1947690 + 0 in total (QC-passed reads + QC-failed reads) 902836 + 0 primary 1044854 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 1865670 + 0 mapped (95.79% : N/A) 858423 + 0 primary mapped (95.08% : N/A) 902836 + 0 paired in sequencing 451418 + 0 read1 451418 + 0 read2 814010 + 0 properly paired (90.16% : N/A) 814010 + 0 with itself and mate mapped 44413 + 0 singletons (4.92% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)