#Read in the possible transitions
exon stop,1
exon_i0 donor_0,1
exon_i1 donor_1,1
exon_i2 donor_2,1
exon_m0 donor_0,1
exon_m1 donor_1,1
exon_m2 donor_2,1
exon_t stop,1
start exon,0.36 exon_i0,0.21 exon_i1,0.21 exon_i2,0.21
stop intergenic,1
donor_0 spacer5_0,1
donor_1 spacer5_1,1
donor_2 spacer5_2,1
acceptor_0 exon_t,0.38 exon_m0,0.21 exon_m1,0.21 exon_m2,0.21
acceptor_1 exon_t,0.38 exon_m0,0.21 exon_m1,0.21 exon_m2,0.21
acceptor_2 exon_t,0.38 exon_m0,0.21 exon_m1,0.21 exon_m2,0.21
branch_0 spacer3_0,1
branch_1 spacer3_1,1
branch_2 spacer3_2,1
spacer3_0 acceptor_0,1
spacer3_1 acceptor_1,1
spacer3_2 acceptor_2,1
spacer5_0 branch_0,1
spacer5_1 branch_1,1
spacer5_2 branch_2,1
r_exon r_start,1
r_exon_i r_start,1
r_exon_m0 r_acceptor_0,1
r_exon_m1 r_acceptor_1,1
r_exon_m2 r_acceptor_2,1
r_exon_t0 r_acceptor_0,1
r_exon_t1 r_acceptor_1,1
r_exon_t2 r_acceptor_2,1
r_start intergenic,1
r_stop r_exon,0.36 r_exon_t0,0.21 r_exon_t1,0.21 r_exon_t2,0.21
r_donor_0 r_exon_i,0.38 r_exon_m0,0.21 r_exon_m1,0.21 r_exon_m2,0.21
r_donor_1 r_exon_i,0.38 r_exon_m0,0.21 r_exon_m1,0.21 r_exon_m2,0.21
r_donor_2 r_exon_i,0.38 r_exon_m0,0.21 r_exon_m1,0.21 r_exon_m2,0.21
r_acceptor_0 r_spacer3_0,1
r_acceptor_1 r_spacer3_1,1
r_acceptor_2 r_spacer3_2,1
r_branch_0 r_spacer5_0,1
r_branch_1 r_spacer5_1,1
r_branch_2 r_spacer5_2,1
r_spacer3_0 r_branch_0,1
r_spacer3_1 r_branch_1,1
r_spacer3_2 r_branch_2,1
r_spacer5_0 r_donor_0,1
r_spacer5_1 r_donor_1,1
r_spacer5_2 r_donor_2,1
intergenic start,0.5 r_stop,0.5
contig intergenic,1