGG (TCC) AG 218750-218887 GT GGG (ATA) AG 218974-219076 GT AGG (GGG) AG 219156-219292 GT AGG (GTT) AG 219463-219561 GT AGG (GAA) AG 219714-219868 GT AAG (GTG) AG 219956-219992 CA AAC -recovered pasa_asmbl_644.p1, initial, 217879, 217962 -recovered pasa_asmbl_644.p1, terminal, 219956, 219992 -recovered pasa_asmbl_644.p1, internal, 215945, 216016 -recovered pasa_asmbl_644.p1, internal, 216745, 216813 -recovered pasa_asmbl_644.p1, internal, 217879, 217962 -recovered pasa_asmbl_644.p1, internal, 218086, 218165 -recovered pasa_asmbl_644.p1, internal, 218553, 218649 -recovered pasa_asmbl_644.p1, internal, 218750, 218887 -recovered pasa_asmbl_644.p1, internal, 218974, 219076 -recovered pasa_asmbl_644.p1, internal, 219156, 219292 -recovered pasa_asmbl_644.p1, internal, 219463, 219561 -recovered pasa_asmbl_644.p1, internal, 219714, 219868 Valid prediction for GeneMark_model.2114_t Couldn't classify 14368, 15246 Sorry, prediction pasa_asmbl_2134.p1 fails validation. (ATG) AA 14368-15246 GG TTG Valid prediction for Augustus_model.g1174.t1 Valid prediction for HiQ_model.g1147.t1 Valid prediction for snap_scaffold_1-snap.2000-T1 Valid prediction for GlimmerHMM_glimmerT_1585-T1 Valid prediction for Augustus_model.g1146.t1 Valid prediction for GeneMark_model.2095_t Couldn't classify 51395, 51425 Sorry, prediction pasa_asmbl_667.p1 fails validation. (GTG) AG 51395-51425 GT AGG (GTC) AG 52087-52124 GT CAG (ATC) AG 52312-52492 GT CGG (TGC) AG 52717-52809 GT GGG (AAT) AG 52958-53145 GT AGG (GGC) AG 53359-53499 GT TGG (GTG) AG 54323-54560 GT AGG (AGT) AG 54764-54981 CC AAC add_exon() Sorry, pasa_asmbl_667.p1 54323-54560-terminal-3 is invalid. -recovered pasa_asmbl_667.p1, terminal, 54323, 54560 -recovered pasa_asmbl_667.p1, terminal, 54764, 54981 -recovered pasa_asmbl_667.p1, internal, 51395, 51425 -recovered pasa_asmbl_667.p1, internal, 52087, 52124 -recovered pasa_asmbl_667.p1, internal, 52312, 52492 -recovered pasa_asmbl_667.p1, internal, 52717, 52809 -recovered pasa_asmbl_667.p1, internal, 52958, 53145 -recovered pasa_asmbl_667.p1, internal, 53359, 53499 -recovered pasa_asmbl_667.p1, internal, 54323, 54560 Valid prediction for GeneMark_model.2078_t Valid prediction for snap_scaffold_1-snap.2002-T1 Valid prediction for snap_scaffold_1-snap.2018-T1 Valid prediction for snap_scaffold_1-snap.2006-T1 Valid prediction for snap_scaffold_1-snap.2042-T1 Valid prediction for CodingQuarry_transcript_2782-T1 Valid prediction for GeneMark_model.2115_t Valid prediction for GeneMark_model.2077_t Couldn't classify 205749, 205776 Couldn't classify 206964, 208774 Sorry, prediction pasa_asmbl_648.p1 fails validation. (GTG) AT 205749-205776 GT AGG (AGT) AG 206964-208774 AA GGA Valid prediction for GlimmerHMM_glimmerT_1579-T1 Valid prediction for GeneMark_model.2132_t Valid prediction for snap_scaffold_1-snap.2051-T1 Valid prediction for snap_scaffold_1-snap.2020-T1 Valid prediction for GeneMark_model.2094_t Valid prediction for Augustus_model.g1167.t1 Valid prediction for snap_scaffold_1-snap.2048-T1 Valid prediction for CodingQuarry_transcript_2786-T1 Valid prediction for snap_scaffold_1-snap.2025-T1 Valid prediction for pasa_asmbl_649.p1 Valid prediction for GeneMark_model.2102_t Valid prediction for GeneMark_model.2121_t Valid prediction for GeneMark_model.2108_t Valid prediction for GeneMark_model.2131_t Valid prediction for GeneMark_model.2103_t Valid prediction for pasa_asmbl_673.p1 Valid prediction for GlimmerHMM_glimmerT_1592-T1 Valid prediction for Augustus_model.g1157.t1 Valid prediction for HiQ_model.g1143.t1 Valid prediction for GlimmerHMM_glimmerT_1578-T1 Valid prediction for pasa_asmbl_636.p1 Valid prediction for GlimmerHMM_glimmerT_1571-T1 Valid prediction for GlimmerHMM_glimmerT_1591-T1 Couldn't