Name Last modified Size Description![[PARENTDIR]](/icons/back.gif){kind=icon}
Parent Directory -
![[DIR]](/icons/folder.gif){kind=icon}
Comparative-genomics~FastANI/ 2025-03-03 00:54 -
Comparative-genomics~circos-plot-with-single-copy-gene/ 2022-05-09 22:43 -
Comparative-genomics~make-align-for-mauve/ 2022-10-21 14:38 -
Hi-C~SALSA/ 2022-05-02 11:24 -
Hi-C~YaHS/ 2023-12-10 15:46 -
QC~jellyfish/ 2019-09-06 17:04 -
QC~kmergenie/ 2023-11-28 19:57 -
QC~multi-fastqc/ 2019-09-06 16:55 -
QC~seqkit/ 2023-12-06 19:04 -
RNA-seq~DEGanalysis/ 2025-06-04 23:32 -
RNA-seq~HISAT2-StringTie-DEGanalysis/ 2019-09-06 07:43 -
RNA-seq~SNPcall-STAR-GATK/ 2019-09-18 10:40 -
RNA-seq~SNPcall-bbmap-callvariants/ 2023-03-01 09:08 -
RNA-seq~Trinity-kallisto-sleuth/ 2019-09-08 00:18 -
RNA-seq~clustering/ 2021-01-16 14:31 -
RNA-seq~featureCounts/ 2019-09-06 16:24 -
RNA-seq~salmon/ 2022-05-27 18:41 -
SNPcall~GATK-HaplotypeCaller/ 2019-09-25 01:03 -
SNPcall~bcftools-mpileup/ 2019-09-25 02:17 -
SNPcall~xatlas-glnexus/ 2023-11-26 20:53 -
WGS~genotyping-by-GATK/ 2019-09-18 10:37 -
WGS~genotyping-by-mpileup/ 2019-12-24 11:42 -
ZZZ~hello-world/ 2022-01-20 14:34 -
ZZZ~wait-10sec/ 2022-01-20 14:37 -
ZZZ~wait-1min/ 2022-01-20 14:39 -
annotation~BRAKER2/ 2021-01-17 23:11 -
annotation~BRAKER3/ 2024-01-17 00:18 -
annotation~Funannotate/ 2024-05-13 11:57 -
annotation~Helixer-with-GPU/ 2025-02-11 18:09 -
annotation~Helixer/ 2025-02-11 18:09 -
annotation~SpliceAI/ 2024-01-17 01:17 -
annotation~Trinotate/ 2021-01-20 18:08 -
annotation~blast-diamond/ 2023-03-08 09:39 -
annotation~blast-diamond_for_cDNA/ 2023-03-08 23:10 -
annotation~blast-diamond_for_protein/ 2023-03-08 23:22 -
annotation~blast/ 2019-09-06 16:51 -
assemble~SPAdes/ 2021-01-24 09:03 -
assemble~flye/ 2024-11-05 09:42 -
assemble~hifiasm/ 2023-10-21 20:09 -
assemble~megahit/ 2021-01-16 21:58 -
assemble~oatk/ 2025-05-15 09:14 -
assemble~platanus-allele/ 2021-01-16 22:04 -
assemble~platanus/ 2019-11-16 03:58 -
basic-tools~merge_table/ 2019-09-06 18:05 -
convert~FASTA_to_FASTQ/ 2021-01-18 00:12 -
convert~extract-FASTA-from-GFF3orGTF-and-FASTA/ 2019-09-06 16:48 -
convert~gff3_to_gtf/ 2019-09-06 16:22 -
eDNA~HaCeD-Seq_with_UMI_using_Nanopore/ 2021-07-12 11:09 -
graph~UPGMA-tree/ 2022-06-10 00:53 -
graph~VCFtoTree/ 2019-09-25 00:15 -
img/ 2024-12-26 12:52 -
linkage-analysis~SELDLA/ 2019-09-18 11:11 -
linkage-analysis~manhattan-plot/ 2019-09-19 23:32 -
linkage-analysis~single-cell_CellRanger-VarTrix/ 2022-05-02 11:47 -
