1622444 + 0 in total (QC-passed reads + QC-failed reads) 856028 + 0 primary 766416 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 1506592 + 0 mapped (92.86% : N/A) 779150 + 0 primary mapped (91.02% : N/A) 856028 + 0 paired in sequencing 428014 + 0 read1 428014 + 0 read2 702272 + 0 properly paired (82.04% : N/A) 702272 + 0 with itself and mate mapped 76878 + 0 singletons (8.98% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)