centos:centos6 quay.io/biocontainers/fastqc:0.11.8--1 using docker + cd input_1 + xargs '-I{}' -P8 bash -c '{}' ++ ls ++ egrep '[.](fq|fastq|fq.gz|fastq.gz)$' + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363434_1.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363434_2.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363435_1.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363435_2.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363436_1.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363436_2.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363437_1.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363437_2.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363438_1.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363438_2.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363439_1.fastq.gz --extract + for i in '`ls |egrep "[.](fq|fastq|fq.gz|fastq.gz)$"`' + echo docker run -v '$PWD:$PWD' -w '$PWD' -u root -i --rm quay.io/biocontainers/fastqc:0.11.8--1 fastqc -t 1 SRR1363439_2.fastq.gz --extract Started analysis of SRR1363436_1.fastq.gz Started analysis of SRR1363435_1.fastq.gz Started analysis of SRR1363434_1.fastq.gz Started analysis of SRR1363436_2.fastq.gz Started analysis of SRR1363437_2.fastq.gz Started analysis of SRR1363435_2.fastq.gz Started analysis of SRR1363434_2.fastq.gz Started analysis of SRR1363437_1.fastq.gz Approx 5% complete for SRR1363436_1.fastq.gz Approx 5% complete for SRR1363435_1.fastq.gz Approx 5% complete for SRR1363434_1.fastq.gz Approx 5% complete for SRR1363436_2.fastq.gz Approx 5% complete for SRR1363437_1.fastq.gz Approx 5% complete for SRR1363435_2.fastq.gz Approx 5% complete for SRR1363434_2.fastq.gz Approx 5% complete for SRR1363437_2.fastq.gz Approx 10% complete for SRR1363436_1.fastq.gz Approx 10% complete for SRR1363434_1.fastq.gz Approx 10% complete for SRR1363435_1.fastq.gz Approx 10% complete for SRR1363436_2.fastq.gz Approx 10% complete for SRR1363437_1.fastq.gz Approx 10% complete for SRR1363435_2.fastq.gz Approx 10% complete for SRR1363437_2.fastq.gz Approx 10% complete for SRR1363434_2.fastq.gz Approx 15% complete for SRR1363436_1.fastq.gz Approx 15% complete for SRR1363434_1.fastq.gz Approx 15% complete for SRR1363435_1.fastq.gz Approx 15% complete for SRR1363436_2.fastq.gz Approx 15% complete for SRR1363435_2.fastq.gz Approx 15% complete for SRR1363437_1.fastq.gz Approx 15% complete for SRR1363434_2.fastq.gz Approx 15% complete for 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Approx 45% complete for SRR1363436_2.fastq.gz Approx 45% complete for SRR1363435_2.fastq.gz Approx 45% complete for SRR1363437_1.fastq.gz Approx 45% complete for SRR1363434_2.fastq.gz Approx 45% complete for SRR1363437_2.fastq.gz Approx 50% complete for SRR1363435_1.fastq.gz Approx 50% complete for SRR1363434_1.fastq.gz Approx 50% complete for SRR1363436_1.fastq.gz Approx 50% complete for SRR1363435_2.fastq.gz Approx 50% complete for SRR1363436_2.fastq.gz Approx 50% complete for SRR1363437_1.fastq.gz Approx 50% complete for SRR1363434_2.fastq.gz Approx 50% complete for SRR1363437_2.fastq.gz Approx 55% complete for SRR1363435_1.fastq.gz Approx 55% complete for SRR1363434_1.fastq.gz Approx 55% complete for SRR1363435_2.fastq.gz Approx 55% complete for SRR1363436_1.fastq.gz Approx 55% complete for SRR1363436_2.fastq.gz Approx 55% complete for SRR1363437_1.fastq.gz Approx 55% complete for SRR1363434_2.fastq.gz Approx 55% complete for SRR1363437_2.fastq.gz Approx 60% complete for 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complete for SRR1363435_1.fastq.gz Approx 70% complete for SRR1363436_2.fastq.gz Approx 75% complete for SRR1363435_2.fastq.gz Approx 70% complete for SRR1363437_1.fastq.gz Approx 75% complete for SRR1363434_1.fastq.gz Approx 75% complete for SRR1363436_1.fastq.gz Approx 75% complete for SRR1363437_2.fastq.gz Approx 80% complete for SRR1363435_1.fastq.gz Approx 75% complete for SRR1363434_2.fastq.gz Approx 75% complete for SRR1363436_2.fastq.gz Approx 80% complete for SRR1363435_2.fastq.gz Approx 75% complete for SRR1363437_1.fastq.gz Approx 80% complete for SRR1363434_1.fastq.gz Approx 80% complete for SRR1363436_1.fastq.gz Approx 80% complete for SRR1363437_2.fastq.gz Approx 85% complete for SRR1363435_1.fastq.gz Approx 80% complete for SRR1363434_2.fastq.gz Approx 85% complete for SRR1363435_2.fastq.gz Approx 80% complete for SRR1363436_2.fastq.gz Approx 80% complete for SRR1363437_1.fastq.gz Approx 85% complete for SRR1363434_1.fastq.gz Approx 85% complete for SRR1363436_1.fastq.gz