RNA-seq~Trinity-kallisto-sleuth

de novo RNA-seq analysis pipeline Trinity, kallisto, sleuth

input_1:paired-end FASTQ(.gz) files

input_1/0h_A_1.fq.gz

input_1/0h_A_2.fq.gz

input_1/0h_B_1.fq.gz

input_1/0h_B_2.fq.gz

input_1/1week_A1_1.fq.gz

input_1/1week_A1_2.fq.gz

input_1/1week_A2_1.fq.gz

input_1/1week_A2_2.fq.gz

input_2:sample information file [optional]

input_2/sample.txt

id	condition
0h_A	0h
0h_B	0h
1week_A1	1w
1week_A2	1w

Option

-c "8" -m "64" -f "0.05" -t "--SS_lib_type RF" -k "-b 100 --rf-stranded" -d "100"

Output

0_result.html

view all outputs