mapping-illumina~HISAT2/ 2019-09-06 16:18 -
mapping-illumina~bbmap/ 2022-05-27 17:17 -
mapping-illumina~bwa_mem/ 2019-09-25 00:19 -
mapping-illumina~parabricks/ 2024-01-17 00:14 -
mapping-nanopore~minimap2/ 2023-03-22 01:01 -
mapping-smallRNA~miRDeep2/ 2024-04-12 12:36 -
metagenome~DADA2/ 2022-01-20 15:04 -
metagenome~MAG-annotation-by-10core-genes/ 2022-12-02 22:47 -
metagenome~MAG-annotation-by-SILVA-SSU-LSU/ 2022-12-04 22:31 -
metagenome~PR2_NCBI-16S-mito-plastid_single-end/ 2022-10-19 15:28 -
metagenome~Taxonomic-classifications-by-10core-genes/ 2022-12-02 21:34 -
metagenome~clustering_pfam-annotation/ 2021-04-24 01:22 -
metagenome~mapping-to-MAG-with-full-assembly/ 2022-09-06 00:38 -
metagenome~mapping-to-MAG/ 2022-07-25 11:20 -
metagenome~metaWRAP/ 2022-01-20 14:53 -
metagenome~silva-SSU-LSU_PR2_NCBI-mito-plastid_MitoFish_paired-end/ 2022-08-09 21:41 -
metagenome~silva-SSU-LSU_PR2_NCBI-mito-plastid_MitoFish_single-end/ 2023-11-09 01:33 -
metagenome~silva_SSU+LSU-paired-end/ 2021-01-20 18:07 -
metagenome~silva_SSU+LSU/ 2019-09-08 19:31 -
metagenome~use-genbank-fasta-as-reference/ 2022-04-18 12:17 -
nanopore~filter-lambda-phage-reads/ 2025-03-02 18:19 -
nanopore~flye-sickle_se/ 2019-09-06 18:00 -
nanopore~flye/ 2019-09-06 18:04 -
nanopore~get-consensus/ 2025-03-23 22:54 -
nanopore~pilon/ 2019-09-06 22:02 -
nanopore~sickle_se/ 2019-09-06 17:53 -
nanopore~split-barcode/ 2021-10-08 18:45 -
nanopore~split-barcode_with_slightly_misaligned_primer/ 2021-10-08 18:45 -
post-assemble~Repeatmodeler/ 2023-11-29 13:20 -
post-assemble~abyss-fac/ 2022-01-20 15:07 -
post-assemble~busco_v5/ 2024-11-27 00:33 -
post-assemble~coverage-length-graph/ 2019-09-06 18:16 -
post-assemble~coverage-length-graph_by-minimap2/ 2025-03-02 18:10 -
post-assemble~dotplot-by-last/ 2022-11-11 14:47 -
post-assemble~dotplot-by-minimap2/ 2019-09-06 18:09 -
preprocessing~download-SRA-FASTQ/ 2022-09-28 00:57 -
preprocessing~exclude-specific-entries-in-FASTA/ 2025-06-04 23:25 -
preprocessing~extract-only-specific-entries-in-FASTA/ 2025-06-04 23:27 -
statistics~DESeq2/ 2023-09-07 18:05 -
statistics~all-sample-combinations-DESeq2-edgeR/ 2022-09-29 00:00 -
statistics~edgeR/ 2023-09-07 18:09 -
statistics~sample_distance/ 2019-09-06 18:17 -
trimming~sickle-pe/ 2024-11-05 09:44 -
trimming~sickle-se/ 2024-11-05 09:36 -
![[ ]](/icons/unknown.gif){kind=icon}
docker-ce_17.03.3~ce-0~ubuntu-xenial_amd64.deb 2019-04-04 07:31 18M
![[ ]](/icons/tar.gif){kind=icon}
PPUbuntu20.tar 2022-05-11 13:00 1.1G