Approx 85% complete for SRR1363437_2.fastq.gz Approx 90% complete for SRR1363435_1.fastq.gz Approx 85% complete for SRR1363434_2.fastq.gz Approx 90% complete for SRR1363435_2.fastq.gz Approx 85% complete for SRR1363437_1.fastq.gz Approx 85% complete for SRR1363436_2.fastq.gz Approx 90% complete for SRR1363434_1.fastq.gz Approx 90% complete for SRR1363436_1.fastq.gz Approx 90% complete for SRR1363437_2.fastq.gz Approx 95% complete for SRR1363435_1.fastq.gz Approx 90% complete for SRR1363434_2.fastq.gz Approx 95% complete for SRR1363435_2.fastq.gz Approx 90% complete for SRR1363437_1.fastq.gz Approx 95% complete for SRR1363437_2.fastq.gz Approx 95% complete for SRR1363436_1.fastq.gz Approx 95% complete for SRR1363434_1.fastq.gz Approx 95% complete for SRR1363434_2.fastq.gz Approx 90% complete for SRR1363436_2.fastq.gz Approx 95% complete for SRR1363437_1.fastq.gz Approx 95% complete for SRR1363436_2.fastq.gz Approx 100% complete for SRR1363434_2.fastq.gz Approx 100% complete for SRR1363436_1.fastq.gz Approx 100% complete for SRR1363435_2.fastq.gz Approx 100% complete for SRR1363436_2.fastq.gz Approx 100% complete for SRR1363434_1.fastq.gz Approx 100% complete for SRR1363437_2.fastq.gz Approx 100% complete for SRR1363435_1.fastq.gz Approx 100% complete for SRR1363437_1.fastq.gz Analysis complete for SRR1363434_2.fastq.gz Analysis complete for SRR1363436_2.fastq.gz Analysis complete for SRR1363434_1.fastq.gz Analysis complete for SRR1363436_1.fastq.gz Analysis complete for SRR1363435_2.fastq.gz Analysis complete for SRR1363437_2.fastq.gz Analysis complete for SRR1363435_1.fastq.gz Analysis complete for SRR1363437_1.fastq.gz Started analysis of SRR1363438_1.fastq.gz Started analysis of SRR1363438_2.fastq.gz Started analysis of SRR1363439_1.fastq.gz Started analysis of SRR1363439_2.fastq.gz Approx 5% complete for SRR1363438_1.fastq.gz Approx 5% complete for SRR1363438_2.fastq.gz Approx 5% complete for SRR1363439_1.fastq.gz Approx 5% complete for 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complete for SRR1363439_2.fastq.gz Approx 35% complete for SRR1363439_1.fastq.gz Approx 40% complete for SRR1363438_2.fastq.gz Approx 40% complete for SRR1363438_1.fastq.gz Approx 35% complete for SRR1363439_2.fastq.gz Approx 45% complete for SRR1363438_2.fastq.gz Approx 40% complete for SRR1363439_1.fastq.gz Approx 45% complete for SRR1363438_1.fastq.gz Approx 40% complete for SRR1363439_2.fastq.gz Approx 50% complete for SRR1363438_2.fastq.gz Approx 45% complete for SRR1363439_1.fastq.gz Approx 50% complete for SRR1363438_1.fastq.gz Approx 55% complete for SRR1363438_2.fastq.gz Approx 50% complete for SRR1363439_1.fastq.gz Approx 45% complete for SRR1363439_2.fastq.gz Approx 55% complete for SRR1363438_1.fastq.gz Approx 50% complete for SRR1363439_2.fastq.gz Approx 60% complete for SRR1363438_2.fastq.gz Approx 55% complete for SRR1363439_1.fastq.gz Approx 60% complete for SRR1363438_1.fastq.gz Approx 65% complete for SRR1363438_2.fastq.gz Approx 60% complete for SRR1363439_1.fastq.gz Approx 55% complete for SRR1363439_2.fastq.gz Approx 65% complete for SRR1363438_1.fastq.gz Approx 70% complete for SRR1363438_2.fastq.gz Approx 65% complete for SRR1363439_1.fastq.gz Approx 60% complete for SRR1363439_2.fastq.gz Approx 70% complete for SRR1363438_1.fastq.gz Approx 75% complete for SRR1363438_2.fastq.gz Approx 70% complete for SRR1363439_1.fastq.gz Approx 65% complete for SRR1363439_2.fastq.gz Approx 75% complete for SRR1363438_1.fastq.gz Approx 80% complete for SRR1363438_2.fastq.gz Approx 75% complete for SRR1363439_1.fastq.gz Approx 70% complete for SRR1363439_2.fastq.gz Approx 80% complete for SRR1363438_1.fastq.gz Approx 85% complete for SRR1363438_2.fastq.gz Approx 80% complete for SRR1363439_1.fastq.gz Approx 75% complete for SRR1363439_2.fastq.gz Approx 85% complete for SRR1363438_1.fastq.gz Approx 90% complete for SRR1363438_2.fastq.gz Approx 85% complete for SRR1363439_1.fastq.gz Approx 80% complete for SRR1363439_2.fastq.gz Approx 90% complete for SRR1363438_1.fastq.gz Approx 95% complete for SRR1363438_2.fastq.gz Approx 90% complete for SRR1363439_1.fastq.gz Approx 85% complete for SRR1363439_2.fastq.gz Approx 95% complete for SRR1363438_1.fastq.gz Approx 100% complete for SRR1363438_2.fastq.gz Analysis complete for SRR1363438_2.fastq.gz Approx 95% complete for SRR1363439_1.fastq.gz Approx 100% complete for SRR1363438_1.fastq.gz Analysis complete for SRR1363438_1.fastq.gz Approx 90% complete for SRR1363439_2.fastq.gz Approx 100% complete for SRR1363439_1.fastq.gz Analysis