1107732 + 0 in total (QC-passed reads + QC-failed reads) 569660 + 0 primary 538072 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 1039277 + 0 mapped (93.82% : N/A) 524989 + 0 primary mapped (92.16% : N/A) 569660 + 0 paired in sequencing 284830 + 0 read1 284830 + 0 read2 480318 + 0 properly paired (84.32% : N/A) 480318 + 0 with itself and mate mapped 44671 + 0 singletons (7.84% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)