+ PP_RUN_IMAGE=c2997108/centos7:mamba-salsa_4-yahs_2
+ shift
+ PP_RUN_DOCKER_CMD=("${@}")
++ date +%Y%m%d_%H%M%S_%3N
+ PPDOCNAME=pp20231210_094102_276_1546
+ echo pp20231210_094102_276_1546
++ id -u
++ id -g
+ docker run --name pp20231210_094102_276_1546 -v /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/Hi-C~YaHS:/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/Hi-C~YaHS -w /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/Hi-C~YaHS -v /suikou/files/m64k/backup/2021-08-27_Hi-C/rawdata:/suikou/files/m64k/backup/2021-08-27_Hi-C/rawdata -v /suikou/files/m256y/yoshitake.kazutoshi/work:/suikou/files/m256y/yoshitake.kazutoshi/work -v /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev:/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev -v /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake:/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake -v /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test:/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test -v /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/Hi-C~YaHS:/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/Hi-C~YaHS -u 2007:600 -i --rm c2997108/centos7:mamba-salsa_4-yahs_2 juicer pre -a -o out_JBAT yahs.out.bin yahs.out_scaffolds_final.agp reformat/hatahifihic.hic.p_ctg.gfa.fa.fai
[I::main_pre] make juicer pre input from BIN file yahs.out.bin
[I::make_juicer_pre_file_from_bin] 97425808 read pairs processed: 0 unmapped
[I::main_pre] genome size: 1113260803
[I::main_pre] scale factor: 1
[I::main_pre] chromosome sizes for juicer_tools pre -
PRE_C_SIZE: assembly 1113260803
[I::main_pre] JUICER_PRE CMD: java -Xmx36G -jar ${juicer_tools} pre out_JBAT.txt out_JBAT.hic <(echo "assembly 1113260803")
[I::main_pre] Version: 1.2
[I::main_pre] CMD: juicer pre -a -o out_JBAT yahs.out.bin yahs.out_scaffolds_final.agp reformat/hatahifihic.hic.p_ctg.gfa.fa.fai
[I::main_pre] Real time: 57.939 sec; CPU: 46.309 sec; Peak RSS: 0.015 GB