zcat input_1/DRR030439_1.fastq.gz > DRR030439_1.fastq; zcat input_1/DRR030439_2.fastq.gz > DRR030439_2.fastq; singularity exec -B /suikou/files/m64g/user2/work/101:/mnt --pwd /mnt /home/user2/img/c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_4-kegg_4 prinseq-lite.pl -fastq DRR030439_1.fastq -fastq2 DRR030439_2.fastq -out_good output.prinseq/DRR030439_1.fastq -out_bad null -out_format 3 -trim_tail_right 5 -trim_qual_right 20 -ns_max_p 20 -min_len 30 -trim_qual_window 5; mv output.prinseq/DRR030439_1.fastq_1.fastq output.prinseq/DRR030439_1.fastq; mv output.prinseq/DRR030439_1.fastq_2.fastq output.prinseq/DRR030439_2.fastq;rm -f DRR030439_1.fastq DRR030439_2.fastq perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "ja_JP.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). Input and filter stats: Input sequences (file 1): 100,000 Input bases (file 1): 10,000,000 Input mean length (file 1): 100.00 Input sequences (file 2): 100,000 Input bases (file 2): 10,000,000 Input mean length (file 2): 100.00 Good sequences (pairs): 97,455 Good bases (pairs): 19,491,000 Good mean length (pairs): 200.00 Good sequences (singletons file 1): 2,170 (2.17%) Good bases (singletons file 1): 217,000 Good mean length (singletons file 1): 100.00 Good sequences (singletons file 2): 305 (0.30%) Good bases (singletons file 2): 30,500 Good mean length (singletons file 2): 100.00 Bad sequences (file 1): 375 (0.38%) Bad bases (file 1): 37,500 Bad mean length (file 1): 100.00 Bad sequences (file 2): 2,170 (2.17%) Bad bases (file 2): 217,000 Bad mean length (file 2): 100.00 Sequences filtered by specified parameters: trim_qual_right: 1428 trim_tail_right: 28 min_len: 1159