diamond v0.9.24.125 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Database file: /yoshitake/test/annotation~BRAKER2/braker/traingenes.good.fa.nonreddb Opening the database file... [0.000448s] Loading sequences... [0.015648s] Masking sequences... [0.394673s] Writing sequences... [0.002892s] Hashing sequences... [0.001305s] Loading sequences... [3.8e-05s] Writing trailer... [8.5e-05s] Closing the input file... [2.9e-05s] Closing the database file... [5.4e-05s] Database hash = 9df1e2fa056359302c13cfe7c13be8b1 Processed 2072 sequences, 1064607 letters. Total time = 0.415553s diamond v0.9.24.125 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 16 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /yoshitake/test/annotation~BRAKER2/braker Opening the database... [0.000136s] #Target sequences to report alignments for: 25 Opening the input file... [6.2e-05s] Opening the output file... [9.8e-05s] Loading query sequences... [0.013479s] Masking queries... [0.077332s] Building query seed set... [0.012188s] Algorithm: Double-indexed Building query histograms... [0.011175s] Allocating buffers... [7.7e-05s] Loading reference sequences... [0.00304s] Building reference histograms... [0.01252s] Allocating buffers... [4.9e-05s] Initializing temporary storage... [0.010011s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [0.012817s] Building query index... [0.01617s] Building seed filter... [0.005279s] Searching alignments... [0.03373s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [0.010951s] Building query index... [0.010201s] Building seed filter... [0.002418s] Searching alignments... [0.023891s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [0.011132s] Building query index... [0.011231s] Building seed filter... [0.00255s] Searching alignments... [0.026877s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [0.010403s] Building query index... [0.009998s] Building seed filter... [0.002536s] Searching alignments... [0.029746s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [0.009402s] Building query index... [0.008205s] Building seed filter... [0.00264s] Searching alignments... [0.02312s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [0.010033s] Building query index... [0.01078s] Building seed filter... [0.002675s] Searching alignments... [0.024324s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [0.011112s] Building query index... [0.012018s] Building seed filter... [0.004125s] Searching alignments... [0.037705s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [0.029985s] Building query index... [0.030974s] Building seed filter... [0.009991s] Searching alignments... [0.03894s] Deallocating buffers... [0.000369s] Computing alignments... [0.833733s] Deallocating reference... [2.1e-05s] Loading reference sequences... [2.2e-05s] Deallocating buffers... [0.000329s] Deallocating queries... [0.000207s] Loading query sequences... [2e-05s] Closing the input file... [1.2e-05s] Closing the output file... [4.3e-05s] Closing the database file... [8e-06s] Deallocating taxonomy... [5e-06s] Total time = 1.46321s Reported 3143 pairwise alignments, 3151 HSPs. 2072 queries aligned.