classify 252109, 252345 Sorry, prediction pasa_asmbl_634.p1 fails validation. (GGG) GA 252109-252345 GT GGG (GTG) AG 254124-254280 GT AGG (AGG) AG 256359-256540 TC GAT -recovered pasa_asmbl_634.p1, terminal, 256359, 256540 -recovered pasa_asmbl_634.p1, internal, 254124, 254280 Valid prediction for snap_scaffold_1-snap.2019-T1 Valid prediction for GeneMark_model.2089_t Valid prediction for Augustus_model.g1155.t1 Valid prediction for snap_scaffold_1-snap.2026-T1 Valid prediction for Augustus_model.g1149.t1 Valid prediction for Augustus_model.g1139.t1 Valid prediction for snap_scaffold_1-snap.1998-T1 Valid prediction for snap_scaffold_1-snap.2037-T1 Valid prediction for snap_scaffold_1-snap.2035-T1 Valid prediction for Augustus_model.g1173.t1 Couldn't classify 91953, 92199 Sorry, prediction pasa_asmbl_664.p1 fails validation. (GGT) CA 91953-92199 GT AGG (TGA) AG 92358-92624 GT CGG (GTC) AG 92846-93076 GT AGG (ATA) AG 93704-93871 GT GGG (GTA) AG 94294-94450 GT AGG (GTA) AG 94537-94661 GT AGG (GGA) AG 94817-94947 GT AGG (GCC) AG 95102-95227 GA GAG -recovered pasa_asmbl_664.p1, terminal, 95102, 95227 -recovered pasa_asmbl_664.p1, internal, 92358, 92624 -recovered pasa_asmbl_664.p1, internal, 92846, 93076 -recovered pasa_asmbl_664.p1, internal, 93704, 93871 -recovered pasa_asmbl_664.p1, internal, 94294, 94450 -recovered pasa_asmbl_664.p1, internal, 94537, 94661 -recovered pasa_asmbl_664.p1, internal, 94817, 94947 Valid prediction for GlimmerHMM_glimmerT_1581-T1 Valid prediction for GlimmerHMM_glimmerT_1596-T1 Valid prediction for snap_scaffold_1-snap.2004-T1 Valid prediction for snap_scaffold_1-snap.2014-T1 Valid prediction for snap_scaffold_1-snap.2024-T1 Valid prediction for GeneMark_model.2098_t Couldn't classify 234397, 234458 Sorry, prediction pasa_asmbl_639.p1 fails validation. (TTC) GA 234397-234458 GT AGG (AGA) AG 234620-234758 GT AGG (ATC) AG 234966-235154 GT GGG (TTG) AG 235246-235374 GT TGG (AAA) AG 235461-235615 GT AAG (TAA) AG 236070-236103 AT GAA -recovered pasa_asmbl_639.p1, terminal, 236070, 236103 -recovered pasa_asmbl_639.p1, internal, 234620, 234758 -recovered pasa_asmbl_639.p1, internal, 234966, 235154 -recovered pasa_asmbl_639.p1, internal, 235246, 235374 -recovered pasa_asmbl_639.p1, internal, 235461, 235615 Valid prediction for HiQ_model.g1153.t1 Valid prediction for GeneMark_model.2105_t Valid prediction for GeneMark_model.2092_t Valid prediction for HiQ_model.g1145.t1 Valid prediction for snap_scaffold_1-snap.2028-T1 Valid prediction for GlimmerHMM_glimmerT_1582-T1 Valid prediction for CodingQuarry_transcript_2784-T1 Valid prediction for GeneMark_model.2118_t Valid prediction for pasa_asmbl_659.p1 Valid prediction for snap_scaffold_1-snap.2049-T1 Valid prediction for GlimmerHMM_glimmerT_1598-T1 Valid prediction for GlimmerHMM_glimmerT_1586-T1 Valid prediction for GlimmerHMM_glimmerT_1587-T1 Valid prediction for snap_scaffold_1-snap.2011-T1 Valid prediction for GlimmerHMM_glimmerT_1570-T1 Valid prediction for snap_scaffold_1-snap.2047-T1 Valid prediction for Augustus_model.g1164.t1 Valid prediction for snap_scaffold_1-snap.2030-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7588, rend_intergenic: 4693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15820, rend_intergenic: 9702 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16904, rend_intergenic: 16630 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21606, rend_intergenic: 18719 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28542, rend_intergenic: 22227 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40844, rend_intergenic: 32935 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46741, rend_intergenic: 41649 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80290, rend_intergenic: 