ZZZ~wait-1min

input_1:FASTQ(.gz)

input_1/a.fq

Option

Output

Log

script: /yoshitake/PortablePipeline/PortablePipeline/scripts/ZZZ~wait-1min "$scriptdir"/ZZZ~wait-10sec
centos:7 centos:centos6
using docker
+ set -o pipefail
+ env
+ uname -a
+ cd input_1/
++ ls
++ egrep '[.]f(ast|)q([.]gz|)$'
+ r1=a.fq
+ '[' a.fq = '' ']'
++ date +%Y%m%d_%H%M%S_%3N
+ PPDOCNAME=pp20220120_143823_312_23639
+ echo pp20220120_143823_312_23639
+ docker run --name pp20220120_143823_312_23639 -v /yoshitake/test/ZZZ~wait-1min/input_1:/yoshitake/test/ZZZ~wait-1min/input_1 -w /yoshitake/test/ZZZ~wait-1min/input_1 -u 2007:600 -i --rm centos:7 ls
++ date +%Y%m%d_%H%M%S_%3N
+ PPDOCNAME=pp20220120_143824_118_29131
+ echo pp20220120_143824_118_29131
+ docker run --name pp20220120_143824_118_29131 -v /yoshitake/test/ZZZ~wait-1min/input_1:/yoshitake/test/ZZZ~wait-1min/input_1 -w /yoshitake/test/ZZZ~wait-1min/input_1 -u 2007:600 -i --rm centos:7 sleep 60
+ touch sleep60.txt
+ bash /yoshitake/PortablePipeline/PortablePipeline/scripts/ZZZ~wait-10sec ./
centos:7 centos:centos6
using docker
+ set -o pipefail
+ cd ./
++ ls
++ egrep '[.]f(ast|)q([.]gz|)$'
+ r1=a.fq
+ '[' a.fq = '' ']'
+ touch sleepb10.txt
+ sleep 10
+ touch sleepa10.txt
+ post_processing
+ '[' 2 = 1 ']'
+ exit
+ post_processing
+ '[' 1 = 1 ']'
+ echo 0
+ exit