karyotype= circos.karyotype.txt
chromosomes_units= 1000000
chromosomes= Scaffold_13;Scaffold_14;Scaffold_12;Scaffold_11;Scaffold_8;Scaffold_6;Scaffold_9;Scaffold_10;Scaffold_4;Scaffold_7;Scaffold_3;Scaffold_5;Scaffold_2;Scaffold_1;9;8;6;2;5;4;10;1;3;7
<links>
<link>
file=circos.link.txt
radius= 0.9r
color= red
<rules>
<rule>
condition= from(Scaffold_13)
color= spectral-11-div-1
</rule>
<rule>
condition= from(Scaffold_14)
color= spectral-11-div-2
</rule>
<rule>
condition= from(Scaffold_12)
color= spectral-11-div-3
</rule>
<rule>
condition= from(Scaffold_11)
color= spectral-11-div-4
</rule>
<rule>
condition= from(Scaffold_8)
color= spectral-11-div-5
</rule>
<rule>
condition= from(Scaffold_6)
color= spectral-11-div-6
</rule>
<rule>
condition= from(Scaffold_9)
color= spectral-11-div-7
</rule>
<rule>
condition= from(Scaffold_10)
color= spectral-11-div-8
</rule>
<rule>
condition= from(Scaffold_4)
color= spectral-11-div-9
</rule>
<rule>
condition= from(Scaffold_7)
color= spectral-11-div-10
</rule>
<rule>
condition= from(Scaffold_3)
color= spectral-11-div-11
</rule>
<rule>
condition= from(Scaffold_5)
color= spectral-11-div-1
</rule>
<rule>
condition= from(Scaffold_2)
color= spectral-11-div-2
</rule>
<rule>
condition= from(Scaffold_1)
color= spectral-11-div-3
</rule>
</rules>
</link>
</links>
<ideogram>
<spacing>
default= 0.005r
</spacing>
thickness= 7p
stroke_thickness= 2p
stroke_color= black

fill= yes
fill_color= black

radius= 0.80r
show_label= yes
label_font= default
label_radius= dims(ideogram,radius) + 0.1r
label_size= 5p
label_case= upper
label_parallel = yes

label_format= eval(sprintf("%s",var(chr)))

</ideogram>
<image>
<<include etc/image.conf>>
radius*= 500p
</image>
<<include etc/colors_fonts_patterns.conf>>
<<include etc/housekeeping.conf>>