complete for SRR1363439_1.fastq.gz Approx 95% complete for SRR1363439_2.fastq.gz Approx 100% complete for SRR1363439_2.fastq.gz Analysis complete for SRR1363439_2.fastq.gz + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' ++ head -n 1 ++ ls -d SRR1363434_1_fastqc SRR1363434_2_fastqc SRR1363435_1_fastqc SRR1363435_2_fastqc SRR1363436_1_fastqc SRR1363436_2_fastqc SRR1363437_1_fastqc SRR1363437_2_fastqc SRR1363438_1_fastqc SRR1363438_2_fastqc SRR1363439_1_fastqc SRR1363439_2_fastqc + file0=SRR1363434_1_fastqc ++ seq 5 10 + for j in '`seq 5 10`' ++ head -n 5 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 1 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363434_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363435_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363435_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363436_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363436_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363437_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363437_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363438_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363438_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363439_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 5 SRR1363439_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + echo '' + for j in '`seq 5 10`' ++ head -n 6 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 1 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363434_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363435_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363435_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363436_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363436_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363437_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363437_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363438_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363438_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363439_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 6 SRR1363439_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + echo '' + for j in '`seq 5 10`' ++ head -n 7 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 1 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363434_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363435_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363435_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363436_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363436_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363437_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363437_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363438_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363438_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363439_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 7 SRR1363439_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + echo '' + for j in '`seq 5 10`' ++ head -n 8 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 1 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363434_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363435_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363435_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363436_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363436_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363437_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363437_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363438_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363438_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363439_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 8 SRR1363439_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + echo '' + for j in '`seq 5 10`' ++ head -n 9 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 1 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363434_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363435_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363435_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363436_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363436_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363437_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363437_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363438_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363438_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363439_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 