diamond v2.0.15.153 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 1
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Database input file: /data/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~BRAKER3/braker/traingenes.good.fa.nonreddb
Opening the database file...  [0s]
Loading sequences...  [0.007s]
Masking sequences...  [0.177s]
Writing sequences...  [0.001s]
Hashing sequences...  [0s]
Loading sequences...  [0s]
Writing trailer...  [0s]
Closing the input file...  [0s]
Closing the database file...  [0.001s]

Database sequences  2679
  Database letters  1334182
     Database hash  2644057c1f3f64767a7b1a67cb1bc063
        Total time  0.188000s
diamond v2.0.15.153 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 16
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /data/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~BRAKER3/braker
#Target sequences to report alignments for: 25
Opening the database...  [0.001s]
Database: /data/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~BRAKER3/braker/traingenes.good.fa.nonreddb.dmnd (type: Diamond database, sequences: 2679, letters: 1334182)
Block size = 2000000000
Opening the input file...  [0s]
Opening the output file...  [0s]
Loading query sequences...  [0.006s]
Masking queries...  [0.057s]
Algorithm: Double-indexed
Building query histograms...  [0.017s]
Allocating buffers...  [0s]
Loading reference sequences...  [0.002s]
Masking reference...  [0.036s]
Initializing temporary storage...  [0s]
Building reference histograms...  [0.017s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [0.008s]
Building query seed array...  [0.008s]
Computing hash join...  [0.003s]
Masking low complexity seeds...  [0.003s]
Searching alignments...  [0.041s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [0.008s]
Building query seed array...  [0.008s]
Computing hash join...  [0.002s]
Masking low complexity seeds...  [0.002s]
Searching alignments...  [0.029s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [0.009s]
Building query seed array...  [0.01s]
Computing hash join...  [0.002s]
Masking low complexity seeds...  [0.002s]
Searching alignments...  [0.029s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [0.008s]
Building query seed array...  [0.008s]
Computing hash join...  [0.002s]
Masking low complexity seeds...  [0.003s]
Searching alignments...  [0.027s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [0.008s]
Building query seed array...  [0.007s]
Computing hash join...  [0.002s]
Masking low complexity seeds...  [0.003s]
Searching alignments...  [0.029s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [0.01s]
Building query seed array...  [0.008s]
Computing hash join...  [0.003s]
Masking low complexity seeds...  [0.003s]
Searching alignments...  [0.027s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [0.008s]
Building query seed array...  [0.008s]
Computing hash join...  [0.002s]
Masking low complexity seeds...  [0.002s]
Searching alignments...  [0.025s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [0.007s]
Building query seed array...  [0.007s]
Computing hash join...  [0.002s]
Masking low complexity seeds...  [0.003s]
Searching alignments...  [0.025s]
Deallocating buffers...  [0s]
Clearing query masking...  [0s]
Computing alignments...  [0.358s]
Deallocating reference...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0s]
Deallocating queries...  [0s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0.004s]
Cleaning up...  [0s]
Total time = 1.173s
Reported 4331 pairwise alignments, 4331 HSPs.
2679 queries aligned.