#================================================ # Copyright Georgia Institute of Technology, Atlanta, Georgia, USA # Distributed by GeneProbe Inc., Atlanta, Georgia, USA #================================================ Installation instructions for GeneMark* software a. Copy the content of distribution to desired location. b. Install the key: copy key "gm_key" into users home directory as: cp gm_key ~/.gm_key Program is ready for execution. Perl scripts are configured with default Perl location at "/usr/bin/perl". Default path to Perl can be changed by script "change_path_in_perl_scripts.pl" from GeneMark* distribution folder. The following Perl modules are required: YAML Hash::Merge Logger::Simple Parallel::ForkManager MCE::Mutex Thread::Queue threads To check completeness of installation, run script "check_install.bash" These Perl modules are freely available for installation from CPAN` If some of the Perl modules are missing, then modules can be installed from CPAN or other method available on your platform. For example: see https://www.cpan.org/modules/INSTALL.html cpan App::cpanminus cpanm YAML or AWS or RedHat yum search YAML yum install YAML* # replace with full name from search or UBUNTU apt search YAML apt install YAML* # replace with full name from search Code was tested on Perl 5.10 or higher. Python 3.3 or higher is required for GeneMark-EP run mode. To verify that the entire software is working correctly, run a test example in GeneMark-E-tests folder. #================================================