9 SRR1363439_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + echo '' + for j in '`seq 5 10`' ++ head -n 10 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 1 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363434_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363434_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363435_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363435_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363436_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363436_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363437_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363437_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363438_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363438_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363439_1_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + for i in '*_fastqc' ++ head -n 10 SRR1363439_2_fastqc/fastqc_data.txt ++ tail -n 1 ++ cut -f 2 + echo '' + echo '' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + for j in per_base_quality.png per_tile_quality.png per_sequence_gc_content.png adapter_content.png duplication_levels.png kmer_profiles.png per_base_n_content.png per_base_sequence_content.png per_sequence_quality.png sequence_length_distribution.png + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + for i in '*_fastqc' + echo '' + echo '' + echo '
nameSRR1363434_1_fastqcSRR1363434_2_fastqcSRR1363435_1_fastqcSRR1363435_2_fastqcSRR1363436_1_fastqcSRR1363436_2_fastqcSRR1363437_1_fastqcSRR1363437_2_fastqcSRR1363438_1_fastqcSRR1363438_2_fastqcSRR1363439_1_fastqcSRR1363439_2_fastqc
File' 'typeConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'callsConventional' base 'calls
EncodingSanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9Sanger' / Illumina '1.9
Total' 'Sequences100000010000001000000100000010000001000000100000010000001000000100000010000001000000
Sequences' flagged as poor 'quality000000000000
Sequence' 'length101101101101101101101101101101101101
%GC414141404141404040404141
Overrepresented sequences
'
++ grep -n Overrepresented SRR1363434_1_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+744 SRR1363434_1_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363434_2_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+744 SRR1363434_2_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 5 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363435_1_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+689 SRR1363435_1_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363435_2_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+689 SRR1363435_2_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363436_1_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+744 SRR1363436_1_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363436_2_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+744 SRR1363436_2_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 8 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363437_1_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+909 SRR1363437_1_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363437_2_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+909 SRR1363437_2_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363438_1_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+854 SRR1363438_1_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363438_2_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+853 SRR1363438_2_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363439_1_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+799 SRR1363439_1_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 2 temp.txt
+ echo '
'
++ grep -n Overrepresented SRR1363439_2_fastqc/fastqc_data.txt
++ cut -f 1 -d :
+ tail -n+799 SRR1363439_2_fastqc/fastqc_data.txt
+ tail -n+3
+ head -n-1
++ grep -n '>>END_MODULE' temp.txt
++ head -n 1
++ cut -f 1 -d :
+ head -n 7 temp.txt
+ echo '
per_base_quality.png
per_tile_quality.png
per_sequence_gc_content.png
adapter_content.png
duplication_levels.png
kmer_profiles.png
per_base_n_content.png
per_base_sequence_content.png
per_sequence_quality.png
sequence_length_distribution.png
' + rm -f temp.txt + post_processing + '[' 1 = 1 ']' + '[' 'docker run -v $PWD:$PWD -w $PWD -u root -i --rm ' = 'docker run -v $PWD:$PWD -w $PWD -u root -i --rm ' ']' + docker run -v /data/user2/work/75/input_1:/data/user2/work/75/input_1 -w /data/user2/work/75/input_1 -u root -i --rm centos:centos6 chmod -R a=rXw . + echo 0 + exit