76795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100641, rend_intergenic: 97672 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230694, rend_intergenic: 228914 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237510, rend_intergenic: 231784 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 279695, rend_intergenic: 274462 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 296666 -exon list size: 871 building trellis 0.1 0.2 0.3 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.9 3.0 3.1 3.2 3.3 3.4 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.2 5.3 5.4 5.5 5.6 5.7 5.8 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.2 9.3 9.4 9.5 9.6 9.7 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.5 15.6 15.7 15.8 15.9 16.0 16.2 16.3 16.4 16.5 16.6 16.7 16.8 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.2 20.3 20.4 20.5 20.6 20.7 20.8 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.8 21.9 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.1 28.2 28.3 28.4 28.5 28.6 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.2 31.3 31.4 31.5 31.6 31.7 31.8 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.4 34.5 34.6 34.7 34.8 34.9 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.7 40.8 40.9 41.0 41.1 41.2 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.2 42.3 42.4 42.5 42.6 42.7 42.8 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.2 46.3 46.4 46.5 46.6 46.7 46.8 47.0 47.1 47.2 47.3 47.4 47.5 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.5 52.6 52.7 52.8 52.9 53.0 53.2 53.3 53.4 53.5 53.6 53.7 53.8 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.2 57.3 57.4 57.5 57.6 57.7 57.8 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.8 58.9 59.0 59.1 59.2 59.3 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.1 65.2 65.3 65.4 65.5 65.6 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.2 68.3 68.4 68.5 68.6 68.7 68.8 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.4 71.5 71.6 71.7 71.8 71.9 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.1 78.2 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.2 79.3 79.4 79.5 79.6 79.7 79.8 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.2 83.3 83.4 83.5 83.6 83.7 83.8 84.0 84.1 84.2 84.3 84.4 84.5 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.3 90.4 90.5 90.6 90.7 90.8 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.2 94.3 94.4 94.5 94.6 94.7 94.8 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.6 96.7 96.8 96.9 97.0 97.1 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.7 99.8 99.9 -found 50 predictions from path traversal Error with prediction: snap lend_intergenic: 7588, rend_intergenic: 4693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15820, rend_intergenic: 9702 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16904, rend_intergenic: 16630 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21606, rend_intergenic: 18719 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28542, rend_intergenic: 22227 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40844, rend_intergenic: 32935 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46741, rend_intergenic: 41649 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80290, rend_intergenic: 76795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100641, rend_intergenic: 97672 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230694, rend_intergenic: 228914 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237510, rend_intergenic: 231784 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 279695, rend_intergenic: 274462 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 38 predictions persist after filtering for low support